date:20150107

[gentoo-commits] gentoo-x86 commit in sci-chemistry/ccpn: ChangeLog ccpn-2.4.1_p150108.ebuild

2015-01-07 Thread Justin Lecher (jlec)

jlec15/01/08 07:58:02

  Modified: ChangeLog
  Added:ccpn-2.4.1_p150108.ebuild
  Log:
  sci-chemistry/ccpn: Todays python patches
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  ChangesPath
1.156sci-chemistry/ccpn/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.156&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.156&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?r1=1.155&r2=1.156

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v
retrieving revision 1.155
retrieving revision 1.156
diff -u -r1.155 -r1.156
--- ChangeLog   5 Jan 2015 13:51:04 -   1.155
+++ ChangeLog   8 Jan 2015 07:58:02 -   1.156
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/ccpn
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.155 
2015/01/05 13:51:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.156 
2015/01/08 07:58:02 jlec Exp $
+
+*ccpn-2.4.1_p150108 (08 Jan 2015)
+
+  08 Jan 2015; Justin Lecher  +ccpn-2.4.1_p150108.ebuild:
+  Todays python patches
 
 *ccpn-2.4.1_p150105 (05 Jan 2015)
 



1.1  sci-chemistry/ccpn/ccpn-2.4.1_p150108.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.4.1_p150108.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.4.1_p150108.ebuild?rev=1.1&content-type=text/plain

Index: ccpn-2.4.1_p150108.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.4.1_p150108.ebuild,v 1.1 
2015/01/08 07:58:02 jlec Exp $

EAPI=5

PYTHON_COMPAT=( python2_7 )
PYTHON_REQ_USE="ssl,tk"

inherit eutils flag-o-matic multilib portability python-single-r1 
toolchain-funcs versionator

PATCHSET="${PV##*_p}"
MY_PN="${PN}mr"
MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
MY_MAJOR="$(get_version_component_range 1-3)"

DESCRIPTION="The Collaborative Computing Project for NMR"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn";
SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz";
[[ -n ${PATCHSET} ]] \
&& SRC_URI+=" 
http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz";

SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+opengl"

REQUIRED_USE="${PYTHON_REQUIRED_USE}"

RDEPEND="
${PYTHON_DEPS}
dev-lang/tk[threads]
dev-python/numpy[${PYTHON_USEDEP}]
dev-tcltk/tix
=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
sci-biology/psipred
x11-libs/libXext
x11-libs/libX11
opengl? (
media-libs/freeglut
dev-python/pyglet[${PYTHON_USEDEP}] )"
DEPEND="${RDEPEND}"

RESTRICT="mirror"

S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)

src_prepare() {
[[ -n ${PATCHSET} ]] && \
EPATCH_OPTS="-p2" epatch 
"${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch

epatch "${FILESDIR}"/2.3.1-parallel.patch

append-lfs-flags

sed \
-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
-e "s:weights_s:weights:g" \
-i python/ccpnmr/analysis/wrappers/Psipred.py || die

local tk_ver
local myconf

tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"

if use opengl; then
GLUT_NEED_INIT="-DNEED_GLUT_INIT"
IGNORE_GL_FLAG=""
GL_FLAG="-DUSE_GL_TRUE"
GL_DIR="${EPREFIX}/usr"
GL_LIB="-lglut -lGLU -lGL"
GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"

else
IGNORE_GL_FLAG="-DIGNORE_GL"
GL_FLAG="-DUSE_GL_FALSE"
fi

GLUT_NOT_IN_GL=""
GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"

rm -rf data model doc license || die

sed \
-e "s|/usr|${EPREFIX}/usr|g" \
-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|

[gentoo-commits] gentoo-x86 commit in sci-biology/trnascan-se: trnascan-se-1.31.ebuild metadata.xml ChangeLog trnascan-se-1.23-r1.ebuild

2015-01-07 Thread Justin Lecher (jlec)

jlec15/01/08 07:42:51

  Modified: metadata.xml ChangeLog
  Added:trnascan-se-1.31.ebuild
  Removed:  trnascan-se-1.23-r1.ebuild
  Log:
  sci-biology/trnascan-se: Version BUmp, #532460
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  ChangesPath
1.4  sci-biology/trnascan-se/metadata.xml

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?rev=1.4&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?rev=1.4&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/metadata.xml?r1=1.3&r2=1.4

Index: metadata.xml
===
RCS file: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/metadata.xml,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- metadata.xml14 Sep 2006 02:19:14 -  1.3
+++ metadata.xml8 Jan 2015 07:42:51 -   1.4
@@ -1,8 +1,8 @@
 
 http://www.gentoo.org/dtd/metadata.dtd";>
 
-   sci-biology
-   
+  sci-biology
+  
tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic 
tRNA
genes, with a false positive rate of less than one per 15 
gigabases,
and with a search speed of about 30 kb/second. It was 
implemented for



1.14 sci-biology/trnascan-se/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?rev=1.14&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?rev=1.14&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/ChangeLog?r1=1.13&r2=1.14

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog   16 Jul 2010 22:09:08 -  1.13
+++ ChangeLog   8 Jan 2015 07:42:51 -   1.14
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/trnascan-se
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.13 
2010/07/16 22:09:08 hwoarang Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/trnascan-se/ChangeLog,v 1.14 
2015/01/08 07:42:51 jlec Exp $
+
+*trnascan-se-1.31 (08 Jan 2015)
+
+  08 Jan 2015; Justin Lecher  -trnascan-se-1.23-r1.ebuild,
+  +trnascan-se-1.31.ebuild, +files/trnascan-se-1.31-ldflags.patch,
+  metadata.xml:
+  Version BUmp, #532460
 
   16 Jul 2010; Markos Chandras 
   trnascan-se-1.23-r2.ebuild:



1.1  sci-biology/trnascan-se/trnascan-se-1.31.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild?rev=1.1&content-type=text/plain

Index: trnascan-se-1.31.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/trnascan-se/trnascan-se-1.31.ebuild,v 1.1 
2015/01/08 07:42:51 jlec Exp $

EAPI=5

PERL_EXPORT_PHASE_FUNCTIONS=no

inherit eutils perl-module toolchain-funcs

DESCRIPTION="tRNA detection in large-scale genome sequences"
HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/";
SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

S="${WORKDIR}"/tRNAscan-SE-1.3.1/

src_prepare() {
epatch \
"${FILESDIR}"/${P}-ldflags.patch
sed \
-e "s:BINDIR  = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
-e "s:LIBDIR  = \$(HOME)/lib/tRNAscan-SE:LIBDIR = 
${EPRFIX}/usr/share/${PN}:" \
-e "s:MANDIR  = \$(HOME)/man:MANDIR = 
${EPREFIX}/usr/share/man:" \
-e "s:CC = gcc:CC = $(tc-getCC):" \
-e "s:CFLAGS = -O:CFLAGS = ${CFLAGS}:" \
-i Makefile || die

perl_set_version
}

src_test() {
emake PATH="${S}:${PATH}" testrun
}

src_install() {
dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4

newman tRNAscan-SE.man tRNAscan-SE.man.1

dodoc MANUAL README Release.history

insinto /usr/share/${PN}/
doins *.cm gcode.* Dsignal TPCsignal

dodoc Manual.ps

insinto ${VENDOR_LIB}
doins -r tRNAscanSE
}

[gentoo-commits] gentoo-x86 commit in sci-biology/trnascan-se/files: trnascan-se-1.31-ldflags.patch

2015-01-07 Thread Justin Lecher (jlec)

jlec15/01/08 07:42:51

  Added:trnascan-se-1.31-ldflags.patch
  Log:
  sci-biology/trnascan-se: Version BUmp, #532460
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  ChangesPath
1.1  
sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch?rev=1.1&content-type=text/plain

Index: trnascan-se-1.31-ldflags.patch
===
diff --git a/Makefile b/Makefile
index 53e5c5b..a2d3feb 100644
--- a/Makefile
+++ b/Makefile
@@ -109,17 +109,17 @@ MPOBJ = mpviterbi.o mp-dbviterbi.o
 all:   $(PROGS) tRNAscan-SE setpaths
 
 covels-SE:  $(OBJ) scan_main.o
-   $(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
+   $(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o covels-SE scan_main.o $(OBJ) 
$(LIBS)
 
 coves-SE: $(OBJ) score_main.o
-   $(CC) $(CFLAGS) $(RFLAGS) -o coves-SE score_main.o $(OBJ) $(LIBS)
+   $(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o coves-SE score_main.o $(OBJ) 
$(LIBS)
 
 eufindtRNA: $(SQUIDOBJ) pavesi.o eufind_main.o
-   $(CC) $(CFLAGS)  -o eufindtRNA eufind_main.o \
+   $(CC) $(CFLAGS)  $(LDFLAGS) -o eufindtRNA eufind_main.o \
pavesi.o $(SQUIDOBJ) $(LIBS)
 
 trnascan-1.4: trnascan.o
-   $(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" -o trnascan-1.4 trnascan.c
+   $(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" $(LDFLAGS) -o trnascan-1.4 
trnascan.c
 
 tRNAscan-SE:
$(PERLDIR)/$(PERLBIN) checkversion.pl

[gentoo-commits] gentoo-x86 commit in media-tv/tvnamer: tvnamer-2.3.ebuild ChangeLog

2015-01-07 Thread Mike Frysinger (vapier)

vapier  15/01/08 07:38:34

  Modified: tvnamer-2.3.ebuild ChangeLog
  Log:
  Mark amd64/x86 stable.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
D2E96200)

Revision  ChangesPath
1.2  media-tv/tvnamer/tvnamer-2.3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild?r1=1.1&r2=1.2

Index: tvnamer-2.3.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- tvnamer-2.3.ebuild  29 Jun 2014 16:50:26 -  1.1
+++ tvnamer-2.3.ebuild  8 Jan 2015 07:38:34 -   1.2
@@ -1,19 +1,21 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild,v 1.1 
2014/06/29 16:50:26 thev00d00 Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-tv/tvnamer/tvnamer-2.3.ebuild,v 1.2 
2015/01/08 07:38:34 vapier Exp $
 
 EAPI=5
 
 PYTHON_COMPAT="python2_7"
 inherit distutils-r1
 
-SRC_URI="mirror://pypi/t/${PN}/${P}.tar.gz"
 DESCRIPTION="Automatic TV episode file renamer, data from thetvdb.com"
 HOMEPAGE="http://github.com/dbr/tvnamer";
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
+SRC_URI="mirror://pypi/t/${PN}/${P}.tar.gz"
+
 LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="amd64 x86"
 IUSE=""
+
 RDEPEND="dev-python/tvdb_api"
 DEPEND="${DEPEND}
dev-python/setuptools



1.3  media-tv/tvnamer/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/ChangeLog?rev=1.3&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/ChangeLog?rev=1.3&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-tv/tvnamer/ChangeLog?r1=1.2&r2=1.3

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-tv/tvnamer/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog   29 Jun 2014 16:50:26 -  1.2
+++ ChangeLog   8 Jan 2015 07:38:34 -   1.3
@@ -1,6 +1,9 @@
 # ChangeLog for media-tv/tvnamer
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-tv/tvnamer/ChangeLog,v 1.2 2014/06/29 
16:50:26 thev00d00 Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-tv/tvnamer/ChangeLog,v 1.3 2015/01/08 
07:38:34 vapier Exp $
+
+  08 Jan 2015; Mike Frysinger  tvnamer-2.3.ebuild:
+  Mark amd64/x86 stable.
 
 *tvnamer-2.3 (29 Jun 2014)

[gentoo-commits] gentoo-x86 commit in dev-python/tvdb_api: tvdb_api-1.9.ebuild ChangeLog

2015-01-07 Thread Mike Frysinger (vapier)

vapier  15/01/08 07:38:34

  Modified: tvdb_api-1.9.ebuild ChangeLog
  Log:
  Mark amd64/x86 stable.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
D2E96200)

Revision  ChangesPath
1.2  dev-python/tvdb_api/tvdb_api-1.9.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild?r1=1.1&r2=1.2

Index: tvdb_api-1.9.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- tvdb_api-1.9.ebuild 5 Jul 2014 14:59:47 -   1.1
+++ tvdb_api-1.9.ebuild 8 Jan 2015 07:38:34 -   1.2
@@ -1,18 +1,20 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild,v 
1.1 2014/07/05 14:59:47 thev00d00 Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/tvdb_api-1.9.ebuild,v 
1.2 2015/01/08 07:38:34 vapier Exp $
 
 EAPI=5
 
 PYTHON_COMPAT="python2_7"
 inherit distutils-r1 vcs-snapshot
 
-SRC_URI="https://github.com/dbr/${PN}/tarball/${PV} -> ${P}.tar.gz"
 DESCRIPTION="Python interface to thetvdb.com API"
 HOMEPAGE="http://github.com/dbr/tvdb_api";
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
+SRC_URI="https://github.com/dbr/${PN}/tarball/${PV} -> ${P}.tar.gz"
+
 LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="amd64 x86"
 IUSE=""
+
 DEPEND="dev-python/setuptools"
 RDEPEND=""



1.4  dev-python/tvdb_api/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/ChangeLog?rev=1.4&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/ChangeLog?rev=1.4&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/tvdb_api/ChangeLog?r1=1.3&r2=1.4

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/ChangeLog,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- ChangeLog   5 Jul 2014 14:59:47 -   1.3
+++ ChangeLog   8 Jan 2015 07:38:34 -   1.4
@@ -1,6 +1,9 @@
 # ChangeLog for dev-python/tvdb_api
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/ChangeLog,v 1.3 
2014/07/05 14:59:47 thev00d00 Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-python/tvdb_api/ChangeLog,v 1.4 
2015/01/08 07:38:34 vapier Exp $
+
+  08 Jan 2015; Mike Frysinger  tvdb_api-1.9.ebuild:
+  Mark amd64/x86 stable.
 
 *tvdb_api-1.9 (05 Jul 2014)

[gentoo-commits] gentoo-x86 commit in sci-biology/cufflinks: ChangeLog cufflinks-2.2.1-r1.ebuild cufflinks-1.3.0-r1.ebuild cufflinks-2.2.1.ebuild

2015-01-07 Thread Justin Lecher (jlec)

jlec15/01/08 07:35:53

  Modified: ChangeLog cufflinks-2.2.1-r1.ebuild
cufflinks-1.3.0-r1.ebuild cufflinks-2.2.1.ebuild
  Log:
  sci-biology/cufflinks: Add upper limit for boost dep as forced by upstream, 
#535716
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  ChangesPath
1.10 sci-biology/cufflinks/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.10&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.10&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?r1=1.9&r2=1.10

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog   2 Oct 2014 08:01:05 -   1.9
+++ ChangeLog   8 Jan 2015 07:35:53 -   1.10
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/cufflinks
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.9 
2014/10/02 08:01:05 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.10 
2015/01/08 07:35:53 jlec Exp $
+
+  08 Jan 2015; Justin Lecher  cufflinks-1.3.0-r1.ebuild,
+  cufflinks-2.2.1.ebuild, cufflinks-2.2.1-r1.ebuild:
+  Add upper limit for boost dep as forced by upstream, #535716
 
 *cufflinks-2.2.1-r1 (02 Oct 2014)
 



1.2  sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild?r1=1.1&r2=1.2

Index: cufflinks-2.2.1-r1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- cufflinks-2.2.1-r1.ebuild   2 Oct 2014 08:01:05 -   1.1
+++ cufflinks-2.2.1-r1.ebuild   8 Jan 2015 07:35:53 -   1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v 1.1 
2014/10/02 08:01:05 jlec Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v 1.2 
2015/01/08 07:35:53 jlec Exp $
 
 EAPI=5
 
@@ -26,6 +26,7 @@
=dev-libs/boost-1.47.0:=
+   http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild?rev=1.3&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild?rev=1.3&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild?r1=1.2&r2=1.3

Index: cufflinks-1.3.0-r1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- cufflinks-1.3.0-r1.ebuild   25 Sep 2014 15:21:35 -  1.2
+++ cufflinks-1.3.0-r1.ebuild   8 Jan 2015 07:35:53 -   1.3
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.2 
2014/09/25 15:21:35 jlec Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.3 
2015/01/08 07:35:53 jlec Exp $
 
 EAPI=5
 
@@ -20,7 +20,7 @@
 DEPEND="
>=sci-biology/samtools-0.1.18
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild?r1=1.1&r2=1.2

Index: cufflinks-2.2.1.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- cufflinks-2.2.1.ebuild  25 Sep 2014 16:11:26 -  1.1
+

[gentoo-commits] proj/portage:master commit in: pym/portage/emaint/modules/sync/, pym/portage/sync/, pym/_emerge/

2015-01-07 Thread Zac Medico

commit: b75a834d421fecc1a3962c047cce9f110bf7da70
Author: Zac Medico  gentoo  org>
AuthorDate: Wed Jan  7 10:06:10 2015 +
Commit: Zac Medico  gentoo  org>
CommitDate: Thu Jan  8 07:06:21 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/portage.git;a=commit;h=b75a834d

Use _SUBMODULE_PATH_MAP keys for option choices

Fix commit c8a850685232b938cf0896fc2d80e72d57edad17 to re-use the keys
from _SUBMODULE_PATH_MAP for option choices.

Fixes: c8a850685232 ("Add --sync-submodule  (534070)")
Suggested-by: Brian Dolbec  gentoo.org>
Acked-by: Brian Dolbec  gentoo.org>

---
 pym/_emerge/main.py | 3 ++-
 pym/portage/emaint/modules/sync/__init__.py | 4 +++-
 pym/portage/sync/__init__.py| 9 -
 pym/portage/sync/syncbase.py| 7 +--
 4 files changed, 14 insertions(+), 9 deletions(-)

diff --git a/pym/_emerge/main.py b/pym/_emerge/main.py
index 93c1a15..3fcfcbf 100644
--- a/pym/_emerge/main.py
+++ b/pym/_emerge/main.py
@@ -20,6 +20,7 @@ portage.proxy.lazyimport.lazyimport(globals(),
 )
 from portage import os
 from portage.util._argparse import ArgumentParser
+from portage.sync import _SUBMODULE_PATH_MAP
 
 if sys.hexversion >= 0x300:
long = int
@@ -636,7 +637,7 @@ def parse_opts(tmpcmdline, silent=False):
"--sync-submodule": {
"help": ("Restrict sync to the specified 
submodule(s)."
" (--sync action only)"),
-   "choices" : ("glsa", "news", "profiles"),
+   "choices" : tuple(_SUBMODULE_PATH_MAP),
"action" : "append",
},
 

diff --git a/pym/portage/emaint/modules/sync/__init__.py 
b/pym/portage/emaint/modules/sync/__init__.py
index 620861f..2fc8d34 100644
--- a/pym/portage/emaint/modules/sync/__init__.py
+++ b/pym/portage/emaint/modules/sync/__init__.py
@@ -1,6 +1,8 @@
 # Copyright 2014-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
+from sync import _SUBMODULE_PATH_MAP
+
 doc = """Check repos.conf settings and sync repositories."""
 __doc__ = doc[:]
 
@@ -43,7 +45,7 @@ module_spec = {
"long": "--sync-submodule",
"help": ("(sync module only): Restrict 
sync "
"to the specified 
submodule(s)"),
-   "choices": ("glsa", "news", "profiles"),
+   "choices": tuple(_SUBMODULE_PATH_MAP),
"action": "append",
"dest": "sync_submodule",
},

diff --git a/pym/portage/sync/__init__.py b/pym/portage/sync/__init__.py
index 0f6c566..51bf051 100644
--- a/pym/portage/sync/__init__.py
+++ b/pym/portage/sync/__init__.py
@@ -1,12 +1,19 @@
-# Copyright 2014 Gentoo Foundation
+# Copyright 2014-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 import os
 
+from portage import OrderedDict
 from portage.module import Modules
 from portage.sync.controller import SyncManager
 from portage.sync.config_checks import check_type
 
+_SUBMODULE_PATH_MAP = OrderedDict([
+   ('glsa', 'metadata/glsa'),
+   ('news', 'metadata/news'),
+   ('profiles', 'profiles'),
+])
+
 path = os.path.join(os.path.dirname(__file__), "modules")
 # initial development debug info
 #print("module path:", path)

diff --git a/pym/portage/sync/syncbase.py b/pym/portage/sync/syncbase.py
index 9506616..04db2d0 100644
--- a/pym/portage/sync/syncbase.py
+++ b/pym/portage/sync/syncbase.py
@@ -11,12 +11,7 @@ import os
 
 import portage
 from portage.util import writemsg_level
-
-_SUBMODULE_PATH_MAP = {
-   'glsa': 'metadata/glsa',
-   'news': 'metadata/news',
-   'profiles': 'profiles',
-}
+from . import _SUBMODULE_PATH_MAP
 
 class SyncBase(object):
'''Base Sync class for subclassing'''

[gentoo-commits] gentoo-x86 commit in dev-ruby/database_cleaner: ChangeLog database_cleaner-1.4.0.ebuild

2015-01-07 Thread Hans de Graaff (graaff)

graaff  15/01/08 07:11:21

  Modified: ChangeLog
  Added:database_cleaner-1.4.0.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0x8883FA56A308A8D7!)

Revision  ChangesPath
1.7  dev-ruby/database_cleaner/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/database_cleaner/ChangeLog?rev=1.7&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/database_cleaner/ChangeLog?rev=1.7&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/database_cleaner/ChangeLog?r1=1.6&r2=1.7

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-ruby/database_cleaner/ChangeLog,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- ChangeLog   24 May 2014 05:48:53 -  1.6
+++ ChangeLog   8 Jan 2015 07:11:21 -   1.7
@@ -1,6 +1,12 @@
 # ChangeLog for dev-ruby/database_cleaner
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-ruby/database_cleaner/ChangeLog,v 1.6 
2014/05/24 05:48:53 graaff Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-ruby/database_cleaner/ChangeLog,v 1.7 
2015/01/08 07:11:21 graaff Exp $
+
+*database_cleaner-1.4.0 (08 Jan 2015)
+
+  08 Jan 2015; Hans de Graaff 
+  +database_cleaner-1.4.0.ebuild:
+  Version bump.
 
 *database_cleaner-1.3.0 (24 May 2014)
 



1.1  dev-ruby/database_cleaner/database_cleaner-1.4.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/database_cleaner/database_cleaner-1.4.0.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/database_cleaner/database_cleaner-1.4.0.ebuild?rev=1.1&content-type=text/plain

Index: database_cleaner-1.4.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/dev-ruby/database_cleaner/database_cleaner-1.4.0.ebuild,v
 1.1 2015/01/08 07:11:21 graaff Exp $

EAPI=5

USE_RUBY="ruby19 ruby20 ruby21"

RUBY_FAKEGEM_RECIPE_DOC="rdoc"
RUBY_FAKEGEM_TASK_DOC="examples"

RUBY_FAKEGEM_EXTRADOC="History.rdoc README.markdown TODO"

# There are specs and features but they all require configured databases.
RUBY_FAKEGEM_RECIPE_TEST="none"

inherit ruby-fakegem

DESCRIPTION="Strategies for cleaning databases"
HOMEPAGE="http://github.com/bmabey/database_cleaner";

LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~arm ~x86"
IUSE=""

[gentoo-commits] proj/sci:master commit in: virtual/blas/

2015-01-07 Thread Justin Lecher

commit: e84e132b58fc2d74299beeb412a037f17176d348
Author: Soren Harward  gmail  com>
AuthorDate: Thu Jan  8 02:59:29 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Jan  8 02:59:29 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e84e132b

Upping eigen dependency for virtual/blas

Fixes #309

---
 virtual/blas/blas-2.1-r3.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/virtual/blas/blas-2.1-r3.ebuild b/virtual/blas/blas-2.1-r3.ebuild
index f06189e..a6d07af 100644
--- a/virtual/blas/blas-2.1-r3.ebuild
+++ b/virtual/blas/blas-2.1-r3.ebuild
@@ -24,7 +24,7 @@ RDEPEND="
)
|| (
>=sci-libs/blas-reference-20131116-r1[int64?]
-   >=dev-cpp/eigen-3.1.2
+   >=dev-cpp/eigen-3.1.4
sci-libs/atlas[fortran]
>=sci-libs/openblas-0.2.11[int64?]
>=sci-libs/acml-4.4

[gentoo-commits] proj/sci:master commit in: /

2015-01-07 Thread Justin Lecher

commit: 67cfe892eb32b5c8a2681d9fa3d98ce6391bd2fe
Author: Justin  gentoo  org>
AuthorDate: Thu Jan  8 06:52:01 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Jan  8 06:52:01 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=67cfe892

Merge pull request #310 from stharward/master

Upping eigen dependency for virtual/blas


 virtual/blas/blas-2.1-r3.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

[gentoo-commits] proj/sci:master commit in: /

2015-01-07 Thread Justin Lecher

commit: 3163fd540c987180bf5a4029bdb4199296661bd9
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jan  8 06:57:09 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Jan  8 06:57:09 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3163fd54

Merge remote-tracking branch 'github/master'

* github/master:
  Upping eigen dependency for virtual/blas


 virtual/blas/blas-2.1-r3.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

[gentoo-commits] gentoo-x86 commit in media-libs/exiftool: ChangeLog exiftool-9.76.ebuild exiftool-9.72.ebuild exiftool-9.68.ebuild exiftool-9.69.ebuild exiftool-9.77.ebuild exiftool-9.75.ebuild exift

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 05:21:58

  Modified: ChangeLog
  Removed:  exiftool-9.76.ebuild exiftool-9.72.ebuild
exiftool-9.68.ebuild exiftool-9.69.ebuild
exiftool-9.77.ebuild exiftool-9.75.ebuild
exiftool-9.12.ebuild exiftool-9.74.ebuild
exiftool-9.70.ebuild
  Log:
  Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.157media-libs/exiftool/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.157&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.157&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?r1=1.156&r2=1.157

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v
retrieving revision 1.156
retrieving revision 1.157
diff -u -r1.156 -r1.157
--- ChangeLog   8 Jan 2015 05:21:06 -   1.156
+++ ChangeLog   8 Jan 2015 05:21:58 -   1.157
@@ -1,6 +1,12 @@
 # ChangeLog for media-libs/exiftool
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.156 
2015/01/08 05:21:06 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.157 
2015/01/08 05:21:58 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  -exiftool-9.12.ebuild,
+  -exiftool-9.68.ebuild, -exiftool-9.69.ebuild, -exiftool-9.70.ebuild,
+  -exiftool-9.72.ebuild, -exiftool-9.74.ebuild, -exiftool-9.75.ebuild,
+  -exiftool-9.76.ebuild, -exiftool-9.77.ebuild:
+  Remove old.
 
   08 Jan 2015; Tim Harder  exiftool-9.78.ebuild:
   Stabilize for amd64, ppc, ppc64, and x86.

[gentoo-commits] gentoo-x86 commit in media-libs/exiftool: exiftool-9.78.ebuild ChangeLog

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 05:21:06

  Modified: exiftool-9.78.ebuild ChangeLog
  Log:
  Stabilize for amd64, ppc, ppc64, and x86.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.2  media-libs/exiftool/exiftool-9.78.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild?r1=1.1&r2=1.2

Index: exiftool-9.78.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- exiftool-9.78.ebuild14 Dec 2014 06:10:36 -  1.1
+++ exiftool-9.78.ebuild8 Jan 2015 05:21:06 -   1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild,v 
1.1 2014/12/14 06:10:36 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/exiftool-9.78.ebuild,v 
1.2 2015/01/08 05:21:06 radhermit Exp $
 
 EAPI=5
 
@@ -13,7 +13,7 @@
 SRC_URI="http://www.sno.phy.queensu.ca/~phil/exiftool/${MY_P}.tar.gz";
 
 SLOT="0"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~x64-macos"
+KEYWORDS="amd64 ppc ppc64 x86 ~x64-macos"
 
 SRC_TEST="do"
 



1.156media-libs/exiftool/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.156&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.156&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?r1=1.155&r2=1.156

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v
retrieving revision 1.155
retrieving revision 1.156
diff -u -r1.155 -r1.156
--- ChangeLog   8 Jan 2015 05:18:37 -   1.155
+++ ChangeLog   8 Jan 2015 05:21:06 -   1.156
@@ -1,6 +1,9 @@
 # ChangeLog for media-libs/exiftool
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.155 
2015/01/08 05:18:37 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.156 
2015/01/08 05:21:06 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  exiftool-9.78.ebuild:
+  Stabilize for amd64, ppc, ppc64, and x86.
 
 *exiftool-9.80 (08 Jan 2015)

[gentoo-commits] gentoo-x86 commit in media-libs/exiftool: ChangeLog exiftool-9.80.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 05:18:37

  Modified: ChangeLog
  Added:exiftool-9.80.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.155media-libs/exiftool/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.155&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?rev=1.155&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/ChangeLog?r1=1.154&r2=1.155

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v
retrieving revision 1.154
retrieving revision 1.155
diff -u -r1.154 -r1.155
--- ChangeLog   6 Jan 2015 16:14:43 -   1.154
+++ ChangeLog   8 Jan 2015 05:18:37 -   1.155
@@ -1,6 +1,11 @@
 # ChangeLog for media-libs/exiftool
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.154 
2015/01/06 16:14:43 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/ChangeLog,v 1.155 
2015/01/08 05:18:37 radhermit Exp $
+
+*exiftool-9.80 (08 Jan 2015)
+
+  08 Jan 2015; Tim Harder  +exiftool-9.80.ebuild:
+  Version bump.
 
 *exiftool-9.79 (06 Jan 2015)
 



1.1  media-libs/exiftool/exiftool-9.80.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/exiftool-9.80.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/exiftool/exiftool-9.80.ebuild?rev=1.1&content-type=text/plain

Index: exiftool-9.80.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/media-libs/exiftool/exiftool-9.80.ebuild,v 
1.1 2015/01/08 05:18:37 radhermit Exp $

EAPI=5

MY_PN=Image-ExifTool
MY_P=${MY_PN}-${PV}
inherit perl-module

DESCRIPTION="Read and write meta information in image, audio and video files"
HOMEPAGE="http://www.sno.phy.queensu.ca/~phil/exiftool/ ${HOMEPAGE}"
SRC_URI="http://www.sno.phy.queensu.ca/~phil/exiftool/${MY_P}.tar.gz";

SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~x64-macos"

SRC_TEST="do"

src_install() {
perl-module_src_install
dohtml -r html/
}

[gentoo-commits] gentoo-x86 commit in media-libs/libzen: ChangeLog libzen-0.4.30.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:55:47

  Modified: ChangeLog libzen-0.4.30.ebuild
  Log:
  Stabilize for amd64/x86 (bug #535468).
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.61 media-libs/libzen/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/ChangeLog?rev=1.61&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/ChangeLog?rev=1.61&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/ChangeLog?r1=1.60&r2=1.61

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/libzen/ChangeLog,v
retrieving revision 1.60
retrieving revision 1.61
diff -u -r1.60 -r1.61
--- ChangeLog   11 Dec 2014 05:22:54 -  1.60
+++ ChangeLog   8 Jan 2015 04:55:47 -   1.61
@@ -1,6 +1,9 @@
 # ChangeLog for media-libs/libzen
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/libzen/ChangeLog,v 1.60 
2014/12/11 05:22:54 radhermit Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-libs/libzen/ChangeLog,v 1.61 
2015/01/08 04:55:47 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  libzen-0.4.30.ebuild:
+  Stabilize for amd64/x86 (bug #535468).
 
   11 Dec 2014; Tim Harder  metadata.xml:
   Add myself as the maintainer.



1.2  media-libs/libzen/libzen-0.4.30.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild?r1=1.1&r2=1.2

Index: libzen-0.4.30.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- libzen-0.4.30.ebuild25 Nov 2014 23:07:59 -  1.1
+++ libzen-0.4.30.ebuild8 Jan 2015 04:55:47 -   1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild,v 
1.1 2014/11/25 23:07:59 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-libs/libzen/libzen-0.4.30.ebuild,v 
1.2 2015/01/08 04:55:47 radhermit Exp $
 
 EAPI=5
 
@@ -13,7 +13,7 @@
 
 LICENSE="ZLIB"
 SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 x86"
 IUSE="doc static-libs"
 
 DEPEND="virtual/pkgconfig

[gentoo-commits] gentoo-x86 commit in media-plugins/gimp-gmic: ChangeLog gimp-gmic-1.6.0.3.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:53:37

  Modified: ChangeLog
  Added:gimp-gmic-1.6.0.3.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.50 media-plugins/gimp-gmic/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?rev=1.50&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?rev=1.50&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?r1=1.49&r2=1.50

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v
retrieving revision 1.49
retrieving revision 1.50
diff -u -r1.49 -r1.50
--- ChangeLog   8 Jan 2015 04:44:15 -   1.49
+++ ChangeLog   8 Jan 2015 04:53:37 -   1.50
@@ -1,6 +1,11 @@
 # ChangeLog for media-plugins/gimp-gmic
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v 1.49 
2015/01/08 04:44:15 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v 1.50 
2015/01/08 04:53:37 radhermit Exp $
+
+*gimp-gmic-1.6.0.3 (08 Jan 2015)
+
+  08 Jan 2015; Tim Harder  +gimp-gmic-1.6.0.3.ebuild:
+  Version bump.
 
   08 Jan 2015; Tim Harder  -gimp-gmic-1.5.8.6.ebuild,
   -gimp-gmic-1.5.9.1.ebuild, -gimp-gmic-1.5.9.2-r1.ebuild,



1.1  media-plugins/gimp-gmic/gimp-gmic-1.6.0.3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/gimp-gmic-1.6.0.3.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/gimp-gmic-1.6.0.3.ebuild?rev=1.1&content-type=text/plain

Index: gimp-gmic-1.6.0.3.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/gimp-gmic-1.6.0.3.ebuild,v 1.1 
2015/01/08 04:53:37 radhermit Exp $

EAPI=5

inherit eutils toolchain-funcs flag-o-matic

DESCRIPTION="G'MIC GIMP plugin"
HOMEPAGE="http://gmic.sourceforge.net/gimp.shtml";
SRC_URI="mirror://sourceforge/gmic/gmic_${PV}.tar.gz"

LICENSE="CeCILL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="openmp"

RDEPEND="
>=media-gfx/gimp-2.4.0
media-libs/libpng:0=
sci-libs/fftw:3.0[threads]
sys-libs/zlib
"
DEPEND="${RDEPEND}"

S=${WORKDIR}/gmic-${PV}/src

pkg_pretend() {
if use openmp ; then
tc-has-openmp || die "Please switch to an openmp compatible 
compiler"
fi

if ! test-flag-CXX -std=c++11 ; then
die "You need at least GCC 4.7.x or Clang >= 3.3 for 
C++11-specific compiler flags"
fi
}

src_prepare() {
cp "${FILESDIR}"/gmic-1.6.0.2-makefile.patch "${WORKDIR}" || die
edos2unix "${WORKDIR}"/gmic-1.6.0.2-makefile.patch
epatch "${WORKDIR}"/gmic-1.6.0.2-makefile.patch

if ! use openmp ; then
sed -i -r "s/^(OPENMP_(CFLAGS|LIBS) =).*/\1/" Makefile || die
fi
}

src_compile() {
emake CC="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" OPT_CFLAGS= DEBUG_CFLAGS= 
gimp
}

src_install() {
emake DESTDIR="${D}" install-gimp
dodoc ../README
}

pkg_postinst() {
elog "The G'MIC plugin is accessible from the menu:"
elog "Filters -> G'MIC"
}

[gentoo-commits] gentoo-x86 commit in media-gfx/gmic: ChangeLog gmic-1.6.0.3.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:48:46

  Modified: ChangeLog
  Added:gmic-1.6.0.3.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.57 media-gfx/gmic/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.57&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.57&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?r1=1.56&r2=1.57

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v
retrieving revision 1.56
retrieving revision 1.57
diff -u -r1.56 -r1.57
--- ChangeLog   8 Jan 2015 04:41:57 -   1.56
+++ ChangeLog   8 Jan 2015 04:48:46 -   1.57
@@ -1,6 +1,11 @@
 # ChangeLog for media-gfx/gmic
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.56 2015/01/08 
04:41:57 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.57 2015/01/08 
04:48:46 radhermit Exp $
+
+*gmic-1.6.0.3 (08 Jan 2015)
+
+  08 Jan 2015; Tim Harder  +gmic-1.6.0.3.ebuild:
+  Version bump.
 
   08 Jan 2015; Tim Harder  -gmic-1.5.8.6.ebuild,
   -gmic-1.5.9.1.ebuild, -gmic-1.5.9.2-r1.ebuild,



1.1  media-gfx/gmic/gmic-1.6.0.3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/gmic-1.6.0.3.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/gmic-1.6.0.3.ebuild?rev=1.1&content-type=text/plain

Index: gmic-1.6.0.3.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/gmic-1.6.0.3.ebuild,v 1.1 
2015/01/08 04:48:46 radhermit Exp $

EAPI=5

inherit eutils toolchain-funcs bash-completion-r1 flag-o-matic

DESCRIPTION="GREYC's Magic Image Converter"
HOMEPAGE="http://gmic.sourceforge.net/";
SRC_URI="mirror://sourceforge/${PN}/${PN}_${PV}.tar.gz"

LICENSE="CeCILL-2 FDL-1.3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="ffmpeg fftw graphicsmagick jpeg opencv openexr openmp png tiff X zlib"

DEPEND="
fftw? ( sci-libs/fftw:3.0[threads] )
graphicsmagick? ( media-gfx/graphicsmagick )
jpeg? ( virtual/jpeg )
opencv? ( >=media-libs/opencv-2.3.1a-r1 )
openexr? (
media-libs/ilmbase
media-libs/openexr
)
png? ( media-libs/libpng )
tiff? ( media-libs/tiff )
X? (
x11-libs/libX11
x11-libs/libXext
)
zlib? ( sys-libs/zlib )"
RDEPEND="${DEPEND}
ffmpeg? ( media-video/ffmpeg:0 )
"

S=${WORKDIR}/${P}/src

pkg_pretend() {
if use openmp ; then
tc-has-openmp || die "Please switch to an openmp compatible 
compiler"
fi

if ! test-flag-CXX -std=c++11 ; then
die "You need at least GCC 4.7.x or Clang >= 3.3 for 
C++11-specific compiler flags"
fi
}

src_prepare() {
cp "${FILESDIR}"/${PN}-1.6.0.2-makefile.patch "${WORKDIR}" || die
edos2unix "${WORKDIR}"/${PN}-1.6.0.2-makefile.patch
epatch "${WORKDIR}"/${PN}-1.6.0.2-makefile.patch

for i in fftw jpeg opencv openmp png tiff zlib ; do
use $i || { sed -i -r "s/^(${i}_(CFLAGS|LIBS) =).*/\1/I" 
Makefile || die ; }
done

use graphicsmagick || { sed -i -r "s/^(MAGICK_(CFLAGS|LIBS) =).*/\1/" 
Makefile || die ; }
use openexr || { sed -i -r "s/^(EXR_(CFLAGS|LIBS) =).*/\1/" Makefile || 
die ; }

if ! use X ; then
sed -i -r "s/^((X11|XSHM)_(CFLAGS|LIBS) =).*/\1/" Makefile || 
die

# disable display capabilities when X support is disabled
append-cxxflags -Dcimg_display=0
fi
}

src_compile() {
emake AR="$(tc-getAR)" CC="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" \
LIB="$(get_libdir)" OPT_CFLAGS= DEBUG_CFLAGS= linux lib
emake man bashcompletion
}

src_install() {
emake DESTDIR="${D}" LIB="$(get_libdir)" install-bin install-lib 
install-man install-bash
dodoc ../README
}

[gentoo-commits] gentoo-x86 commit in media-plugins/gimp-gmic/files: gmic-1.5.9.2-makefile.patch gmic-1.5.8.4-makefile.patch gmic-1.5.9.1-makefile.patch

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:44:16

  Removed:  gmic-1.5.9.2-makefile.patch
gmic-1.5.8.4-makefile.patch
gmic-1.5.9.1-makefile.patch
  Log:
  Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

[gentoo-commits] gentoo-x86 commit in media-plugins/gimp-gmic: ChangeLog gimp-gmic-1.5.8.6.ebuild gimp-gmic-1.5.9.1.ebuild gimp-gmic-1.5.9.2-r1.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:44:15

  Modified: ChangeLog
  Removed:  gimp-gmic-1.5.8.6.ebuild gimp-gmic-1.5.9.1.ebuild
gimp-gmic-1.5.9.2-r1.ebuild
  Log:
  Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.49 media-plugins/gimp-gmic/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?rev=1.49&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?rev=1.49&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-plugins/gimp-gmic/ChangeLog?r1=1.48&r2=1.49

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v
retrieving revision 1.48
retrieving revision 1.49
diff -u -r1.48 -r1.49
--- ChangeLog   8 Dec 2014 03:23:48 -   1.48
+++ ChangeLog   8 Jan 2015 04:44:15 -   1.49
@@ -1,6 +1,12 @@
 # ChangeLog for media-plugins/gimp-gmic
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v 1.48 
2014/12/08 03:23:48 radhermit Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-plugins/gimp-gmic/ChangeLog,v 1.49 
2015/01/08 04:44:15 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  -gimp-gmic-1.5.8.6.ebuild,
+  -gimp-gmic-1.5.9.1.ebuild, -gimp-gmic-1.5.9.2-r1.ebuild,
+  -files/gmic-1.5.8.4-makefile.patch, -files/gmic-1.5.9.1-makefile.patch,
+  -files/gmic-1.5.9.2-makefile.patch:
+  Remove old.
 
 *gimp-gmic-1.6.0.2-r1 (08 Dec 2014)

[gentoo-commits] gentoo-x86 commit in media-gfx/gmic/files: gmic-1.5.9.2-makefile.patch gmic-1.5.8.4-makefile.patch gmic-1.5.8.2-ffmpeg.patch gmic-1.5.9.1-makefile.patch

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:41:57

  Removed:  gmic-1.5.9.2-makefile.patch
gmic-1.5.8.4-makefile.patch
gmic-1.5.8.2-ffmpeg.patch
gmic-1.5.9.1-makefile.patch
  Log:
  Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

[gentoo-commits] gentoo-x86 commit in media-gfx/gmic: ChangeLog gmic-1.5.9.2-r1.ebuild gmic-1.5.9.1.ebuild gmic-1.5.8.6.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:41:57

  Modified: ChangeLog
  Removed:  gmic-1.5.9.2-r1.ebuild gmic-1.5.9.1.ebuild
gmic-1.5.8.6.ebuild
  Log:
  Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.56 media-gfx/gmic/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.56&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.56&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?r1=1.55&r2=1.56

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v
retrieving revision 1.55
retrieving revision 1.56
diff -u -r1.55 -r1.56
--- ChangeLog   8 Jan 2015 04:41:01 -   1.55
+++ ChangeLog   8 Jan 2015 04:41:57 -   1.56
@@ -1,6 +1,12 @@
 # ChangeLog for media-gfx/gmic
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.55 2015/01/08 
04:41:01 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.56 2015/01/08 
04:41:57 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  -gmic-1.5.8.6.ebuild,
+  -gmic-1.5.9.1.ebuild, -gmic-1.5.9.2-r1.ebuild,
+  -files/gmic-1.5.8.2-ffmpeg.patch, -files/gmic-1.5.8.4-makefile.patch,
+  -files/gmic-1.5.9.1-makefile.patch, -files/gmic-1.5.9.2-makefile.patch:
+  Remove old.
 
   08 Jan 2015; Tim Harder  gmic-1.6.0.2.ebuild:
   Append to C++ flags instead of C preprocessor flags (fixes bug #533016).

[gentoo-commits] gentoo-x86 commit in media-gfx/gmic: ChangeLog gmic-1.6.0.2.ebuild

2015-01-07 Thread Tim Harder (radhermit)

radhermit15/01/08 04:41:01

  Modified: ChangeLog gmic-1.6.0.2.ebuild
  Log:
  Append to C++ flags instead of C preprocessor flags (fixes bug #533016).
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
4AB3E85B4F064CA3)

Revision  ChangesPath
1.55 media-gfx/gmic/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.55&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?rev=1.55&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/ChangeLog?r1=1.54&r2=1.55

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v
retrieving revision 1.54
retrieving revision 1.55
diff -u -r1.54 -r1.55
--- ChangeLog   3 Dec 2014 08:04:56 -   1.54
+++ ChangeLog   8 Jan 2015 04:41:01 -   1.55
@@ -1,6 +1,9 @@
 # ChangeLog for media-gfx/gmic
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.54 2014/12/03 
08:04:56 radhermit Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/ChangeLog,v 1.55 2015/01/08 
04:41:01 radhermit Exp $
+
+  08 Jan 2015; Tim Harder  gmic-1.6.0.2.ebuild:
+  Append to C++ flags instead of C preprocessor flags (fixes bug #533016).
 
 *gmic-1.6.0.2 (03 Dec 2014)
 



1.2  media-gfx/gmic/gmic-1.6.0.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild?r1=1.1&r2=1.2

Index: gmic-1.6.0.2.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- gmic-1.6.0.2.ebuild 3 Dec 2014 08:04:56 -   1.1
+++ gmic-1.6.0.2.ebuild 8 Jan 2015 04:41:01 -   1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild,v 1.1 
2014/12/03 08:04:56 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/gmic/gmic-1.6.0.2.ebuild,v 1.2 
2015/01/08 04:41:01 radhermit Exp $
 
 EAPI=5
 
@@ -61,7 +61,7 @@
sed -i -r "s/^((X11|XSHM)_(CFLAGS|LIBS) =).*/\1/" Makefile || 
die
 
# disable display capabilities when X support is disabled
-   append-cppflags -Dcimg_display=0
+   append-cxxflags -Dcimg_display=0
fi
 }

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/gkeys/

2015-01-07 Thread Brian Dolbec

commit: b7f9364cb0952f2e06f94299400d2f23b629553d
Author: Brian Dolbec  gentoo  org>
AuthorDate: Thu Jan  8 03:43:10 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Thu Jan  8 03:43:10 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=b7f9364c

gkeys: Finally fix all the unicode printing errors

---
 gkeys/gkeys/actions.py | 20 +++-
 gkeys/gkeys/base.py| 10 +-
 2 files changed, 16 insertions(+), 14 deletions(-)

diff --git a/gkeys/gkeys/actions.py b/gkeys/gkeys/actions.py
index de72000..eef338e 100644
--- a/gkeys/gkeys/actions.py
+++ b/gkeys/gkeys/actions.py
@@ -25,6 +25,8 @@ from collections import defaultdict
 from json import load
 from shutil import rmtree
 
+from pyGPG.status import _unicode_encode
+
 from gkeys.lib import GkeysGPG
 from gkeys.seedhandler import SeedHandler
 from gkeys.gkey import GKEY
@@ -240,15 +242,15 @@ class Actions(object):
 if self.config.options['print_results']:
 if print_key:
 print()
-print("Nick.:", key.nick)
-print("Name.:", key.name)
-print("Keydir...:", key.keydir)
+print("Nick.:", _unicode_encode(key.nick))
+print("Name.:", _unicode_encode(key.name))
+print("Keydir...:", _unicode_encode(key.keydir))
 c = 0
 for line in result.split('\n'):
 if c == 0:
-print("Gpg info.:", line)
+print("Gpg info.:", _unicode_encode(line))
 else:
-print("  ", line)
+print("  ", _unicode_encode(line))
 c += 1
 self.logger.debug("data output:\n" + str(result))
 return (True, result)
@@ -289,7 +291,7 @@ class Actions(object):
   str(result.failed))
 if self.config.options['print_results']:
 for result in results[key.name]:
-print("key desired:", key.name, ", key added:",
+print("key desired:", _unicode_encode(key.name), ", 
key added:",
 result.username, ", succeeded:",
 not result.failed, ", fingerprint:", 
result.fingerprint)
 self.logger.debug("stderr_out: " + 
str(result.stderr_out))
@@ -380,7 +382,7 @@ class Actions(object):
 for g in results:
 pub_pass = {}
 for key in results[g]:
-self.output('', key.pretty_print())
+self.output('', _unicode_encode(key.pretty_print()))
 
 if key.key is "PUB":
 pub_pass = {
@@ -539,7 +541,7 @@ class Actions(object):
 results[gkey.name] = self.gpg.add_key(gkey)
 if self.config.options['print_results']:
 for result in results[gkey.name]:
-print("key desired:", gkey.name, ", key added:",
+print("key desired:", _unicode_encode(gkey.name), ", 
key added:",
 result.username, ", succeeded:",
 not result.failed, ", fingerprint:", 
result.fingerprint)
 self.logger.debug("stderr_out: " + 
str(result.stderr_out))
@@ -547,7 +549,7 @@ class Actions(object):
 self.logger.debug("ACTIONS: importkey; 
result.failed = " + str(result.failed))
 failed.append(gkey)
 if not results[gkey.name][0].failed:
-print("Importing: ", gkey.name)
+print("Importing: ", _unicode_encode(gkey.name))
 self.logger.debug("ACTIONS: importkey; importing key: %s", 
gkey.name)
 _keyring = os.path.join(catdir, args.keyring + '.gpg')
 self.gpg.add_to_keyring(gkey, catdir, _keyring)

diff --git a/gkeys/gkeys/base.py b/gkeys/gkeys/base.py
index 46f8f2f..1a80a03 100644
--- a/gkeys/gkeys/base.py
+++ b/gkeys/gkeys/base.py
@@ -17,7 +17,7 @@ from __future__ import print_function
 import argparse
 import sys
 
-from pyGPG.status import _unicode_decode
+from pyGPG.status import _unicode_encode
 from gkeys import fileops
 from gkeys.log import log_levels, set_logger
 
@@ -315,16 +315,16 @@ class CliBase(object):
 def output_results(results, header=None):
 # super simple output for the time being
 if header:
-print(_unicode_decode(header))
+print(_unicode_encode(header))
 for msg in results:
 if type(msg) in [str, unicode]:
-print('   ', _unicode_decode(msg))
+print('   ', _unicode_encode(msg))
 else:
 try:
-print("\n".join([_unicode_decode(x.pretty_prin

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/gkeys/, gkeys-gen/gkeygen/, py2man/

2015-01-07 Thread Brian Dolbec

commit: 807bb140b51eb75ac25474ff76577b09be04b1d1
Author: Brian Dolbec  gentoo  org>
AuthorDate: Thu Jan  8 03:42:26 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Thu Jan  8 03:42:26 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=807bb140

gkeys, gkeys-gen: Add --version option

---
 gkeys-gen/gkeygen/__init__.py | 2 +-
 gkeys-gen/gkeygen/cli.py  | 2 ++
 gkeys/gkeys/__init__.py   | 2 +-
 gkeys/gkeys/base.py   | 3 +++
 gkeys/gkeys/cli.py| 2 ++
 py2man/command.template   | 2 +-
 py2man/options.py | 2 ++
 7 files changed, 12 insertions(+), 3 deletions(-)

diff --git a/gkeys-gen/gkeygen/__init__.py b/gkeys-gen/gkeygen/__init__.py
index e990779..ea87b6a 100644
--- a/gkeys-gen/gkeygen/__init__.py
+++ b/gkeys-gen/gkeygen/__init__.py
@@ -15,7 +15,7 @@ for cmd in Available_Actions:
 subdata[cmd] = Action_Map[cmd]['desc']
 
 Gkeys_Map = {
-'options': ['help', 'config', 'debug'],
+'options': ['help', 'config', 'debug', 'version'],
 'desc': 'OpenPGP/GPG key generator tool',
 'long_desc': '''Gentoo Keys (gkeys) is a Python based project that aims to 
manage
 the GPG keys used for validation on users and Gentoo's infrastracutre servers.

diff --git a/gkeys-gen/gkeygen/cli.py b/gkeys-gen/gkeygen/cli.py
index 561bf9f..f522814 100644
--- a/gkeys-gen/gkeygen/cli.py
+++ b/gkeys-gen/gkeygen/cli.py
@@ -7,6 +7,7 @@ from __future__ import print_function
 import os
 import sys
 
+from gkeys import __version__
 from gkeys.config import GKeysConfig
 from gkeys.base import CliBase
 from gkeygen.actions import Actions, Available_Actions, Action_Map
@@ -35,6 +36,7 @@ class Main(CliBase):
 'description': 'Gentoo Keys GPG key generator program',
 'epilog': '''CAUTION: adding UNTRUSTED keys can be HAZARDOUS to 
your system!'''
 }
+self.version = __version__
 
 
 def __call__(self, args=None):

diff --git a/gkeys/gkeys/__init__.py b/gkeys/gkeys/__init__.py
index 503d359..d148872 100644
--- a/gkeys/gkeys/__init__.py
+++ b/gkeys/gkeys/__init__.py
@@ -17,7 +17,7 @@ for cmd in Available_Actions:
 subdata[cmd] = Action_Map[cmd]['desc']
 
 Gkeys_Map = {
-'options': ['help', 'config', 'debug'],
+'options': ['help', 'config', 'debug', 'version'],
 'desc': 'OpenPGP/GPG key management tool',
 'long_desc': '''Gentoo Keys (gkeys) is a Python based project that aims to 
manage
 the GPG keys used for validation on users and Gentoo's infrastracutre servers.

diff --git a/gkeys/gkeys/base.py b/gkeys/gkeys/base.py
index 65ad9cc..46f8f2f 100644
--- a/gkeys/gkeys/base.py
+++ b/gkeys/gkeys/base.py
@@ -44,6 +44,7 @@ class CliBase(object):
 self.seeds = None
 self.actions = None
 self.logger = None
+self.version = None
 
 
 @staticmethod
@@ -209,6 +210,8 @@ class CliBase(object):
 parser.add_argument('-D', '--debug', default='DEBUG',
 choices=list(log_levels),
 help='The logging level to set for the logfile')
+parser.add_argument('-V', '--version', action = 'version',
+  version = self.version)
 
 
 subparsers = parser.add_subparsers(

diff --git a/gkeys/gkeys/cli.py b/gkeys/gkeys/cli.py
index 8ec45f9..194afd2 100644
--- a/gkeys/gkeys/cli.py
+++ b/gkeys/gkeys/cli.py
@@ -16,6 +16,7 @@ from __future__ import print_function
 import os
 import sys
 
+from gkeys import __version__
 from gkeys.base import CliBase
 from gkeys.actions import Actions
 from gkeys.action_map import Available_Actions, Action_Map
@@ -44,6 +45,7 @@ class Main(CliBase):
 'description': 'Gentoo-keys manager program',
 'epilog': '''CAUTION: adding UNTRUSTED keys can be HAZARDOUS to 
your system!'''
 }
+self.version = __version__
 
 
 def __call__(self, args=None):

diff --git a/py2man/command.template b/py2man/command.template
index 975a4bf..7b44506 100644
--- a/py2man/command.template
+++ b/py2man/command.template
@@ -4,7 +4,7 @@
 
 .SH SYNOPSIS
 .B %(prog)s
-[\fB\-h\fR] [\fB\-c\fR \fICONFIG\fR] [\fB\-D\fR 
\fI{WARNING,INFO,FATAL,NOTSET,WARN,DEBUG,ERROR,CRITICAL}\fR] [\fBSUBCOMMAND] 
[\fBSUBCOMMAND-OPTION] ...
+[\fB\-h\fR] [\fB\-c\fR \fICONFIG\fR] [\fB\-D\fR 
\fI{WARNING,INFO,FATAL,NOTSET,WARN,DEBUG,ERROR,CRITICAL}\fR] 
[\fB\-V\fR][\fBSUBCOMMAND] [\fBSUBCOMMAND-OPTION] ...
 
 .SH DESCRIPTION
 .PP

diff --git a/py2man/options.py b/py2man/options.py
index 87d19bf..61a6230 100644
--- a/py2man/options.py
+++ b/py2man/options.py
@@ -64,6 +64,8 @@ The spec file to use from the gkeys-gen.conf file.''',
 Turn on timestamp use.''',
 'uid': '''.IP "-u \\fIUID\\fR, --uid \\fIUID"
 The user id(s) (and email) of the key(s) being added (optional)''',
+'version': '''.IP "-V, --version"
+The program version''',
 })
 
 SHORT_OPTS = OrderedDict({

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/doc/

2015-01-07 Thread Brian Dolbec

commit: c7ec30f6c7faaf1f4e5712f82987217e312475a6
Author: Brian Dolbec  gentoo  org>
AuthorDate: Thu Jan  8 03:46:30 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Thu Jan  8 03:46:30 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=c7ec30f6

gkeys/doc/gkeys.1:  Remove man page in favor of the generated one

This man page was used as the base to create the templates and subsequent 
generation code.

---
 gkeys/doc/gkeys.1 | 97 ---
 1 file changed, 97 deletions(-)

diff --git a/gkeys/doc/gkeys.1 b/gkeys/doc/gkeys.1
deleted file mode 100644
index 322a0ab..000
--- a/gkeys/doc/gkeys.1
+++ /dev/null
@@ -1,97 +0,0 @@
-.TH "gkeys" "1" "0.1" "GKEYS" ""
-.SH NAME
-gkeys \- Gentoo OpenPGP key management tool
-.SH SYNOPSIS
-.B gkeys
-[\fB\-h\fR] [\fB\-c\fR \fICONFIG\fR] [\fB\-D\fR 
\fI{WARNING,INFO,FATAL,NOTSET,WARN,DEBUG,ERROR,CRITICAL}\fR] [\fBSUBCOMMAND] 
[\fBSUBCOMMAND-OPTION] ...
-.SH DESCRIPTION
-.PP
-Gentoo Keys is a Python based project that aims to manage 
-the GPG keys used for validation on users and Gentoo's infrastracutre servers. 
-Gentoo Keys is able to verify GPG keys used for Gentoo's release media, 
-such as installation CD's, Live DVD's, packages and other GPG signed documents.
-
-.SH OPTIONAL ARGUMENTS
-.IP "-h, --help"
-show this help message and exit
-.IP "-c \fICONFIG\fR, --config \fICONFIG"
-The path to an alternate config file
-.IP "-D, --debug \fI{WARNING,INFO,FATAL,NOTSET,WARN,DEBUG,ERROR,CRITICAL}\fR"
-The logging level to set for the logfile
-
-.SH SUBCOMMANDS
-.SH GENERAL
-.IP sign
-Sign a file
-.IP verify
-File verification action
-.SH KEYS
-.IP check-key
-Check keys actions
-.IP import-key
-Add a specified key to a specified keyring
-.IP installed
-Lists the installed key directories
-.IP install-key
-Install a key from the seed(s)
-.IP search-key
-Search for a key's seed field in the installed keys db
-.IP list-key
-Pretty-print the selected seed file or nick
-.IP move-key
-Rename an installed key
-.IP refresh-key
-Calls gpg with the --refresh-keys option
-.IP remove-key
-Remove an installed key
-.IP spec-check
-Check keys actions
-.SH SEEDS
-.IP add-seed
-Add or replace a key in the selected seed file(s)
-.IP fetch-seed
-Download the selected seed file(s)
-.IP list-cats
-List seed file definitions found in the config
-.IP list-seed
-Pretty-print the selected seed file(s)
-.IP list-seedfiles
-List seed files found in the configured seed directory
-.IP move-seed
-Move keys between seed files
-.IP remove-seed
-Remove a key from the selected seed file(s)
-
-.SH REPORTING BUGS
-Submit bug reports to http://bugs.gentoo.org.
-.br
-Please assign bug to  email alias. 
-
-.SH COPYRIGHTS
-Gentoo Keys is under GPL-2 License.
-
-.SH AUTHORS
-.br
-Brian Dolbec 
-.br
-Pavlos Ratis 
-
-.SH "SEE ALSO"
-.BR gkeys-sign (1),
-.BR gkeys-verify(1),
-.BR gkeys-check-key(1),
-.BR gkeys-import-key(1),
-.BR gkeys-installed(1),
-.BR gkeys-install-key(1),
-.BR gkeys-search-key(1),
-.BR gkeys-list-key(1),
-.BR gkeys-move-key(1),
-.BR gkeys-remove-key(1),
-.BR gkeys-spec-check(1),
-.BR gkeys-add-seed(1),
-.BR gkeys-fetch-seed(1),
-.BR gkeys-list-cats(1),
-.BR gkeys-list-seed(1),
-.BR gkeys-list-seedfiles(1),
-.BR gkeys-move-seed(1),
-.BR gkeys-remove-seed(1)

[gentoo-commits] gentoo-x86 commit in app-emacs/slime: slime-2.12.ebuild ChangeLog

2015-01-07 Thread Mark Wright (gienah)

gienah  15/01/08 04:04:52

  Modified: ChangeLog
  Added:slime-2.12.ebuild
  Log:
  Bump slime to 2.12
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
618E971F)

Revision  ChangesPath
1.75 app-emacs/slime/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/slime/ChangeLog?rev=1.75&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/slime/ChangeLog?rev=1.75&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/slime/ChangeLog?r1=1.74&r2=1.75

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-emacs/slime/ChangeLog,v
retrieving revision 1.74
retrieving revision 1.75
diff -u -r1.74 -r1.75
--- ChangeLog   19 Dec 2014 07:02:16 -  1.74
+++ ChangeLog   8 Jan 2015 04:04:52 -   1.75
@@ -1,6 +1,11 @@
 # ChangeLog for app-emacs/slime
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-emacs/slime/ChangeLog,v 1.74 2014/12/19 
07:02:16 gienah Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-emacs/slime/ChangeLog,v 1.75 2015/01/08 
04:04:52 gienah Exp $
+
+*slime-2.12 (08 Jan 2015)
+
+  08 Jan 2015; Mark Wright  +slime-2.12.ebuild:
+  Bump slime to 2.12
 
 *slime-2.11 (19 Dec 2014)
 



1.1  app-emacs/slime/slime-2.12.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/slime/slime-2.12.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/slime/slime-2.12.ebuild?rev=1.1&content-type=text/plain

Index: slime-2.12.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-emacs/slime/slime-2.12.ebuild,v 1.1 
2015/01/08 04:04:52 gienah Exp $

EAPI=5

[[ ${PV} = ** ]] && GIT_ECLASS="git-r3" || GIT_ECLASS=""

inherit common-lisp-3 ${GIT_ECLASS} elisp eutils

DESCRIPTION="SLIME, the Superior Lisp Interaction Mode (Extended)"
HOMEPAGE="http://common-lisp.net/project/slime/";
if [[ ${PV} != ** ]]; then
SRC_URI="https://github.com/slime/slime/archive/v${PV}.tar.gz -> 
${P}.tar.gz"
fi

LICENSE="GPL-2 xref? ( xref.lisp )"
SLOT="0"
if [[ ${PV} == ** ]]; then
KEYWORDS=""
else
KEYWORDS="~amd64 ~ppc ~sparc ~x86"
fi
IUSE="doc xref"
RESTRICT=test # tests fail to contact sbcl

RDEPEND="virtual/commonlisp
dev-lisp/asdf"
DEPEND="${RDEPEND}
>=sys-apps/texinfo-5.1
doc? ( virtual/texi2dvi )"

CLPACKAGE=swank
CLSYSTEMS=swank
SITEFILE=70${PN}-gentoo.el

src_unpack() {
if [[ ${PV} == ** ]]; then
EGIT_REPO_URI="https://github.com/slime/slime.git";
${GIT_ECLASS}_src_unpack
fi
elisp_src_unpack
}

src_prepare() {
if [[ "${PV}" == "2.11" ]]; then
epatch "${FILESDIR}"/2.11/dont-load-sbcl-pprint.patch
fi
epatch "${FILESDIR}"/2.0_p20130214/gentoo-module-load.patch
epatch "${FILESDIR}"/2.0_p20110617/gentoo-dont-call-init.patch
has_version ">=app-editors/emacs-24" && rm -f lib/cl-lib.el

# extract date of last update from ChangeLog, bug 233270
SLIME_CHANGELOG_DATE=$(awk '/^[-0-9]+ / { print $1; exit; }' ChangeLog)
[ -n "${SLIME_CHANGELOG_DATE}" ] || die "cannot determine ChangeLog 
date"

# SLIME uses the changelog date to make sure that the emacs side and 
the CL side
# are in sync. We hardcode it instead of letting slime determine it at 
runtime
# because ChangeLog doesn't get installed to $EMACSDIR
epatch "${FILESDIR}"/2.11/gentoo-changelog-date.patch

# When starting slime in emacs, slime looks for ${S}/swank/backend.lisp 
as
# /usr/share/common-lisp/source/swank/swank-backend.lisp
pushd swank || die
for i in *.lisp
do
mv ${i} ../swank-${i}
done
popd

sed -i "/(defvar 
\*swank-wire-protocol-version\*/s:nil:\"${SLIME_CHANGELOG_DATE}\":" swank.lisp \
|| die "sed swank.lisp failed"
sed -i "s:@SLIME-CHANGELOG-DATE@:${SLIME_CHANGELOG_DATE}:" slime.el \
|| die "sed slime.el failed"
sed -i "s/@itemx INIT-FUNCTION/@item INIT-FUNCTION/" doc/slime.texi \
|| die "sed doc/slime.texi failed"

# Remove xref.lisp (which is non-free) unless USE flag is set
use xref || rm -f xref.lisp
}

src_compile() {
elisp-compile *.el || die
BYTECOMPFLAGS="${BYTECOMPFLAGS} -L contrib -l slime" \
elisp-compile contrib/*.el lib/*.el || die
emake -j1 -C doc slime.info || die "Cannot build info docs"

if use doc; th

[gentoo-commits] gentoo-x86 commit in dev-lisp/asdf/files: source-registry.conf gentoo-init.lisp

2015-01-07 Thread Mark Wright (gienah)

gienah  15/01/08 03:53:23

  Modified: source-registry.conf gentoo-init.lisp
  Log:
  Thanks to Ruud Koolen (redlizard) for proving Gentoo prefix support for 
asdf-3.1.4 and for testing on ~amd64-linux
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
618E971F)

Revision  ChangesPath
1.2  dev-lisp/asdf/files/source-registry.conf

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/source-registry.conf?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/source-registry.conf?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/source-registry.conf?r1=1.1&r2=1.2

Index: source-registry.conf
===
RCS file: /var/cvsroot/gentoo-x86/dev-lisp/asdf/files/source-registry.conf,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- source-registry.conf20 Apr 2013 14:03:59 -  1.1
+++ source-registry.conf8 Jan 2015 03:53:23 -   1.2
@@ -1,5 +1,5 @@
 ;; -*- Mode: Lisp; -*-
 
 (:source-registry
- (:directory "/usr/share/common-lisp/systems")
+ (:directory "@GENTOO_PORTAGE_EPREFIX@/usr/share/common-lisp/systems")
  :inherit-configuration)



1.2  dev-lisp/asdf/files/gentoo-init.lisp

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/gentoo-init.lisp?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/gentoo-init.lisp?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/files/gentoo-init.lisp?r1=1.1&r2=1.2

Index: gentoo-init.lisp
===
RCS file: /var/cvsroot/gentoo-x86/dev-lisp/asdf/files/gentoo-init.lisp,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- gentoo-init.lisp20 Apr 2013 14:03:59 -  1.1
+++ gentoo-init.lisp8 Jan 2015 03:53:23 -   1.2
@@ -5,7 +5,7 @@
   (*compile-verbose* nil)
   #+cmu (ext:*gc-verbose* nil))
   (handler-bind ((warning #'muffle-warning))
-(load #p"/usr/share/common-lisp/source/asdf/build/asdf.lisp"
+(load 
#p"@GENTOO_PORTAGE_EPREFIX@/usr/share/common-lisp/source/asdf/build/asdf.lisp"
   :print nil :verbose nil)))
 
 #+(or cmu ccl ecl sbcl)

[gentoo-commits] gentoo-x86 commit in dev-lisp/asdf: asdf-3.1.4.ebuild ChangeLog

2015-01-07 Thread Mark Wright (gienah)

gienah  15/01/08 03:53:23

  Modified: asdf-3.1.4.ebuild ChangeLog
  Log:
  Thanks to Ruud Koolen (redlizard) for proving Gentoo prefix support for 
asdf-3.1.4 and for testing on ~amd64-linux
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
618E971F)

Revision  ChangesPath
1.2  dev-lisp/asdf/asdf-3.1.4.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild?r1=1.1&r2=1.2

Index: asdf-3.1.4.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- asdf-3.1.4.ebuild   20 Oct 2014 14:50:25 -  1.1
+++ asdf-3.1.4.ebuild   8 Jan 2015 03:53:23 -   1.2
@@ -1,9 +1,9 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild,v 1.1 
2014/10/20 14:50:25 grozin Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-lisp/asdf/asdf-3.1.4.ebuild,v 1.2 
2015/01/08 03:53:23 gienah Exp $
 
 EAPI=5
-inherit eutils
+inherit eutils prefix
 
 DESCRIPTION="ASDF is Another System Definition Facility for Common Lisp"
 HOMEPAGE="http://common-lisp.net/project/asdf/";
@@ -11,7 +11,7 @@
 
 LICENSE="MIT"
 SLOT="0"
-KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+KEYWORDS="~amd64 ~ppc ~sparc ~x86 ~amd64-linux"
 IUSE="doc"
 
 SLOT="0/${PVR}"
@@ -43,5 +43,8 @@
fi
 
insinto /etc/common-lisp
-   doins "${FILESDIR}"/gentoo-init.lisp "${FILESDIR}"/source-registry.conf
+   cd "${T}"
+   cp "${FILESDIR}"/gentoo-init.lisp "${FILESDIR}"/source-registry.conf .
+   eprefixify gentoo-init.lisp source-registry.conf
+   doins gentoo-init.lisp source-registry.conf
 }



1.19 dev-lisp/asdf/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/ChangeLog?rev=1.19&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/ChangeLog?rev=1.19&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lisp/asdf/ChangeLog?r1=1.18&r2=1.19

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-lisp/asdf/ChangeLog,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- ChangeLog   20 Oct 2014 14:50:25 -  1.18
+++ ChangeLog   8 Jan 2015 03:53:23 -   1.19
@@ -1,6 +1,11 @@
 # ChangeLog for dev-lisp/asdf
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lisp/asdf/ChangeLog,v 1.18 2014/10/20 
14:50:25 grozin Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-lisp/asdf/ChangeLog,v 1.19 2015/01/08 
03:53:23 gienah Exp $
+
+  08 Jan 2015; Mark Wright  asdf-3.1.4.ebuild,
+  files/gentoo-init.lisp, files/source-registry.conf:
+  Thanks to Ruud Koolen (redlizard) for proving Gentoo prefix support for
+  asdf-3.1.4 and for testing on ~amd64-linux
 
 *asdf-3.1.4 (20 Oct 2014)

[gentoo-commits] proj/lisp:master commit in: app-emacs/slime/

2015-01-07 Thread Mark Wright

commit: f6bb9df0d513084cf7f5b09da0db7759e7ffcc35
Author: Mark Wright  gentoo  org>
AuthorDate: Thu Jan  8 03:39:07 2015 +
Commit: Mark Wright  gentoo  org>
CommitDate: Thu Jan  8 03:39:07 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/lisp.git;a=commit;h=f6bb9df0

Bump slime to 2.12

---
 app-emacs/slime/slime-2.12.ebuild | 1 +
 app-emacs/slime/slime-.ebuild | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/app-emacs/slime/slime-2.12.ebuild 
b/app-emacs/slime/slime-2.12.ebuild
new file mode 12
index 000..acf114b
--- /dev/null
+++ b/app-emacs/slime/slime-2.12.ebuild
@@ -0,0 +1 @@
+slime-.ebuild
\ No newline at end of file

diff --git a/app-emacs/slime/slime-.ebuild 
b/app-emacs/slime/slime-.ebuild
index de49121..e31e037 100644
--- a/app-emacs/slime/slime-.ebuild
+++ b/app-emacs/slime/slime-.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $

[gentoo-commits] gentoo-x86 commit in media-libs/libjpeg-turbo: ChangeLog libjpeg-turbo-1.3.1-r1.ebuild

2015-01-07 Thread Remi Cardona (remi)

remi15/01/08 00:15:53

  Modified: ChangeLog libjpeg-turbo-1.3.1-r1.ebuild
  Log:
  media-libs/libjpeg-turbo: fix build with non-bash /bin/sh
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
901AB08A)

Revision  ChangesPath
1.101media-libs/libjpeg-turbo/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog?rev=1.101&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog?rev=1.101&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog?r1=1.100&r2=1.101

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog,v
retrieving revision 1.100
retrieving revision 1.101
diff -u -r1.100 -r1.101
--- ChangeLog   17 Dec 2014 14:47:55 -  1.100
+++ ChangeLog   8 Jan 2015 00:15:53 -   1.101
@@ -1,6 +1,10 @@
 # ChangeLog for media-libs/libjpeg-turbo
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog,v 1.100 
2014/12/17 14:47:55 kensington Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/ChangeLog,v 1.101 
2015/01/08 00:15:53 remi Exp $
+
+  08 Jan 2015; Rémi Cardona  libjpeg-turbo-1.3.1-r1.ebuild:
+  Always run eautoreconf to generate a non-bash compatible configure script
+  (epunt_cxx is no longer needed with recent autoconf), see bug #533902.
 
 *libjpeg-turbo-1.3.1-r1 (17 Dec 2014)
 



1.2  media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild?r1=1.1&r2=1.2

Index: libjpeg-turbo-1.3.1-r1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- libjpeg-turbo-1.3.1-r1.ebuild   17 Dec 2014 14:47:55 -  1.1
+++ libjpeg-turbo-1.3.1-r1.ebuild   8 Jan 2015 00:15:53 -   1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild,v
 1.1 2014/12/17 14:47:55 kensington Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/media-libs/libjpeg-turbo/libjpeg-turbo-1.3.1-r1.ebuild,v
 1.2 2015/01/08 00:15:53 remi Exp $
 
 EAPI=5
 
@@ -40,13 +40,8 @@
epatch "${FILESDIR}"/${PN}-1.3.1-jstdhuff.patch
epatch "${FILESDIR}"/${PN}-1.3.1-overrun.patch
 
-   if [[ -x ./configure ]]; then
-   elibtoolize
-   else
-   eautoreconf
-   fi
-
-   epunt_cxx #424689
+   # generate a new ./configure compatible with non-bash shells, #533902
+   eautoreconf
 
java-pkg-opt-2_src_prepare
 }

[gentoo-commits] gentoo-x86 commit in media-libs/freetype: ChangeLog freetype-2.5.5.ebuild

2015-01-07 Thread Lars Wendler (polynomial-c)

polynomial-c15/01/08 00:15:32

  Modified: ChangeLog
  Added:freetype-2.5.5.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0x981CA6FC)

Revision  ChangesPath
1.412media-libs/freetype/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/freetype/ChangeLog?rev=1.412&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/freetype/ChangeLog?rev=1.412&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/freetype/ChangeLog?r1=1.411&r2=1.412

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/freetype/ChangeLog,v
retrieving revision 1.411
retrieving revision 1.412
diff -u -r1.411 -r1.412
--- ChangeLog   14 Dec 2014 20:35:02 -  1.411
+++ ChangeLog   8 Jan 2015 00:15:32 -   1.412
@@ -1,6 +1,11 @@
 # ChangeLog for media-libs/freetype
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/freetype/ChangeLog,v 1.411 
2014/12/14 20:35:02 floppym Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-libs/freetype/ChangeLog,v 1.412 
2015/01/08 00:15:32 polynomial-c Exp $
+
+*freetype-2.5.5 (08 Jan 2015)
+
+  08 Jan 2015; Lars Wendler  +freetype-2.5.5.ebuild:
+  Version bump.
 
 *freetype-2.5.4-r1 (14 Dec 2014)
 



1.1  media-libs/freetype/freetype-2.5.5.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/freetype/freetype-2.5.5.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/freetype/freetype-2.5.5.ebuild?rev=1.1&content-type=text/plain

Index: freetype-2.5.5.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/media-libs/freetype/freetype-2.5.5.ebuild,v 
1.1 2015/01/08 00:15:32 polynomial-c Exp $

EAPI=5
inherit autotools-multilib flag-o-matic multilib toolchain-funcs

DESCRIPTION="A high-quality and portable font engine"
HOMEPAGE="http://www.freetype.org/";
SRC_URI="mirror://sourceforge/freetype/${P/_/}.tar.bz2
mirror://nongnu/freetype/${P/_/}.tar.bz2
utils?  ( mirror://sourceforge/freetype/ft2demos-${PV}.tar.bz2
mirror://nongnu/freetype/ft2demos-${PV}.tar.bz2 )
doc?( mirror://sourceforge/freetype/${PN}-doc-${PV}.tar.bz2
mirror://nongnu/freetype/${PN}-doc-${PV}.tar.bz2 )
infinality? ( 
http://dev.gentoo.org/~polynomial-c/${P}-infinality-patches.tar.xz )"

LICENSE="|| ( FTL GPL-2+ )"
SLOT="2"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~x64-freebsd 
~x86-freebsd ~x86-interix ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos 
~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris 
~x86-solaris ~x86-winnt"
IUSE="X +adobe-cff auto-hinter bindist bzip2 debug doc fontforge harfbuzz
infinality png static-libs utils"
REQUIRED_USE="harfbuzz? ( auto-hinter )"

CDEPEND=">=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
bzip2? ( >=app-arch/bzip2-1.0.6-r4[${MULTILIB_USEDEP}] )
harfbuzz? ( >=media-libs/harfbuzz-0.9.19[truetype,${MULTILIB_USEDEP}] )
png? ( >=media-libs/libpng-1.2.51[${MULTILIB_USEDEP}] )
utils? (
X? (
>=x11-libs/libX11-1.6.2[${MULTILIB_USEDEP}]
>=x11-libs/libXau-1.0.7-r1[${MULTILIB_USEDEP}]
>=x11-libs/libXdmcp-1.1.1-r1[${MULTILIB_USEDEP}]
)
)"
DEPEND="${CDEPEND}
virtual/pkgconfig"
RDEPEND="${CDEPEND}
abi_x86_32? ( utils? ( 
!app-emulation/emul-linux-x86-xlibs[-abi_x86_32(-)] ) )"
PDEPEND="infinality? ( media-libs/fontconfig-infinality )"

src_prepare() {
enable_option() {
sed -i -e "/#define $1/a #define $1" \
include/config/ftoption.h \
|| die "unable to enable option $1"
}

disable_option() {
sed -i -e "/#define $1/ { s:^:/*:; s:$:*/: }" \
include/config/ftoption.h \
|| die "unable to disable option $1"
}

# This is the same as the 01 patch from infinality
epatch "${FILESDIR}"/${PN}-2.3.2-enable-valid.patch

if use infinality; then
EPATCH_SOURCE="${WORKDIR}/${P}-infinality-patches" 
EPATCH_SUFFIX="patch" \
EPATCH_FORCE="yes" epatch

# FT_CONFIG_OPTION_SUBPIXEL_RENDERING is already enabled in 
freetype-2.4.11
enable_option TT_CONFIG_OPTION_SUBPIXEL_HINTING
f

[gentoo-commits] proj/gentoo-keys:master commit in: /

2015-01-07 Thread Brian Dolbec

commit: 2d0d561b6c301528c3db85de16c6756e23dc5eed
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 23:38:26 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 23:38:26 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=2d0d561b

gentoo-keys: Update .gitignore

---
 .gitignore | 7 +++
 1 file changed, 7 insertions(+)

diff --git a/.gitignore b/.gitignore
index de7e39f..63c37f6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -11,3 +11,10 @@
 /gkeys/doc
 /gkeys-gen/doc
 /gkeys-ldap/doc
+/gkeys/dist
+/gkeys-gen/dist
+/gkeys-ldap/dist
+/gkeys/MANIFEST
+/gkeys-gen/MANIFEST
+/gkeys-ldap/MANIFEST
+

[gentoo-commits] proj/gentoo-keys:master commit in: py2man/

2015-01-07 Thread Brian Dolbec

commit: fa65004a0aa58ae5d6762d7e278b0d130f10b749
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 23:35:38 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 23:35:38 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=fa65004a

py2man/manpages.py: Use ensure_dirs from gkeys fileops

For sdist created tarballs, it was not including an empty doc dir.

---
 py2man/manpages.py | 7 +++
 1 file changed, 7 insertions(+)

diff --git a/py2man/manpages.py b/py2man/manpages.py
index 9e75d2e..f060e50 100644
--- a/py2man/manpages.py
+++ b/py2man/manpages.py
@@ -6,6 +6,8 @@ import codecs
 import os
 from datetime import datetime
 
+from gkeys.fileops import ensure_dirs
+
 from py2man.options import LONG_OPTS, SHORT_OPTS
 
 
@@ -30,6 +32,11 @@ class ManPage(object):
 self.path = docpath
 self.authors = authors
 self.date = datetime.strftime(datetime.today(),'%B %d, %Y')
+self.ensure_docdir()
+
+
+def ensure_docdir(self):
+ensure_dirs(self.path)
 
 
 @staticmethod

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/gkeys/

2015-01-07 Thread Brian Dolbec

commit: d947f8fc4b5d91f1655e1f7770a0f94cbb6a52a9
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 23:33:54 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 23:33:54 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=d947f8fc

gkeys/base.py: Wrap all output with _unicode_decode()

Kristian was still getting py-2.7 errors for some devs due to unicode.

---
 gkeys/gkeys/base.py | 9 +
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/gkeys/gkeys/base.py b/gkeys/gkeys/base.py
index 05946c2..65ad9cc 100644
--- a/gkeys/gkeys/base.py
+++ b/gkeys/gkeys/base.py
@@ -17,6 +17,7 @@ from __future__ import print_function
 import argparse
 import sys
 
+from pyGPG.status import _unicode_decode
 from gkeys import fileops
 from gkeys.log import log_levels, set_logger
 
@@ -311,16 +312,16 @@ class CliBase(object):
 def output_results(results, header=None):
 # super simple output for the time being
 if header:
-print(header)
+print(_unicode_decode(header))
 for msg in results:
 if type(msg) in [str, unicode]:
-print('   ', msg)
+print('   ', _unicode_decode(msg))
 else:
 try:
-print("\n".join([x.pretty_print for x in msg]))
+print("\n".join([_unicode_decode(x.pretty_print) for x in 
msg]))
 except AttributeError:
 for x in msg:
-print('', x)
+print('', _unicode_decode(x))
 print()

[gentoo-commits] gentoo-x86 commit in app-admin/systemrescuecd-x86: systemrescuecd-x86-4.4.1.ebuild ChangeLog

2015-01-07 Thread Michal Gorny (mgorny)

mgorny  15/01/07 22:59:25

  Modified: systemrescuecd-x86-4.4.1.ebuild ChangeLog
  Log:
  Mention amd64 in description.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
EFB4464E!)

Revision  ChangesPath
1.3  
app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?rev=1.3&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?rev=1.3&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?r1=1.2&r2=1.3

Index: systemrescuecd-x86-4.4.1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- systemrescuecd-x86-4.4.1.ebuild 7 Jan 2015 22:53:29 -   1.2
+++ systemrescuecd-x86-4.4.1.ebuild 7 Jan 2015 22:59:25 -   1.3
@@ -1,10 +1,10 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
 1.2 2015/01/07 22:53:29 mgorny Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
 1.3 2015/01/07 22:59:25 mgorny Exp $
 
 EAPI=5
 
-DESCRIPTION="The .iso image of SystemRescueCD rescue disk, x86 variant"
+DESCRIPTION="The .iso image of SystemRescueCD rescue disk, x86 (+ amd64) 
variant"
 HOMEPAGE="http://www.sysresccd.org/";
 SRC_URI="mirror://sourceforge/systemrescuecd/sysresccd-${PN#*-}/${PV}/${P}.iso"
 



1.3  app-admin/systemrescuecd-x86/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?rev=1.3&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?rev=1.3&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?r1=1.2&r2=1.3

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog   7 Jan 2015 22:53:29 -   1.2
+++ ChangeLog   7 Jan 2015 22:59:25 -   1.3
@@ -1,6 +1,9 @@
 # ChangeLog for app-admin/systemrescuecd-x86
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v 
1.2 2015/01/07 22:53:29 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v 
1.3 2015/01/07 22:59:25 mgorny Exp $
+
+  07 Jan 2015; Michał Górny  
systemrescuecd-x86-4.4.1.ebuild:
+  Mention amd64 in description.
 
   07 Jan 2015; Michał Górny  
systemrescuecd-x86-4.4.1.ebuild:
   Fix pkg_postrm() wrt Portage bug #535870.

[gentoo-commits] gentoo-x86 commit in dev-libs/icu/files: icu-remove-bashisms.patch

2015-01-07 Thread Remi Cardona (remi)

remi15/01/07 22:59:22

  Modified: icu-remove-bashisms.patch
  Log:
  dev-libs/icu: fix patch (see bug #528022)
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
901AB08A)

Revision  ChangesPath
1.2  dev-libs/icu/files/icu-remove-bashisms.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/files/icu-remove-bashisms.patch?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/files/icu-remove-bashisms.patch?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/files/icu-remove-bashisms.patch?r1=1.1&r2=1.2

Index: icu-remove-bashisms.patch
===
RCS file: /var/cvsroot/gentoo-x86/dev-libs/icu/files/icu-remove-bashisms.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- icu-remove-bashisms.patch   7 Jan 2015 07:40:43 -   1.1
+++ icu-remove-bashisms.patch   7 Jan 2015 22:59:22 -   1.2
@@ -24,89 +24,89 @@
  
--cflags)
 -  echo $ECHO_N "${CFLAGS} ${ECHO_C}"
-+  printf "%s" "${CFLAGS}"
++  printf "%s" "${CFLAGS} "
;;
  
--cc)
 -  echo $ECHO_N "${CC} ${ECHO_C}"
-+  printf "%s" "${CC}"
++  printf "%s" "${CC} "
;;
  
--cxx)
 -  echo $ECHO_N "${CXX} ${ECHO_C}"
-+  printf "%s" "${CXX}"
++  printf "%s" "${CXX} "
;;
  
--cxxflags)
 -  echo $ECHO_N "${CXXFLAGS} ${ECHO_C}"
-+  printf "%s" "${CXXFLAGS}"
++  printf "%s" "${CXXFLAGS} "
;;
  
--cppflags)
# Don't echo the -I. - it's unneeded.
 -  echo $ECHO_N "${CPPFLAGS} ${ECHO_C}" | sed -e 's/-I. //'
-+  printf "%s" "${CPPFLAGS}" | sed -e 's/-I. //'
++  printf "%s" "${CPPFLAGS} " | sed -e 's/-I. //'
;;
  
--cppflags-searchpath)
 -  echo $ECHO_N "-I${prefix}/include ${ECHO_C}"
-+  printf "%s" "-I${prefix}/include"
++  printf "%s" "-I${prefix}/include "
;;
  
--cppflags-dynamic)
 -  echo $ECHO_N "${SHAREDLIBCPPFLAGS} ${ECHO_C}"
-+  printf "%s" "${SHAREDLIBCPPFLAGS}"
++  printf "%s" "${SHAREDLIBCPPFLAGS} "
;;
  
--cxxflags-dynamic)
 -  echo $ECHO_N "${SHAREDLIBCXXFLAGS} ${ECHO_C}"
-+  printf "%s" "${SHAREDLIBCXXFLAGS}"
++  printf "%s" "${SHAREDLIBCXXFLAGS} "
;;
  
--cflags-dynamic)
 -  echo $ECHO_N "${SHAREDLIBCFLAGS} ${ECHO_C}"
-+  printf "%s" "${SHAREDLIBCFLAGS}"
++  printf "%s" "${SHAREDLIBCFLAGS} "
;;
  
--ldflags-system)
 -  echo $ECHO_N "${LIBS} ${ECHO_C}"
-+  printf "%s" "${LIBS}"
++  printf "%s" "${LIBS} "
;;
  
--ldflags)
 -  echo $ECHO_N "${LDFLAGS} ${ICULIBS} ${ECHO_C}"
-+  printf "%s" "${LDFLAGS} ${ICULIBS}"
++  printf "%s" "${LDFLAGS} ${ICULIBS} "
  # $RPATH_LDFLAGS
;;
  
--ldflags-libsonly)
 -  echo $ECHO_N "${ICULIBS_I18N} ${ICULIBS_COMMON} ${ICULIBS_DATA} 
${ECHO_C}"
-+  printf "%s" "${ICULIBS_I18N} ${ICULIBS_COMMON} ${ICULIBS_DATA}"
++  printf "%s" "${ICULIBS_I18N} ${ICULIBS_COMMON} ${ICULIBS_DATA} "
;;
  
--ldflags-icuio)
 -  echo $ECHO_N " ${ICULIBS_ICUIO} ${ECHO_C}"
-+  printf "%s" " ${ICULIBS_ICUIO}"
++  printf "%s" " ${ICULIBS_ICUIO} "
;;
  
--ldflags-obsolete)
 -  echo $ECHO_N "${ICULIBS_OBSOLETE} ${ECHO_C}"
-+  printf "%s" "${ICULIBS_OBSOLETE}"
++  printf "%s" "${ICULIBS_OBSOLETE} "
;;
  
--ldflags-toolutil)
 -  echo $ECHO_N " ${ICULIBS_TOOLUTIL} ${ECHO_C}"
-+  printf "%s" " ${ICULIBS_TOOLUTIL}"
++  printf "%s" " ${ICULIBS_TOOLUTIL} "
;;
  
--ldflags-layout)
 -  echo $ECHO_N "${ICULIBS_LAYOUT} ${ICULIBS_LAYOUTEX} ${ECHO_C}"
-+  printf "%s" "${ICULIBS_LAYOUT} ${ICULIBS_LAYOUTEX}"
++  printf "%s" "${ICULIBS_LAYOUT} ${ICULIBS_LAYOUTEX} "
;;
  
--ldflags-searchpath)
 -  echo $ECHO_N "-L${libdir} ${ECHO_C}"
-+  printf "%s" "-L${libdir}"
++  printf "%s" "-L${libdir} "
;;
  
--detect-prefix)
@@ -115,47 +115,47 @@
  
--shared-datadir)
 -  echo $ECHO_N "${datadir} ${ECHO_C}"
-+  printf "%s" "${datadir}"
++  printf "%s" "${datadir} "
;;
  
  --incfile)
 -  echo $ECHO_N "${pkglibdir}/Makefile.inc ${ECHO_C}"
-+  printf "%s" "${pkglibdir}/Makefile.inc"
++  printf "%s" "${pkglibdir}/Makefile.inc "
;;
  
--incpkgdatafile)
 -  echo $ECHO_N "${pkglibdir}/pkgdata.inc ${ECHO_C}"
-+  printf "%s" "${pkglibdir}/pkgdata.inc"
++  p

[gentoo-commits] gentoo-x86 commit in dev-libs/icu: ChangeLog

2015-01-07 Thread Remi Cardona (remi)

remi15/01/07 22:59:22

  Modified: ChangeLog
  Log:
  dev-libs/icu: fix patch (see bug #528022)
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
901AB08A)

Revision  ChangesPath
1.290dev-libs/icu/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/ChangeLog?rev=1.290&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/ChangeLog?rev=1.290&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/icu/ChangeLog?r1=1.289&r2=1.290

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-libs/icu/ChangeLog,v
retrieving revision 1.289
retrieving revision 1.290
diff -u -r1.289 -r1.290
--- ChangeLog   7 Jan 2015 07:40:43 -   1.289
+++ ChangeLog   7 Jan 2015 22:59:22 -   1.290
@@ -1,6 +1,9 @@
 # ChangeLog for dev-libs/icu
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-libs/icu/ChangeLog,v 1.289 2015/01/07 
07:40:43 remi Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-libs/icu/ChangeLog,v 1.290 2015/01/07 
22:59:22 remi Exp $
+
+  07 Jan 2015; Rémi Cardona  files/icu-remove-bashisms.patch:
+  Update patch (add wrongly removed spaces), see bug #528022.
 
 *icu-53.1-r1 (07 Jan 2015)

[gentoo-commits] gentoo-x86 commit in www-plugins/chrome-binary-plugins: chrome-binary-plugins-40.0.2214.69_beta1.ebuild ChangeLog chrome-binary-plugins-40.0.2214.45_beta1.ebuild

2015-01-07 Thread Mike Gilbert (floppym)

floppym 15/01/07 22:56:22

  Modified: ChangeLog
  Added:chrome-binary-plugins-40.0.2214.69_beta1.ebuild
  Removed:  chrome-binary-plugins-40.0.2214.45_beta1.ebuild
  Log:
  Automated update.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0BBEEA1FEA4843A4)

Revision  ChangesPath
1.208www-plugins/chrome-binary-plugins/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog?rev=1.208&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog?rev=1.208&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog?r1=1.207&r2=1.208

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog,v
retrieving revision 1.207
retrieving revision 1.208
diff -u -r1.207 -r1.208
--- ChangeLog   7 Jan 2015 00:23:04 -   1.207
+++ ChangeLog   7 Jan 2015 22:56:22 -   1.208
@@ -1,6 +1,13 @@
 # ChangeLog for www-plugins/chrome-binary-plugins
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: 
/var/cvsroot/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog,v 1.207 
2015/01/07 00:23:04 floppym Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/www-plugins/chrome-binary-plugins/ChangeLog,v 1.208 
2015/01/07 22:56:22 floppym Exp $
+
+*chrome-binary-plugins-40.0.2214.69_beta1 (07 Jan 2015)
+
+  07 Jan 2015; Mike Gilbert 
+  +chrome-binary-plugins-40.0.2214.69_beta1.ebuild,
+  -chrome-binary-plugins-40.0.2214.45_beta1.ebuild:
+  Automated update.
 
 *chrome-binary-plugins-41.0.2267.0_alpha1 (07 Jan 2015)
 



1.1  
www-plugins/chrome-binary-plugins/chrome-binary-plugins-40.0.2214.69_beta1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-plugins/chrome-binary-plugins/chrome-binary-plugins-40.0.2214.69_beta1.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-plugins/chrome-binary-plugins/chrome-binary-plugins-40.0.2214.69_beta1.ebuild?rev=1.1&content-type=text/plain

Index: chrome-binary-plugins-40.0.2214.69_beta1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/www-plugins/chrome-binary-plugins/chrome-binary-plugins-40.0.2214.69_beta1.ebuild,v
 1.1 2015/01/07 22:56:22 floppym Exp $

EAPI=5

inherit multilib unpacker

DESCRIPTION="Binary plugins from Google Chrome for use in Chromium"
HOMEPAGE="http://www.google.com/chrome";

case ${PV} in
*_alpha*|*)
SLOT="unstable"
CHROMEDIR="opt/google/chrome-${SLOT}"
MY_PV=${PV/_alpha/-}
;;
*_beta*)
SLOT="beta"
CHROMEDIR="opt/google/chrome-${SLOT}"
MY_PV=${PV/_beta/-}
;;
*_p*)
SLOT="stable"
CHROMEDIR="opt/google/chrome"
MY_PV=${PV/_p/-}
;;
*)
die "Invalid value for \${PV}: ${PV}"
;;
esac

MY_PN="google-chrome-${SLOT}"
MY_P="${MY_PN}_${MY_PV}"

if [[ ${PV} != * ]]; then
SRC_URI="
amd64? (

https://dl.google.com/linux/chrome/deb/pool/main/g/${MY_PN}/${MY_P}_amd64.deb
)
x86? (

https://dl.google.com/linux/chrome/deb/pool/main/g/${MY_PN}/${MY_P}_i386.deb
)
"
KEYWORDS="~amd64 ~x86"
fi

LICENSE="google-chrome"
IUSE="+flash"
RESTRICT="bindist mirror strip"

for x in 0 beta stable unstable; do
if [[ ${SLOT} != ${x} ]]; then
RDEPEND+=" !${CATEGORY}/${PN}:${x}"
fi
done

S="${WORKDIR}/${CHROMEDIR}"
QA_PREBUILT="*"

pkg_nofetch() {
eerror "Please wait 24 hours and sync your portage tree before 
reporting fetch failures."
}

if [[ ${PV} == * ]]; then
src_unpack() {
local base="https://dl.google.com/linux/direct";
local debarch=${ARCH/x86/i386}
wget -O google-chrome.deb 
"${base}/google-chrome-${SLOT}_current_${debarch}.deb" || die
unpack_deb ./google-chrome.deb
}
fi

src_install() {
local version flapper

insinto /usr/$(get_libdir)/chromium-browser/

if use flash; then
doins -r PepperFlash

# Since this is a live ebuild, we're forced to, unfortuantely,
# dynamically construct the command line args for Chromium.
version=$(sed -n 's/.*"version": "\(.*\)",.*/\1/p' 
PepperFlash/manifest.json)

flapper="${ROOT}usr/$(get_libdir)/chromium-browser/PepperFlash/libpepflashplayer.so"
echo -n "CHROMIUM_FLAGS=\"\${CHROMIUM_FLAGS} " > pepper-flash
echo

[gentoo-commits] gentoo-x86 commit in www-client/google-chrome-beta: google-chrome-beta-40.0.2214.69_p1.ebuild ChangeLog google-chrome-beta-40.0.2214.45_p1.ebuild

2015-01-07 Thread Mike Gilbert (floppym)

floppym 15/01/07 22:56:36

  Modified: ChangeLog
  Added:google-chrome-beta-40.0.2214.69_p1.ebuild
  Removed:  google-chrome-beta-40.0.2214.45_p1.ebuild
  Log:
  Automated update.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0BBEEA1FEA4843A4)

Revision  ChangesPath
1.59 www-client/google-chrome-beta/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-client/google-chrome-beta/ChangeLog?rev=1.59&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-client/google-chrome-beta/ChangeLog?rev=1.59&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-client/google-chrome-beta/ChangeLog?r1=1.58&r2=1.59

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/www-client/google-chrome-beta/ChangeLog,v
retrieving revision 1.58
retrieving revision 1.59
diff -u -r1.58 -r1.59
--- ChangeLog   18 Dec 2014 02:55:20 -  1.58
+++ ChangeLog   7 Jan 2015 22:56:36 -   1.59
@@ -1,6 +1,13 @@
 # ChangeLog for www-client/google-chrome-beta
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/www-client/google-chrome-beta/ChangeLog,v 
1.58 2014/12/18 02:55:20 floppym Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/www-client/google-chrome-beta/ChangeLog,v 
1.59 2015/01/07 22:56:36 floppym Exp $
+
+*google-chrome-beta-40.0.2214.69_p1 (07 Jan 2015)
+
+  07 Jan 2015; Mike Gilbert 
+  +google-chrome-beta-40.0.2214.69_p1.ebuild,
+  -google-chrome-beta-40.0.2214.45_p1.ebuild:
+  Automated update.
 
 *google-chrome-beta-40.0.2214.45_p1 (18 Dec 2014)
 



1.1  
www-client/google-chrome-beta/google-chrome-beta-40.0.2214.69_p1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-client/google-chrome-beta/google-chrome-beta-40.0.2214.69_p1.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/www-client/google-chrome-beta/google-chrome-beta-40.0.2214.69_p1.ebuild?rev=1.1&content-type=text/plain

Index: google-chrome-beta-40.0.2214.69_p1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/www-client/google-chrome-beta/google-chrome-beta-40.0.2214.69_p1.ebuild,v
 1.1 2015/01/07 22:56:36 floppym Exp $

EAPI="5"

CHROMIUM_LANGS="am ar bg bn ca cs da de el en_GB es es_LA et fa fi fil fr gu he
hi hr hu id it ja kn ko lt lv ml mr ms nb nl pl pt_BR pt_PT ro ru sk sl 
sr
sv sw ta te th tr uk vi zh_CN zh_TW"

inherit readme.gentoo chromium eutils multilib pax-utils unpacker

DESCRIPTION="The web browser from Google"
HOMEPAGE="http://www.google.com/chrome";

if [[ ${PN} == google-chrome ]]; then
MY_PN=${PN}-stable
else
MY_PN=${PN}
fi

MY_P="${MY_PN}_${PV/_p/-}"

SRC_URI="
amd64? (

http://dl.google.com/linux/chrome/deb/pool/main/g/${MY_PN}/${MY_P}_amd64.deb
)
x86? (

http://dl.google.com/linux/chrome/deb/pool/main/g/${MY_PN}/${MY_P}_i386.deb
)
"

LICENSE="google-chrome"
SLOT="0"
KEYWORDS="-* ~amd64 ~x86"
IUSE="+plugins"
RESTRICT="bindist mirror strip"

RDEPEND="
app-arch/bzip2
app-misc/ca-certificates
dev-libs/expat
dev-libs/glib:2
dev-libs/nspr
dev-libs/nss
gnome-base/gconf:2
media-libs/alsa-lib
media-libs/fontconfig
media-libs/freetype:2
net-print/cups
sys-apps/dbus
sys-libs/libcap
x11-libs/cairo
x11-libs/gdk-pixbuf:2
x11-libs/gtk+:2
>=x11-libs/libX11-1.5.0
x11-libs/libXcomposite
x11-libs/libXcursor
x11-libs/libXdamage
x11-libs/libXext
x11-libs/libXfixes
x11-libs/libXi
x11-libs/libXrandr
x11-libs/libXrender
x11-libs/libXScrnSaver
x11-libs/libXtst
x11-libs/pango
x11-misc/xdg-utils
"

QA_PREBUILT="*"
S=${WORKDIR}
CHROME_HOME="opt/google/chrome${PN#google-chrome}"

DISABLE_AUTOFORMATTING="yes"
DOC_CONTENTS="
Some web pages may require additional fonts to display properly.
Try installing some of the following packages if some characters
are not displayed properly:
- media-fonts/arphicfonts
- media-fonts/bitstream-cyberbit
- media-fonts/droid
- media-fonts/ipamonafont
- media-fonts/ja-ipafonts
- media-fonts/takao-fonts
- media-fonts/wqy-microhei
- media-fonts/wqy-zenhei

Depending on your desktop environment, you may need
to install additional packages to get icons on the Downloads page.

For KDE, the required package is kde-base/oxygen-icons.

For other desktop environments, try one of the following:
- x11-themes/gnome-icon-theme
- x11-themes/tango-icon-t

[gentoo-commits] gentoo-x86 commit in app-admin/systemrescuecd-x86: systemrescuecd-x86-4.4.1.ebuild ChangeLog

2015-01-07 Thread Michal Gorny (mgorny)

mgorny  15/01/07 22:53:29

  Modified: systemrescuecd-x86-4.4.1.ebuild ChangeLog
  Log:
  Fix pkg_postrm() wrt Portage bug #535870.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
EFB4464E!)

Revision  ChangesPath
1.2  
app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild?r1=1.1&r2=1.2

Index: systemrescuecd-x86-4.4.1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- systemrescuecd-x86-4.4.1.ebuild 6 Jan 2015 23:57:06 -   1.1
+++ systemrescuecd-x86-4.4.1.ebuild 7 Jan 2015 22:53:29 -   1.2
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
 1.1 2015/01/06 23:57:06 mgorny Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/systemrescuecd-x86-4.4.1.ebuild,v
 1.2 2015/01/07 22:53:29 mgorny Exp $
 
 EAPI=5
 
@@ -25,23 +25,31 @@
 pkg_postinst() {
local f=${EROOT%/}/usr/share/${PN%-*}/${PN}-newest.iso
 
-   # no newer version? we're the newest!
+   # no version newer than ours? we're the newest!
if ! has_version ">${CATEGORY}/${PF}"; then
ln -f -s -v "${P}.iso" "${f}" || die
fi
 }
 
 pkg_postrm() {
-   # TODO: best_version is probably broken in portage, figure it out
local f=${EROOT%/}/usr/share/${PN%-*}/${PN}-newest.iso
-   local newest_version=$(best_version "${CATEGORY}/${PN}")
 
-   if [[ ${newest_version} != ${CATEGORY}/${PF} ]]; then
-   # we're not the newest? update the symlink.
-   ln -f -s -v "${newest_version%-r*}.iso" "${f}" || die
-   elif [[ ! ${newest_version} ]]; then
-   # last version removed? clean up the symlink.
-   rm -v "${f}" || die
-   # TODO: remove the empty directory
+   # if there is no version newer than ours installed
+   if ! has_version ">${CATEGORY}/${PF}"; then
+   # and we are truly and completely uninstalled...
+   if [[ ! ${REPLACED_BY_VERSION} ]]; then
+   # then find an older version to set the symlink to
+   local newest_version=$(best_version 
"<${CATEGORY}/${PF}")
+
+   if [[ ${newest_version} ]]; then
+   # update the symlink
+   ln -f -s -v "${newest_version%-r*}.iso" "${f}" 
|| die
+   else
+   # last version removed? clean up the symlink
+   rm -v "${f}" || die
+   # and the parent directory
+   rmdir "${f%/*}" || die
+   fi
+   fi
fi
 }



1.2  app-admin/systemrescuecd-x86/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog?r1=1.1&r2=1.2

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- ChangeLog   6 Jan 2015 23:57:06 -   1.1
+++ ChangeLog   7 Jan 2015 22:53:29 -   1.2
@@ -1,6 +1,9 @@
 # ChangeLog for app-admin/systemrescuecd-x86
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v 
1.1 2015/01/06 23:57:06 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-admin/systemrescuecd-x86/ChangeLog,v 
1.2 2015/01/07 22:53:29 mgorny Exp $
+
+  07 Jan 2015; Michał Górny  
systemrescuecd-x86-4.4.1.ebuild:
+  Fix pkg_postrm() wrt Portage bug #535870.
 
 *systemrescuecd-x86-4.4.1 (06 Jan 2015)

[gentoo-commits] proj/sci:master commit in: sci-biology/trans-abyss/

2015-01-07 Thread Martin Mokrejs

commit: 3348aa6294b4e7ef88327026db0f601c646c95b0
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:42:20 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:42:20 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3348aa62

Initial ebuild

---
 sci-biology/trans-abyss/ChangeLog| 10 ++
 sci-biology/trans-abyss/metadata.xml |  9 +
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild | 24 
 3 files changed, 43 insertions(+)

diff --git a/sci-biology/trans-abyss/ChangeLog 
b/sci-biology/trans-abyss/ChangeLog
new file mode 100644
index 000..47ce379
--- /dev/null
+++ b/sci-biology/trans-abyss/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/trans-abyss
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*trans-abyss-1.4.8 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +trans-abyss-1.4.8.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/trans-abyss/metadata.xml 
b/sci-biology/trans-abyss/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/trans-abyss/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild 
b/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild
new file mode 100644
index 000..c8538cb
--- /dev/null
+++ b/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Analyze and combine multiple assemblies from abyss"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss";
+SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/"${PV}"/trans-ABySS-v"${PV}"_20130916.tar.gz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# perl and python
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/trans-ABySS-v"${PV}"
+
+# TODO
+#src_install(){
+#}

[gentoo-commits] proj/sci:master commit in: sci-biology/trowel/

2015-01-07 Thread Martin Mokrejs

commit: 0edf409a12707b0fd7acdd5571db00e4db851928
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:33:33 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:33:33 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0edf409a

new, working ebuild

Package-Manager: portage-2.2.7

---
 sci-biology/trowel/ChangeLog |  9 +
 sci-biology/trowel/metadata.xml  |  9 +
 sci-biology/trowel/trowel-0.1.4.1.ebuild | 20 
 3 files changed, 38 insertions(+)

diff --git a/sci-biology/trowel/ChangeLog b/sci-biology/trowel/ChangeLog
new file mode 100644
index 000..a19c10a
--- /dev/null
+++ b/sci-biology/trowel/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/trowel
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*trowel-0.1.4.1 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs  +metadata.xml,
+  +trowel-0.1.4.1.ebuild:
+  new, working ebuild

diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/trowel/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/trowel/trowel-0.1.4.1.ebuild 
b/sci-biology/trowel/trowel-0.1.4.1.ebuild
new file mode 100644
index 000..c262323
--- /dev/null
+++ b/sci-biology/trowel/trowel-0.1.4.1.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Error corrector for genomic Illumina FASTQ reads using QUALs and 
not coverage info"
+HOMEPAGE="http://sourceforge.net/projects/trowel-ec";
+SRC_URI="http://downloads.sourceforge.net/project/trowel-ec/src/trowel.0.1.4.1.src.tar.gz";
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=">=dev-libs/boost-1.53.0
+   >=dev-cpp/sparsehash-2.0.2"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/trowel.0.1.4.1.src

[gentoo-commits] proj/sci:master commit in: sci-biology/SEECER/

2015-01-07 Thread Martin Mokrejs

commit: 048f49ddebd47dfe85fdffad7ec869913a6ccec7
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:30:38 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:30:38 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=048f49dd

Initial ebuild

---
 sci-biology/SEECER/ChangeLog   | 10 ++
 sci-biology/SEECER/SEECER-0.1.3.ebuild | 33 +
 sci-biology/SEECER/metadata.xml|  9 +
 3 files changed, 52 insertions(+)

diff --git a/sci-biology/SEECER/ChangeLog b/sci-biology/SEECER/ChangeLog
new file mode 100644
index 000..1e865a6
--- /dev/null
+++ b/sci-biology/SEECER/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/SEECER
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*SEECER-0.1.3 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +SEECER-0.1.3.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/SEECER/SEECER-0.1.3.ebuild 
b/sci-biology/SEECER/SEECER-0.1.3.ebuild
new file mode 100644
index 000..7f3833e
--- /dev/null
+++ b/sci-biology/SEECER/SEECER-0.1.3.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Error corrector for RNA-Seq reads"
+HOMEPAGE="http://sb.cs.cmu.edu/seecer/";
+SRC_URI="http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz
+   http://sb.cs.cmu.edu/seecer/downloads/manual.pdf";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-libs/gsl
+   sci-biology/seqan
+   sci-biology/jellyfish"
+RDEPEND="${DEPEND}"
+
+S="${S}"/SEECER
+
+# doh, it install /usr/bin/seecer (note the lowercase letters)
+
+# checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp
+# 
+# Uses:
+# libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 
(0x7f7853faf000)
+
+
+# dobin bin/run_seecer.sh
+# dodoc "${DISTDIR}"/manual.pdf

diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/SEECER/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/BRANCH/

2015-01-07 Thread Martin Mokrejs

commit: f16a3ab142fe2668ba1985cdc09c3c0a6f8840c7
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:29:27 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:29:27 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f16a3ab1

Initial ebuild

---
 sci-biology/BRANCH/BRANCH-.ebuild | 37 +++
 sci-biology/BRANCH/ChangeLog  | 10 ++
 sci-biology/BRANCH/metadata.xml   |  9 +
 3 files changed, 56 insertions(+)

diff --git a/sci-biology/BRANCH/BRANCH-.ebuild 
b/sci-biology/BRANCH/BRANCH-.ebuild
new file mode 100644
index 000..74be1b1
--- /dev/null
+++ b/sci-biology/BRANCH/BRANCH-.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "" ] && inherit git-2
+
+inherit eutils
+
+DESCRIPTION="Extend partial transcripts with sequence from other reads or 
genomic contigs"
+HOMEPAGE=""
+if [ "$PV" == "" ]; then
+   EGIT_REPO_URI="https://github.com/baoe/BRANCH";
+   KEYWORDS=""
+else
+   SRC_URI=""
+   KEYWORDS=""
+fi
+
+
+LICENSE="Artistic-2"
+SLOT="0"
+IUSE=""
+
+DEPEND="sci-biology/blat
+   sci-libs/lemon"
+RDEPEND="${DEPEND}"
+
+src_compile(){
+   cd BRANCH || die
+   g++ -o BRANCH BRANCH.cpp -lemon -lpthread || die
+}
+
+src_install(){
+   dobin BRANCH/BRANCH
+}

diff --git a/sci-biology/BRANCH/ChangeLog b/sci-biology/BRANCH/ChangeLog
new file mode 100644
index 000..8954ba6
--- /dev/null
+++ b/sci-biology/BRANCH/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/BRANCH
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BRANCH- (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +BRANCH-.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/BRANCH/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/bioperl/, sci-biology/ucsc-genome-browser/

2015-01-07 Thread Martin Mokrejs

commit: 06204e7a240e106b481983bdaf48fc4aa9719a4c
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:27:12 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:27:12 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=06204e7a

bioperl/bioperl-1.6.901: dropped an ebuild with USE=+static, otherwise same in 
main tree

---
 sci-biology/bioperl/bioperl-1.6.901.ebuild |  81 
 sci-biology/bioperl/metadata.xml   |   5 +
 sci-biology/ucsc-genome-browser/metadata.xml   |  12 +++
 .../ucsc-genome-browser-260.ebuild | 106 +
 4 files changed, 204 insertions(+)

diff --git a/sci-biology/bioperl/bioperl-1.6.901.ebuild 
b/sci-biology/bioperl/bioperl-1.6.901.ebuild
new file mode 100644
index 000..98d0763
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-1.6.901.ebuild
@@ -0,0 +1,81 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 
1.3 2009/10/02 14:51:51 weaver Exp $
+
+EAPI="2"
+
+inherit perl-module
+
+SUBPROJECTS="+db +network +run"
+MIN_PV="1.6"
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/";
+# SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2";
+SRC_URI="http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-${PV}.tar.gz";
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
+
+CDEPEND=">=perl-core/Module-Build-0.380.0
+   dev-perl/Data-Stag
+   dev-perl/libwww-perl
+   !minimal? (
+   dev-perl/Ace
+   dev-perl/Spreadsheet-ParseExcel
+   dev-perl/Spreadsheet-WriteExcel
+   >=dev-perl/XML-SAX-0.15
+   dev-perl/Graph
+   dev-perl/SOAP-Lite
+   dev-perl/Array-Compare
+   dev-perl/SVG
+   dev-perl/XML-Simple
+   dev-perl/XML-Parser
+   dev-perl/XML-Twig
+   >=dev-perl/HTML-Parser-3.60
+   >=dev-perl/XML-Writer-0.4
+   dev-perl/Clone
+   dev-perl/XML-DOM
+   dev-perl/set-scalar
+   dev-perl/XML-XPath
+   dev-perl/XML-DOM-XPath
+   dev-perl/Algorithm-Munkres
+   dev-perl/Data-Stag
+   dev-perl/Math-Random
+   dev-perl/PostScript
+   dev-perl/Convert-Binary-C
+   dev-perl/SVG-Graph
+   dev-perl/IO-String
+   dev-perl/Class-Inspector
+   dev-perl/Sort-Naturally
+   )
+   graphviz? ( dev-perl/GraphViz )
+   sqlite? ( dev-perl/DBD-SQLite )"
+DEPEND="virtual/perl-Module-Build
+   ${CDEPEND}"
+# In perl-overlay
+#  >=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
+#  >=perl-CPAN/perl-CPAN-1.81
+RDEPEND="${CDEPEND}"
+PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
+   db? ( >=sci-biology/bioperl-db-${MIN_PV} )
+   network? ( >=sci-biology/bioperl-network-${MIN_PV} )
+   run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
+
+S="${WORKDIR}/BioPerl-${PV}"
+
+src_configure() {
+   sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
+   -e "/'CPAN' *=> *1.81/d" \
+   -e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
+
+   if use minimal && use graphviz; then die "USE flags minimal and 
graphviz cannot be used together"; fi
+   perl-module_src_configure
+}
+
+src_install() {
+   mydoc="AUTHORS BUGS FAQ"
+   perl-module_src_install
+}

diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml
new file mode 100644
index 000..d464821
--- /dev/null
+++ b/sci-biology/bioperl/metadata.xml
@@ -0,0 +1,5 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+   sci-biology
+

diff --git a/sci-biology/ucsc-genome-browser/metadata.xml 
b/sci-biology/ucsc-genome-browser/metadata.xml
new file mode 100644
index 000..18137f6
--- /dev/null
+++ b/sci-biology/ucsc-genome-browser/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+   
+   wea...@gentoo.org
+   Andrey Kislyuk
+   
+   sci-biology
+   
+   Install genome browser Web application. If 
this flag is off, only libraries and utilities from the suite are 
installed.
+   
+

diff --git a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild 
b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild
new file mode 100644
index 000..ae00dd8
--- /dev/null
+++ b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild
@@ -0,0 +1,106 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: 
/var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-brows

[gentoo-commits] proj/sci:master commit in: sci-biology/bioperl/

2015-01-07 Thread Martin Mokrejs

commit: 66a3f970a48bb2ea70095bbbeab801efd7c617a1
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:27:56 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:27:56 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=66a3f970

bioperl/bioperl-1.6.901: dropped an ebuild with USE=+static, otherwise same in 
main tree

---
 sci-biology/bioperl/bioperl-1.6.901.ebuild | 81 --
 sci-biology/bioperl/metadata.xml   |  5 --
 2 files changed, 86 deletions(-)

diff --git a/sci-biology/bioperl/bioperl-1.6.901.ebuild 
b/sci-biology/bioperl/bioperl-1.6.901.ebuild
deleted file mode 100644
index 98d0763..000
--- a/sci-biology/bioperl/bioperl-1.6.901.ebuild
+++ /dev/null
@@ -1,81 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 
1.3 2009/10/02 14:51:51 weaver Exp $
-
-EAPI="2"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-MIN_PV="1.6"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/";
-# SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2";
-SRC_URI="http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-${PV}.tar.gz";
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
-
-CDEPEND=">=perl-core/Module-Build-0.380.0
-   dev-perl/Data-Stag
-   dev-perl/libwww-perl
-   !minimal? (
-   dev-perl/Ace
-   dev-perl/Spreadsheet-ParseExcel
-   dev-perl/Spreadsheet-WriteExcel
-   >=dev-perl/XML-SAX-0.15
-   dev-perl/Graph
-   dev-perl/SOAP-Lite
-   dev-perl/Array-Compare
-   dev-perl/SVG
-   dev-perl/XML-Simple
-   dev-perl/XML-Parser
-   dev-perl/XML-Twig
-   >=dev-perl/HTML-Parser-3.60
-   >=dev-perl/XML-Writer-0.4
-   dev-perl/Clone
-   dev-perl/XML-DOM
-   dev-perl/set-scalar
-   dev-perl/XML-XPath
-   dev-perl/XML-DOM-XPath
-   dev-perl/Algorithm-Munkres
-   dev-perl/Data-Stag
-   dev-perl/Math-Random
-   dev-perl/PostScript
-   dev-perl/Convert-Binary-C
-   dev-perl/SVG-Graph
-   dev-perl/IO-String
-   dev-perl/Class-Inspector
-   dev-perl/Sort-Naturally
-   )
-   graphviz? ( dev-perl/GraphViz )
-   sqlite? ( dev-perl/DBD-SQLite )"
-DEPEND="virtual/perl-Module-Build
-   ${CDEPEND}"
-# In perl-overlay
-#  >=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
-#  >=perl-CPAN/perl-CPAN-1.81
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
-   db? ( >=sci-biology/bioperl-db-${MIN_PV} )
-   network? ( >=sci-biology/bioperl-network-${MIN_PV} )
-   run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
-   sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-   -e "/'CPAN' *=> *1.81/d" \
-   -e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
-
-   if use minimal && use graphviz; then die "USE flags minimal and 
graphviz cannot be used together"; fi
-   perl-module_src_configure
-}
-
-src_install() {
-   mydoc="AUTHORS BUGS FAQ"
-   perl-module_src_install
-}

diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml
deleted file mode 100644
index d464821..000
--- a/sci-biology/bioperl/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   sci-biology
-

[gentoo-commits] proj/sci:master commit in: sci-biology/Atlas_GapFill/

2015-01-07 Thread Martin Mokrejs

commit: 86160d6d6d042a10bd3b1a8b432eaf6db560b6d3
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:24:19 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:24:19 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=86160d6d

Initial ebuild

---
 sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild | 23 ++
 sci-biology/Atlas_GapFill/ChangeLog| 10 ++
 sci-biology/Atlas_GapFill/metadata.xml |  9 +
 3 files changed, 42 insertions(+)

diff --git a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild 
b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
new file mode 100644
index 000..c658019
--- /dev/null
+++ b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Close gaps using BWA-identified reads and reassemble using Phrap, 
Newbler, Velvet, compare by cross_match"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-gapfill";
+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2
+   
https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/README 
-> ATLAS_GapFill_V2_2.README"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# is there an ebuild for newbler so we could add it to DEPEND?
+DEPEND="dev-lang/perl
+   sys-cluster/torque || ( sys-cluster/openpbs )
+   sci-biology/phrap
+   sci-biology/bwa
+   sci-biology/velvet"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/Atlas_GapFill/ChangeLog 
b/sci-biology/Atlas_GapFill/ChangeLog
new file mode 100644
index 000..74cc2d8
--- /dev/null
+++ b/sci-biology/Atlas_GapFill/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/Atlas_GapFill
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*Atlas_GapFill-2.2 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +Atlas_GapFill-2.2.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/Atlas_GapFill/metadata.xml 
b/sci-biology/Atlas_GapFill/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/Atlas_GapFill/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/tigr-closure/

2015-01-07 Thread Martin Mokrejs

commit: f7194dde6bb1e013487400d22fa0a663ca909338
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:13:13 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:13:13 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7194dde

Initial ebuild

---
 sci-biology/tigr-closure/ChangeLog | 10 
 sci-biology/tigr-closure/metadata.xml  |  9 +++
 .../tigr-closure/tigr-closure-20080106.ebuild  | 68 ++
 3 files changed, 87 insertions(+)

diff --git a/sci-biology/tigr-closure/ChangeLog 
b/sci-biology/tigr-closure/ChangeLog
new file mode 100644
index 000..eba3b60
--- /dev/null
+++ b/sci-biology/tigr-closure/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/tigr-closure
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*tigr-closure-20080106 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +tigr-closure-20080106.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/tigr-closure/metadata.xml 
b/sci-biology/tigr-closure/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/tigr-closure/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild 
b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
new file mode 100644
index 000..068dde9
--- /dev/null
+++ b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+DESCRIPTION="TIGR closure tools for the assembly/finishing stage of DNA 
sequencing projects"
+HOMEPAGE="http://tigr-closure.sourceforge.net/";
+# http://tigr-closure.svn.sourceforge.net/tigr-closure/
+SRC_URI="tigr-closure-svn-20080106.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-lang/perl"
+RDEPEND=""
+
+src_compile() {
+   cd TIGR
+   # install the two *.pm files into our perl path?
+   cd ..
+
+   # Closure Work Order Processing (CWP - CLOVER)
+   # clover and oats
+   cd ${WORKDIR}/CWPSystem/trunk/
+   # needs TIGR/EUIDService.pm in PERL paths
+   make dist
+   # how to install the files from install/ ?
+   cd ../..
+   
+   # 
+   cd ScaffoldMgmt/trunk
+   make dist
+   # FIXME: unpack the .tar file into image during src_install()
+   cd ../..
+
+   # awfull
+   cd ClosureQC/trunk/
+   mkdir sandbox
+   ${SANDBOX}=${WORKDIR}/sandbox
+   # have ./src/, ./doc, ./install, ./test/work/drivers, 
./test/work/getqc, ./test/tmp
+   cd test
+   # ...
+   cd ../../..
+
+   # 
+   cd ClosureReactionSystem/trunk
+   make BUILD=true
+   cd ../..
+
+   # some Java servlet?
+   cd AserverConsoleEJB3Hibernate
+   # huh?
+   cd ../..
+}
+
+src_install() {
+   cd ${WORKDIR}/SequenceTiling
+   dobin trunk/src/*.pl
+   cd trunk/src/TIGR/SequenceTiling/
+   myinst="DESTDIR=${D}"
+   perl-module_src_install
+   #
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/jigsaw/

2015-01-07 Thread Martin Mokrejs

commit: c987e4deda07df521aebeafc05a5b0c3cb9b751f
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:06:34 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:06:34 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c987e4de

Initial ebuild

---
 sci-biology/jigsaw/ChangeLog| 10 ++
 sci-biology/jigsaw/jigsaw-3.2.10.ebuild | 17 +
 sci-biology/jigsaw/metadata.xml |  9 +
 3 files changed, 36 insertions(+)

diff --git a/sci-biology/jigsaw/ChangeLog b/sci-biology/jigsaw/ChangeLog
new file mode 100644
index 000..b49b3e1
--- /dev/null
+++ b/sci-biology/jigsaw/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/jigsaw
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*jigsaw-3.2.10 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +jigsaw-3.2.10.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild 
b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild
new file mode 100644
index 000..ba8825d
--- /dev/null
+++ b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Combine results from external gene predictors into final gene 
models"
+HOMEPAGE="http://www.cbcb.umd.edu/software/jigsaw";
+SRC_URI="http://cbcb.umd.edu/software/jigsaw/"${P}".tar.gz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/jigsaw/metadata.xml b/sci-biology/jigsaw/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/jigsaw/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/pvmsx/

2015-01-07 Thread Martin Mokrejs

commit: 3010ecf4051cb4cbab7d5adfceca5bccf1e312df
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:11:27 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:11:27 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3010ecf4

Initial ebuild

---
 sci-biology/pvmsx/metadata.xml |  9 
 sci-biology/pvmsx/pvmsx-0.1.ebuild | 46 ++
 2 files changed, 55 insertions(+)

diff --git a/sci-biology/pvmsx/metadata.xml b/sci-biology/pvmsx/metadata.xml
new file mode 100644
index 000..07b5255
--- /dev/null
+++ b/sci-biology/pvmsx/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+   sci-biology
+   
+   mmokr...@fold.natur.cuni.cz
+   Martin Mokrejs
+   
+

diff --git a/sci-biology/pvmsx/pvmsx-0.1.ebuild 
b/sci-biology/pvmsx/pvmsx-0.1.ebuild
new file mode 100644
index 000..b194f08
--- /dev/null
+++ b/sci-biology/pvmsx/pvmsx-0.1.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="parallel multi-FASTA file processing tool using PVM from TIGR 
Gene Indices project tools, an alternative to psx"
+HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/";
+SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz
+   
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz";
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="sys-cluster/pvm"
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}
+
+src_unpack(){
+   mkdir ${PN} || die
+   cd ${PN} || die "Failed to chdir"
+   unpack ${PN}.tar.gz || die
+}
+
+src_prepare() {
+   # we need gclib from cdbfasta.tar.gz bundle which has fewer files than 
tgi_cpp_library.tar.gz wbut has e.g. GStr.h
+   sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT 
\${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' "${S}"/${PN}/Makefile || die "Failed to 
run sed"
+   sed -i 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' 
"${S}"/"${PN}"/Makefile || die
+   sed -i "s#-I-#-iquote#" ${S}/${PN}/Makefile
+   cd ${PN} || die
+   ln -s ../cdbfasta/gcl . || die "Cannot make a softlink"
+}
+
+src_compile() {
+   cd ${PN} || die
+   emake || die "emake failed in "${S}"/${PN}"
+}
+
+src_install() {
+   cd ${PN} || die
+   dobin ${PN} || die "Failed to install ${PN} binary"
+   newdoc README README.${PN}
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/pb-jelly/

2015-01-07 Thread Martin Mokrejs

commit: 7f8ffd5d9ba726d2502d2e5d0f4046d6333477ac
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:04:41 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:04:41 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7f8ffd5d

Initial ebuild

---
 sci-biology/pb-jelly/ChangeLog  | 10 ++
 sci-biology/pb-jelly/metadata.xml   |  9 +
 sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 22 ++
 3 files changed, 41 insertions(+)

diff --git a/sci-biology/pb-jelly/ChangeLog b/sci-biology/pb-jelly/ChangeLog
new file mode 100644
index 000..7e85562
--- /dev/null
+++ b/sci-biology/pb-jelly/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/pb-jelly
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*pb-jelly-14.9.9 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +pb-jelly-14.9.9.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/pb-jelly/metadata.xml 
b/sci-biology/pb-jelly/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/pb-jelly/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild 
b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
new file mode 100644
index 000..78ddcfe
--- /dev/null
+++ b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Close gaps using PacBio RS or 454 FLX+ reads"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/jelly";
+SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz -> 
pb-jelly-14.9.9.tgz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/blasr
+   <=dev-python/networkx-1.1" # upstream says "Versions past v1.1 have 
been shown to have many issues."
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: sci-biology/blue/

2015-01-07 Thread Martin Mokrejs

commit: 461b242fee3a125f00e7de8fedbf7e20b3392683
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 22:00:08 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 22:00:08 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=461b242f

Initial ebuild, does not install the *.exe.so files. Do we need them?

---
 sci-biology/blue/ChangeLog | 10 ++
 sci-biology/blue/blue-1.1.2.ebuild | 31 +++
 sci-biology/blue/metadata.xml  |  9 +
 3 files changed, 50 insertions(+)

diff --git a/sci-biology/blue/ChangeLog b/sci-biology/blue/ChangeLog
new file mode 100644
index 000..7c74563
--- /dev/null
+++ b/sci-biology/blue/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/blue
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*blue-1.1.2 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs  +blue-1.1.2.ebuild,
+  +metadata.xml:
+  Initial ebuild, does not install the *.exe.so files. Do we need them?
+

diff --git a/sci-biology/blue/blue-1.1.2.ebuild 
b/sci-biology/blue/blue-1.1.2.ebuild
new file mode 100644
index 000..a4555b3
--- /dev/null
+++ b/sci-biology/blue/blue-1.1.2.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix 
insertions and deletions"
+HOMEPAGE="http://www.csiro.au/Outcomes/ICT-and-Services/Software/Blue.aspx";
+SRC_URI="http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Linux112.ashx
 -> "${P}".tar.gz
+   
http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Correcting_reads_with_Blue.ashx
 -> Correcting_reads_with_Blue.pdf"
+
+LICENSE="GPL"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-lang/mono"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/Linux
+
+src_compile(){
+   Blue/compile.sh || die
+   Tessel/compile.sh || die
+   GenerateMerPairs/compile.sh || die
+}
+
+src_install(){
+   dobin Tessel.exe GenerateMerPairs.exe Blue.exe
+   # BUG: probably have to install also the *.exe.so files
+}

diff --git a/sci-biology/blue/metadata.xml b/sci-biology/blue/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/blue/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/

2015-01-07 Thread Martin Mokrejs

commit: 13ba695f8aa01b1e62f9a6c0a9f99ce940d9aadc
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:58:12 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:58:12 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=13ba695f

initial ebuild for a new package

---
 sci-biology/pb-honey/metadata.xml|  9 +
 sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 25 +
 2 files changed, 34 insertions(+)

diff --git a/sci-biology/pb-honey/metadata.xml 
b/sci-biology/pb-honey/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/pb-honey/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild 
b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
new file mode 100644
index 000..c5440bb
--- /dev/null
+++ b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Structural variant identification (SNV) using long reads (over 
10kbp)"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/honey";
+SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/samtools
+   sci-biology/blasr
+   sci-biology/pysam
+   dev-python/h5py
+   dev-python/numpy"
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: sci-biology/Atlas/

2015-01-07 Thread Martin Mokrejs

commit: 8a4f06abb087cbf0c736ab5e9bb53c252e955d1e
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:54:27 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:54:27 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8a4f06ab

initial ebuild for a new package

---
 sci-biology/Atlas/Atlas-2005.ebuild | 18 ++
 sci-biology/Atlas/ChangeLog | 10 ++
 sci-biology/Atlas/metadata.xml  |  9 +
 3 files changed, 37 insertions(+)

diff --git a/sci-biology/Atlas/Atlas-2005.ebuild 
b/sci-biology/Atlas/Atlas-2005.ebuild
new file mode 100644
index 000..29b546d
--- /dev/null
+++ b/sci-biology/Atlas/Atlas-2005.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Atlas Whole Genome Assembly Suite"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite";
+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz";
+# 
https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/Atlas/ChangeLog b/sci-biology/Atlas/ChangeLog
new file mode 100644
index 000..d8bcd83
--- /dev/null
+++ b/sci-biology/Atlas/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/Atlas
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*Atlas-2005 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs  +Atlas-2005.ebuild,
+  +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/Atlas/metadata.xml b/sci-biology/Atlas/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/Atlas/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/CAutils/

2015-01-07 Thread Martin Mokrejs

commit: a33c4998b814ef85373f08d5f92f698a7b5c459e
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:53:04 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:53:04 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a33c4998

initial ebuild for a new package

---
 sci-biology/CAutils/CAutils-20120126.ebuild | 20 
 sci-biology/CAutils/metadata.xml|  9 +
 2 files changed, 29 insertions(+)

diff --git a/sci-biology/CAutils/CAutils-20120126.ebuild 
b/sci-biology/CAutils/CAutils-20120126.ebuild
new file mode 100644
index 000..7b1ca7b
--- /dev/null
+++ b/sci-biology/CAutils/CAutils-20120126.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Additional utilities for Celera assembler (wgs-assembler) from 
UMD"
+HOMEPAGE="http://www.cbcb.umd.edu/research/CeleraAssembler.shtml";
+SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/CAutils.tar.gz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+   dev-lang/perl"
+
+# is partially included in amos-3.1.0

diff --git a/sci-biology/CAutils/metadata.xml b/sci-biology/CAutils/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/CAutils/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/InterMine/

2015-01-07 Thread Martin Mokrejs

commit: 7c39f140af8d039c1c360699e5e621eccfb549c0
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:52:03 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:52:03 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7c39f140

initial ebuild for a new package

---
 sci-biology/InterMine/ChangeLog | 10 ++
 sci-biology/InterMine/InterMine-0.98.ebuild | 24 
 sci-biology/InterMine/metadata.xml  |  9 +
 3 files changed, 43 insertions(+)

diff --git a/sci-biology/InterMine/ChangeLog b/sci-biology/InterMine/ChangeLog
new file mode 100644
index 000..1c16358
--- /dev/null
+++ b/sci-biology/InterMine/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/InterMine
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*InterMine-0.98 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +InterMine-0.98.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/InterMine/InterMine-0.98.ebuild 
b/sci-biology/InterMine/InterMine-0.98.ebuild
new file mode 100644
index 000..f5826c8
--- /dev/null
+++ b/sci-biology/InterMine/InterMine-0.98.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "" ] && inherit git-2
+
+DESCRIPTION="Biological data warehouse integrating complex data"
+HOMEPAGE=""
+if [ "$PV" == "" ]; then
+   EGIT_REPO_URI="https://github.com/intermine/intermine";
+   KEYWORDS=""
+else
+   SRC_URI=""
+   KEYWORDS=""
+fi
+
+LICENSE="LGPL-v3"
+SLOT="0"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/InterMine/metadata.xml 
b/sci-biology/InterMine/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/InterMine/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/MochiView/

2015-01-07 Thread Martin Mokrejs

commit: bbc4afe55941d71c81c170b43cba7ffc467f4508
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:50:01 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:50:01 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bbc4afe5

initial ebuild for a new package

---
 sci-biology/MochiView/ChangeLog | 10 ++
 sci-biology/MochiView/MochiView-1.45.ebuild | 17 +
 sci-biology/MochiView/metadata.xml  |  9 +
 3 files changed, 36 insertions(+)

diff --git a/sci-biology/MochiView/ChangeLog b/sci-biology/MochiView/ChangeLog
new file mode 100644
index 000..55ef996
--- /dev/null
+++ b/sci-biology/MochiView/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/MochiView
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*MochiView-1.45 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +MochiView-1.45.ebuild, +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/MochiView/MochiView-1.45.ebuild 
b/sci-biology/MochiView/MochiView-1.45.ebuild
new file mode 100644
index 000..c1a8145
--- /dev/null
+++ b/sci-biology/MochiView/MochiView-1.45.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Genome browser and analysis"
+HOMEPAGE="http://johnsonlab.ucsf.edu/mochi.html";
+SRC_URI=""
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/MochiView/metadata.xml 
b/sci-biology/MochiView/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/MochiView/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/ampliconnoise/

2015-01-07 Thread Martin Mokrejs

commit: 6be36f56d69cd44520a4fb49808511f65e3b
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:48:51 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:48:51 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6be36f56

initial ebuild for a new package

Package-Manager: portage-2.2.7

---
 sci-biology/ampliconnoise/ChangeLog | 10 ++
 sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild | 20 
 sci-biology/ampliconnoise/metadata.xml  |  9 +
 3 files changed, 39 insertions(+)

diff --git a/sci-biology/ampliconnoise/ChangeLog 
b/sci-biology/ampliconnoise/ChangeLog
new file mode 100644
index 000..eb6ffaa
--- /dev/null
+++ b/sci-biology/ampliconnoise/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/ampliconnoise
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ampliconnoise-1.27 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +ampliconnoise-1.27.ebuild:
+  initial ebuild
+

diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild 
b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild
new file mode 100644
index 000..a53392b
--- /dev/null
+++ b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Noise removal from pyrosequenced amplicons"
+HOMEPAGE="http://code.google.com/p/ampliconnoise/";
+SRC_URI="http://ampliconnoise.googlecode.com/files/AmpliconNoiseV"${PV}".tar.gz
+   http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz
+   http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz";
+
+LICENSE="LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+

diff --git a/sci-biology/ampliconnoise/metadata.xml 
b/sci-biology/ampliconnoise/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/ampliconnoise/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/, sci-biology/ePCR/files/

2015-01-07 Thread Martin Mokrejs

commit: 495d85d8aa9c330e890dfd0102af62b2c3cbf3bf
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:45:36 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:45:36 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d85d8

dropped KEYWORDS for incomplete ebuild

---
 sci-biology/ePCR/ePCR-2.3.12.ebuild| 34 ++
 sci-biology/ePCR/files/config.mk.patch | 18 ++
 sci-biology/ePCR/metadata.xml  |  9 +
 3 files changed, 61 insertions(+)

diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild 
b/sci-biology/ePCR/ePCR-2.3.12.ebuild
new file mode 100644
index 000..bb82fa3
--- /dev/null
+++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit eutils
+
+DESCRIPTION="Search for sub-sequences matching PCR primers with correct order, 
orientation, and spacing"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/e-pcr/";
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}"/e-PCR-"${PV}
+
+src_prepare(){
+   epatch ${FILESDIR}"/config.mk.patch"
+}
+
+src_compile(){
+   make -j1 srcdir=${S} objdir=${S} || die "make -j1 failed"
+}
+
+src_install(){
+   dobin e-PCR famap fahash re-PCR
+   dodoc README.TXT
+}

diff --git a/sci-biology/ePCR/files/config.mk.patch 
b/sci-biology/ePCR/files/config.mk.patch
new file mode 100644
index 000..1960b43
--- /dev/null
+++ b/sci-biology/ePCR/files/config.mk.patch
@@ -0,0 +1,18 @@
+--- stand/config.mk.ori2012-01-16 17:38:11.0 +0100
 stand/config.mk2012-01-16 17:39:12.0 +0100
+@@ -52,11 +52,11 @@
+ 
+ #
+ # GNU compiler flags
+-CC = gcc
+-CXX = g++
+-CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \
++#CC = gcc
++#CXX = g++
++CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \
+   -DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1
+-LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS) 
++LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) 
+ # $(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS)
+ 
+ LF64CCFLAGS = `getconf LFS_CFLAGS` 

diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/ePCR/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/barrnap/

2015-01-07 Thread Martin Mokrejs

commit: 94630596f71351dc8f23722d5fd965fabda645a2
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:46:16 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:46:16 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=94630596

generalized dependency on perl

Package-Manager: portage-2.2.7

---
 sci-biology/barrnap/ChangeLog  | 5 -
 sci-biology/barrnap/barrnap-0.3.ebuild | 5 +++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/barrnap/ChangeLog b/sci-biology/barrnap/ChangeLog
index c90ac20..50bd6cd 100644
--- a/sci-biology/barrnap/ChangeLog
+++ b/sci-biology/barrnap/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-biology/barrnap
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  07 Jan 2015; Martin Mokrejs  barrnap-0.3.ebuild:
+  generalized dependency on perl
+
   26 Jun 2014; Martin Mokrejs  barrnap-0.3.ebuild:
   sci-biology/barrnap: working ebuild although installing a pre-compiled binary
   and until somebody hacks teh main perl code it need to be installed into

diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild 
b/sci-biology/barrnap/barrnap-0.3.ebuild
index 68901a7..43d1a13 100644
--- a/sci-biology/barrnap/barrnap-0.3.ebuild
+++ b/sci-biology/barrnap/barrnap-0.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -16,10 +16,11 @@ KEYWORDS=""
 IUSE=""
 
 # contains bundled binaries of hmmer-3.1 (dev version)
+# needs >=perl-5.6
 
 DEPEND=""
 RDEPEND="${DEPEND}
-   >=dev-lang/perl-5.6
+   dev-lang/perl
sci-biology/nesoni"
 
 src_install(){

[gentoo-commits] proj/sci:master commit in: sci-biology/est2assembly/

2015-01-07 Thread Martin Mokrejs

commit: 1a11e439862e745518e3ac576cfc67dc6f110331
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:43:37 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:43:37 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1a11e439

updated checksum types

---
 sci-biology/est2assembly/est2assembly-1.08.ebuild | 26 +
 sci-biology/est2assembly/est2assembly-.ebuild | 47 +++
 2 files changed, 73 insertions(+)

diff --git a/sci-biology/est2assembly/est2assembly-1.08.ebuild 
b/sci-biology/est2assembly/est2assembly-1.08.ebuild
new file mode 100644
index 000..72fcd5d
--- /dev/null
+++ b/sci-biology/est2assembly/est2assembly-1.08.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display"
+HOMEPAGE="http://code.google.com/p/est2assembly/";
+SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz";
+
+LICENSE="GPL-v3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl
+   app-portage/g-cpan
+   perl-gcpan/Time-Progress
+   sci-biology/fasta
+   sci-biology/ssaha2
+   sci-biology/mira
+   sci-biology/emboss
+   sci-biology/bioperl
+   app-arch/pbzip2"
+RDEPEND="${DEPEND}"
+

diff --git a/sci-biology/est2assembly/est2assembly-.ebuild 
b/sci-biology/est2assembly/est2assembly-.ebuild
new file mode 100644
index 000..11284c5
--- /dev/null
+++ b/sci-biology/est2assembly/est2assembly-.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit eutils distutils-r1
+
+[ "$PV" == "" ] && inherit subversion
+
+DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display"
+HOMEPAGE="http://code.google.com/p/est2assembly/";
+ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk";
+
+if [ "$PV" == "" ]; then
+   ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk";
+   KEYWORDS="~amd64 ~x86"
+else
+   
SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_"${PV}".tar.gz";
+   KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+# still missing
+# annot8r  http://nematodes.org/bioinformatics/annot8r/index.shtml and 
http://nematodes.org/bioinformatics/Annot8r_physprop/
+# prot4EST http://nematodes.org/bioinformatics/prot4EST/
+
+DEPEND="dev-lang/perl
+   dev-perl/Time-Progress
+   sci-biology/fasta
+   sci-biology/ssaha2-bin
+   sci-biology/mira
+   sci-biology/emboss
+   sci-biology/bioperl
+   app-arch/pbzip2"
+RDEPEND="${DEPEND}"
+
+# more install tricks in "${S}"/install.pl
+
+pkg_postinst(){
+   einfo "The package uses mira and newbler assemblers"
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/est2assembly/

2015-01-07 Thread Martin Mokrejs

commit: 5c282c71bd4e760c0b99df0188a5ca339bdf8fc9
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:43:54 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:43:54 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c282c71

updated checksum types

---
 sci-biology/est2assembly/metadata.xml | 9 +
 1 file changed, 9 insertions(+)

diff --git a/sci-biology/est2assembly/metadata.xml 
b/sci-biology/est2assembly/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/est2assembly/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/

2015-01-07 Thread Martin Mokrejs

commit: a02cb28232bd985520b07b000bd19ae6bc8fb025
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:42:09 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:42:09 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a02cb282

added a comment on old version

Package-Manager: portage-2.2.7

---
 sci-biology/jellyfish/ChangeLog  | 6 +-
 sci-biology/jellyfish/jellyfish-2.1.3.ebuild | 4 +++-
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/sci-biology/jellyfish/ChangeLog b/sci-biology/jellyfish/ChangeLog
index a5df6d9..cf2f8f7 100644
--- a/sci-biology/jellyfish/ChangeLog
+++ b/sci-biology/jellyfish/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/jellyfish
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  07 Jan 2015; Martin Mokrejs 
+  jellyfish-2.1.3.ebuild:
+  added a comment on old version
+
 *jellyfish-2.1.3 (02 Jul 2014)
 
   02 Jul 2014; Martin Mokrejs 

diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild 
b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
index 4ac06b2..51f683c 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -9,6 +9,8 @@ HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
 SRC_URI="ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.1.3.tar.gz
ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf";
 
+# older version is hidden in 
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
+
 LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"

[gentoo-commits] proj/sci:master commit in: sci-biology/primerD/

2015-01-07 Thread Martin Mokrejs

commit: 92575f215ce3ea9efcfa46326947ba00e4676742
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:41:02 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:41:02 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=92575f21

ebuild skeleton

---
 sci-biology/primerD/ChangeLog| 10 ++
 sci-biology/primerD/metadata.xml |  9 +
 sci-biology/primerD/primerD-1.0.0.ebuild | 17 +
 3 files changed, 36 insertions(+)

diff --git a/sci-biology/primerD/ChangeLog b/sci-biology/primerD/ChangeLog
new file mode 100644
index 000..f75108a
--- /dev/null
+++ b/sci-biology/primerD/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/primerD
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*primerD-1.0.0 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs 
+  +primerD-1.0.0.ebuild, +metadata.xml:
+  ebuild skeleton
+

diff --git a/sci-biology/primerD/metadata.xml b/sci-biology/primerD/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/primerD/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild 
b/sci-biology/primerD/primerD-1.0.0.ebuild
new file mode 100644
index 000..21163db
--- /dev/null
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Design degenerate primers"
+HOMEPAGE="http://mblab.wustl.edu/software.html";
+SRC_URI="http://mblab.wustl.edu/software/download/primerD.tar.gz -> 
primerD-1.0.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/

2015-01-07 Thread Martin Mokrejs

commit: 2ac683eaf770db8ff97cc6f8c7aa8d2fd5bb7e74
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:39:09 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:39:09 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2ac683ea

added perl to dependencies

Package-Manager: portage-2.2.7

---
 sci-biology/velvetk/ChangeLog   | 6 +-
 sci-biology/velvetk/velvetk-20120606.ebuild | 4 ++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
index add4df7..20f03c2 100644
--- a/sci-biology/velvetk/ChangeLog
+++ b/sci-biology/velvetk/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/velvetk
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  07 Jan 2015; Martin Mokrejs 
+  velvetk-20120606.ebuild:
+  added perl to dependencies
+
 *velvetk-20120606 (15 Apr 2014)
 
   15 Apr 2014; Martin Mokrejs  +metadata.xml,

diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild 
b/sci-biology/velvetk/velvetk-20120606.ebuild
index 2ebb4f3..b6bfc94 100644
--- a/sci-biology/velvetk/velvetk-20120606.ebuild
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -15,7 +15,7 @@ SLOT="0"
 KEYWORDS="~amd64"
 IUSE=""
 
-DEPEND=""
+DEPEND="dev-lang/perl"
 RDEPEND="${DEPEND}"
 
 S="${WORKDIR}"

[gentoo-commits] proj/sci:master commit in: licenses/

2015-01-07 Thread Martin Mokrejs

commit: 51914e3305d2364a930d6baa6ef7ce2663621c19
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 21:35:20 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 21:35:20 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=51914e33

update Tablet license

---
 licenses/Tablet | 38 ++
 1 file changed, 6 insertions(+), 32 deletions(-)

diff --git a/licenses/Tablet b/licenses/Tablet
index d81931a..296b09c 100644
--- a/licenses/Tablet
+++ b/licenses/Tablet
@@ -1,36 +1,10 @@
-   Tablet uses a modified version of the [1]BSD License which has been
-   edited to remove references to distribution and use in source forms.
-   This means that we are happy for you to distribute and use Tablet
-   however you please, but we do not (yet) want to make the source code
-   publicly available.
+Copyright (c) 2009-2014, Information & Computational Sciences, The James 
Hutton Institute.
+All rights reserved.
 
-   The licence and copyright for Tablet is as follows:
+Redistribution and use in source and binary forms, with or without 
modification, are permitted provided that the following conditions are met:
 
-   Copyright © 2009-2013, Information & Computational Sciences, JHI.
-   All rights reserved.
+1. Redistributions of source code must retain the above copyright notice, this 
list of conditions and the following disclaimer.
 
-   Redistribution and use in binary form, without modification, is
-   permitted provided that the following conditions are met:
+2. Redistributions in binary form must reproduce the above copyright notice, 
this list of conditions and the following disclaimer in the documentation 
and/or other materials provided with the distribution.
 
-   - Redistributions must reproduce the above copyright notice, this list
-   of conditions and the following disclaimer in the documentation and/or
-   other materials provided with the distribution.
-   - Neither the name of The James Hutton Institute nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-   THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
-   IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
-   TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
-   PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
-   OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-   SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
-   LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
-   DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
-   THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-   (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-   OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-References
-
-   1. http://opensource.org/licenses/bsd-license.html
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” 
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE 
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR 
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, 
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE 
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

[gentoo-commits] proj/sci:master commit in: sci-biology/primerD/, sci-biology/InterMine/, sci-biology/ucsc-genome-browser/, ...

2015-01-07 Thread Martin Mokrejs

commit: 2c54fbea31de3d8b20ca965d780805fdf20dd018
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 20:42:52 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 20:42:52 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2c54fbea

Revert "sci-biology/blue: Initial ebuild, does not install the *.exe.so files. 
Do we need them?"

This reverts commit b79af8f82794f511181ab43aa0c20871a4d39723.

---
 sci-biology/Atlas/Atlas-2005.ebuild|  18 
 sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild |  22 -
 sci-biology/CAutils/CAutils-20120126.ebuild|  20 
 sci-biology/InterMine/InterMine-0.98.ebuild|   3 -
 sci-biology/MochiView/MochiView-1.45.ebuild|  18 
 .../ampliconnoise/ampliconnoise-1.27.ebuild|  20 
 sci-biology/bioperl/bioperl-1.6.901.ebuild |  81 
 sci-biology/bioperl/metadata.xml   |   5 -
 sci-biology/blue/ChangeLog |  10 --
 sci-biology/blue/blue-1.1.2.ebuild |  31 --
 sci-biology/blue/metadata.xml  |   9 --
 sci-biology/ePCR/ePCR-2.3.12.ebuild|  34 ---
 sci-biology/ePCR/files/config.mk.patch |  18 
 sci-biology/est2assembly/est2assembly-1.08.ebuild  |  26 -
 sci-biology/jigsaw/jigsaw-3.2.10.ebuild|   2 -
 sci-biology/pb-honey/pb-honey-14.1.15.ebuild   |  25 -
 sci-biology/pb-jelly/pb-jelly-14.1.14.ebuild   |  22 -
 sci-biology/primerD/primerD-1.0.0.ebuild   |   3 -
 sci-biology/pvmsx/metadata.xml |   9 --
 sci-biology/pvmsx/pvmsx-0.1.ebuild |  46 -
 .../tigr-closure/tigr-closure-20080106.ebuild  |  66 -
 sci-biology/ucsc-genome-browser/metadata.xml   |  12 ---
 .../ucsc-genome-browser-260.ebuild | 106 -
 23 files changed, 606 deletions(-)

diff --git a/sci-biology/Atlas/Atlas-2005.ebuild 
b/sci-biology/Atlas/Atlas-2005.ebuild
deleted file mode 100644
index 8400820..000
--- a/sci-biology/Atlas/Atlas-2005.ebuild
+++ /dev/null
@@ -1,18 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-DESCRIPTION="Atlas Whole Genome Assembly Suite"
-HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite";
-SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz";
-# 
https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz
-
-LICENSE=""
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"

diff --git a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild 
b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
deleted file mode 100644
index b918714..000
--- a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-DESCRIPTION="Close gaps using BWA-identified reads and reassemble using Phrap, 
Newbler, Velvet, compare by cross_match"
-HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-gapfill";
-SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2";
-
-LICENSE=""
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# is there an ebuild for newbler?
-DEPEND="dev-lang/perl
-   (sys-cluster/torque || sys/cluster/openpbs)
-   sci-biology/phrap
-   sci-biology/bwa
-   sci-biology/velvet"
-RDEPEND="${DEPEND}"

diff --git a/sci-biology/CAutils/CAutils-20120126.ebuild 
b/sci-biology/CAutils/CAutils-20120126.ebuild
deleted file mode 100644
index 7b1ca7b..000
--- a/sci-biology/CAutils/CAutils-20120126.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-DESCRIPTION="Additional utilities for Celera assembler (wgs-assembler) from 
UMD"
-HOMEPAGE="http://www.cbcb.umd.edu/research/CeleraAssembler.shtml";
-SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/CAutils.tar.gz";
-
-LICENSE=""
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
-   dev-lang/perl"
-
-# is partially included in amos-3.1.0

diff --git a/sci-biology/InterMine/InterMine-0.98.ebuild 
b/sci-biology/InterMine/InterMine-0.98.ebuild
deleted file mode 100644
index a06fba7..000
--- a/sci-biology/InterMine/InterMine-0.98.ebuild
+++ /dev/null
@@ -1,3 +0,0 @@
-http://intermine.org/
-svn co svn://subversion.flymine.org/branches/intermine_0_98
-LGPL-3

diff --git a/sci-biology/MochiView/MochiView-1.45.ebuild 
b/sci-biology/MochiView/MochiView-1.45.ebuild
deleted file mode 100644
index 5e9344a..000
--- a/sci-biology/MochiView/MochiView-1.45.ebuild
+++ /dev/null
@@ -1,18 +0,0 @@
-# Copyri

[gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/, sci-biology/bioperl/, sci-biology/jigsaw/, ...

2015-01-07 Thread Martin Mokrejs

commit: b79af8f82794f511181ab43aa0c20871a4d39723
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 20:42:05 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 20:42:05 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b79af8f8

sci-biology/blue: Initial ebuild, does not install the *.exe.so files. Do we 
need them?

---
 sci-biology/Atlas/Atlas-2005.ebuild|  18 
 sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild |  22 +
 sci-biology/CAutils/CAutils-20120126.ebuild|  20 
 sci-biology/InterMine/InterMine-0.98.ebuild|   3 +
 sci-biology/MochiView/MochiView-1.45.ebuild|  18 
 .../ampliconnoise/ampliconnoise-1.27.ebuild|  20 
 sci-biology/bioperl/bioperl-1.6.901.ebuild |  81 
 sci-biology/bioperl/metadata.xml   |   5 +
 sci-biology/blue/ChangeLog |  10 ++
 sci-biology/blue/blue-1.1.2.ebuild |  31 ++
 sci-biology/blue/metadata.xml  |   9 ++
 sci-biology/ePCR/ePCR-2.3.12.ebuild|  34 +++
 sci-biology/ePCR/files/config.mk.patch |  18 
 sci-biology/est2assembly/est2assembly-1.08.ebuild  |  26 +
 sci-biology/jigsaw/jigsaw-3.2.10.ebuild|   2 +
 sci-biology/pb-honey/pb-honey-14.1.15.ebuild   |  25 +
 sci-biology/pb-jelly/pb-jelly-14.1.14.ebuild   |  22 +
 sci-biology/primerD/primerD-1.0.0.ebuild   |   3 +
 sci-biology/pvmsx/metadata.xml |   9 ++
 sci-biology/pvmsx/pvmsx-0.1.ebuild |  46 +
 .../tigr-closure/tigr-closure-20080106.ebuild  |  66 +
 sci-biology/ucsc-genome-browser/metadata.xml   |  12 +++
 .../ucsc-genome-browser-260.ebuild | 106 +
 23 files changed, 606 insertions(+)

diff --git a/sci-biology/Atlas/Atlas-2005.ebuild 
b/sci-biology/Atlas/Atlas-2005.ebuild
new file mode 100644
index 000..8400820
--- /dev/null
+++ b/sci-biology/Atlas/Atlas-2005.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Atlas Whole Genome Assembly Suite"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite";
+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz";
+# 
https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz
+
+LICENSE=""
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild 
b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
new file mode 100644
index 000..b918714
--- /dev/null
+++ b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Close gaps using BWA-identified reads and reassemble using Phrap, 
Newbler, Velvet, compare by cross_match"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-gapfill";
+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+# is there an ebuild for newbler?
+DEPEND="dev-lang/perl
+   (sys-cluster/torque || sys/cluster/openpbs)
+   sci-biology/phrap
+   sci-biology/bwa
+   sci-biology/velvet"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/CAutils/CAutils-20120126.ebuild 
b/sci-biology/CAutils/CAutils-20120126.ebuild
new file mode 100644
index 000..7b1ca7b
--- /dev/null
+++ b/sci-biology/CAutils/CAutils-20120126.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Additional utilities for Celera assembler (wgs-assembler) from 
UMD"
+HOMEPAGE="http://www.cbcb.umd.edu/research/CeleraAssembler.shtml";
+SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/CAutils.tar.gz";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+   dev-lang/perl"
+
+# is partially included in amos-3.1.0

diff --git a/sci-biology/InterMine/InterMine-0.98.ebuild 
b/sci-biology/InterMine/InterMine-0.98.ebuild
new file mode 100644
index 000..a06fba7
--- /dev/null
+++ b/sci-biology/InterMine/InterMine-0.98.ebuild
@@ -0,0 +1,3 @@
+http://intermine.org/
+svn co svn://subversion.flymine.org/branches/intermine_0_98
+LGPL-3

diff --git a/sci-biology/MochiView/MochiView-1.45.ebuild 
b/sci-biology/MochiView/MochiView-1.45.ebuild
new file mode 100644
index 000..5e9344a
--- /dev/null
+++ b/sci-biology/MochiView/MochiView-1.45.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public Li

[gentoo-commits] proj/sci:master commit in: sci-biology/ICC/

2015-01-07 Thread Martin Mokrejs

commit: 7286213decca43e6185a611dc357a71557fd84c9
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Wed Jan  7 20:39:33 2015 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Wed Jan  7 20:39:33 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7286213d

sci-biology/ICC: initial ebuild, perl installation steps need to be fixed

---
 sci-biology/ICC/ChangeLog|  9 ++
 sci-biology/ICC/ICC-2.0.1.ebuild | 61 
 sci-biology/ICC/metadata.xml |  9 ++
 3 files changed, 79 insertions(+)

diff --git a/sci-biology/ICC/ChangeLog b/sci-biology/ICC/ChangeLog
new file mode 100644
index 000..cd415fd
--- /dev/null
+++ b/sci-biology/ICC/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/ICC
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ICC-2.0.1 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs  +ICC-2.0.1.ebuild:
+  initial ebuild, perl installation steps need to be fixed
+

diff --git a/sci-biology/ICC/ICC-2.0.1.ebuild b/sci-biology/ICC/ICC-2.0.1.ebuild
new file mode 100644
index 000..5e5fb5c
--- /dev/null
+++ b/sci-biology/ICC/ICC-2.0.1.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+DESCRIPTION="Error corrector for Roche/454 and IonTorrent data with indel and 
carryforward, SNP and haplotype calling"
+HOMEPAGE="http://indra.mullins.microbiol.washington.edu/ICC";
+SRC_URI="http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip
 -> ICC_v2.0.1.zip"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-lang/perl
+   sci-biology/ncbi-tools++"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"
+
+src_install(){
+   dobin Scripts/*.pl
+   dodoc README.txt
+
+   # BUG: does not work
+   cd Scripts/lib || die
+   perl-module_src_install DESTDIR="${D}" *.pm Parallel/ForkManager.pm # 
install into @INC path
+
+}
+
+#testing: Blast/Linux/LICENSE  OK
+#testing: Example/exampleReads.fas   OK
+#testing: Example/exampleReads.qual   OK
+#testing: Example/exampleReference.fas   OK
+#testing: README.mdOK
+#testing: README.txt   OK
+#testing: Scripts/ OK
+#testing: Scripts/CC.plOK
+#testing: Scripts/HIC.pl   OK
+#testing: Scripts/IC.plOK
+#testing: Scripts/alignRegion.pl   OK
+#testing: Scripts/config.plOK
+#testing: Scripts/lib/ OK
+#testing: Scripts/lib/.DS_StoreOK
+#testing: Scripts/lib/Parallel/OK
+#testing: Scripts/lib/Parallel/ForkManager.pm   OK
+#testing: Scripts/lib/paths.pm OK
+#testing: Scripts/lib/seqAlign.pm   OK
+#testing: Scripts/lib/utils.pm OK
+#testing: Scripts/ntFreq.plOK
+#testing: Scripts/readQualFilter.pl   OK
+#testing: Scripts/retrieveRegion.pl   OK
+#testing: Scripts/retrieveWindows.pl   OK
+#testing: Scripts/runBLAST.pl  OK
+#testing: Scripts/runICC.plOK
+#testing: Scripts/uniqueReads.pl   OK
+#testing: VersionHistory.txt   OK
+

diff --git a/sci-biology/ICC/metadata.xml b/sci-biology/ICC/metadata.xml
new file mode 100644
index 000..2bc8930
--- /dev/null
+++ b/sci-biology/ICC/metadata.xml
@@ -0,0 +1,9 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+  sci-biology
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+

[gentoo-commits] gentoo-x86 commit in sys-devel/automake: ChangeLog automake-1.15.ebuild

2015-01-07 Thread Lars Wendler (polynomial-c)

polynomial-c15/01/07 21:26:13

  Modified: ChangeLog
  Added:automake-1.15.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0x981CA6FC)

Revision  ChangesPath
1.218sys-devel/automake/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake/ChangeLog?rev=1.218&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake/ChangeLog?rev=1.218&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake/ChangeLog?r1=1.217&r2=1.218

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-devel/automake/ChangeLog,v
retrieving revision 1.217
retrieving revision 1.218
diff -u -r1.217 -r1.218
--- ChangeLog   15 Nov 2014 06:42:33 -  1.217
+++ ChangeLog   7 Jan 2015 21:26:13 -   1.218
@@ -1,6 +1,11 @@
 # ChangeLog for sys-devel/automake
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-devel/automake/ChangeLog,v 1.217 
2014/11/15 06:42:33 vapier Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-devel/automake/ChangeLog,v 1.218 
2015/01/07 21:26:13 polynomial-c Exp $
+
+*automake-1.15 (07 Jan 2015)
+
+  07 Jan 2015; Lars Wendler  +automake-1.15.ebuild:
+  Version bump.
 
 *automake-1.4_p6-r2 (15 Nov 2014)
 



1.1  sys-devel/automake/automake-1.15.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake/automake-1.15.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake/automake-1.15.ebuild?rev=1.1&content-type=text/plain

Index: automake-1.15.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sys-devel/automake/automake-1.15.ebuild,v 
1.1 2015/01/07 21:26:13 polynomial-c Exp $

EAPI="4"

inherit eutils versionator

if [[ ${PV/_beta} == ${PV} ]]; then
MY_P=${P}
SRC_URI="mirror://gnu/${PN}/${P}.tar.xz
ftp://alpha.gnu.org/pub/gnu/${PN}/${MY_P}.tar.xz";
else
MY_PV="$(get_major_version).$(($(get_version_component_range 2)-1))b"
MY_P="${PN}-${MY_PV}"

# Alpha/beta releases are not distributed on the usual mirrors.
SRC_URI="ftp://alpha.gnu.org/pub/gnu/${PN}/${MY_P}.tar.xz";
fi

DESCRIPTION="Used to generate Makefile.in from Makefile.am"
HOMEPAGE="http://www.gnu.org/software/automake/";

LICENSE="GPL-2"
# Use Gentoo versioning for slotting.
SLOT="${PV:0:4}"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd"
IUSE=""

RDEPEND="dev-lang/perl
>=sys-devel/automake-wrapper-10
>=sys-devel/autoconf-2.69
sys-devel/gnuconfig"
DEPEND="${RDEPEND}
sys-apps/help2man"

S="${WORKDIR}/${MY_P}"

src_prepare() {
export WANT_AUTOCONF=2.5
}

src_configure() {
econf --docdir=/usr/share/doc/${PF} HELP2MAN=true
}

src_compile() {
emake APIVERSION="${SLOT}" pkgvdatadir="/usr/share/${PN}-${SLOT}"
}

src_test() {
emake check
}

# slot the info pages.  do this w/out munging the source so we don't have
# to depend on texinfo to regen things.  #464146 (among others)
slot_info_pages() {
pushd "${D}"/usr/share/info >/dev/null
rm -f dir

# Rewrite all the references to other pages.
# before: * aclocal-invocation: (automake)aclocal Invocation.   
Generating aclocal.m4.
# after:  * aclocal-invocation v1.13: (automake-1.13)aclocal 
Invocation.   Generating aclocal.m4.
local p pages=( *.info ) args=()
for p in "${pages[@]/%.info}" ; do
args+=(
-e "/START-INFO-DIR-ENTRY/,/END-INFO-DIR-ENTRY/s|: 
(${p})| v${SLOT}&|"
-e "s:(${p}):(${p}-${SLOT}):g"
)
done
sed -i "${args[@]}" * || die

# Rewrite all the file references, and rename them in the process.
local f d
for f in * ; do
d=${f/.info/-${SLOT}.info}
mv "${f}" "${d}" || die
sed -i -e "s:${f}:${d}:g" * || die
done

popd >/dev/null
}

src_install() {
emake DESTDIR="${D}" install \
APIVERSION="${SLOT}" pkgvdatadir="/usr/share/${PN}-${SLOT}"
slot_info_pages
rm "${D}"/usr/share/aclocal/README || die
rmdir "${D}"/usr/share/aclocal || die
dodoc AUTHORS ChangeLog NEWS README THANKS

rm \
"${D}"/usr/bin/{aclocal,automake} \
"${D}"/usr/share/man/man1/{aclocal,automake}.1 || die

# remove all config.guess and config.sub file

[gentoo-commits] gentoo-x86 commit in sys-devel/automake-wrapper: ChangeLog automake-wrapper-10.ebuild

2015-01-07 Thread Lars Wendler (polynomial-c)

polynomial-c15/01/07 21:24:41

  Modified: ChangeLog
  Added:automake-wrapper-10.ebuild
  Log:
  Version bump for automake-1.15
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0x981CA6FC)

Revision  ChangesPath
1.80 sys-devel/automake-wrapper/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/ChangeLog?rev=1.80&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/ChangeLog?rev=1.80&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/ChangeLog?r1=1.79&r2=1.80

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-devel/automake-wrapper/ChangeLog,v
retrieving revision 1.79
retrieving revision 1.80
diff -u -r1.79 -r1.80
--- ChangeLog   17 Jan 2014 04:23:05 -  1.79
+++ ChangeLog   7 Jan 2015 21:24:41 -   1.80
@@ -1,6 +1,12 @@
 # ChangeLog for sys-devel/automake-wrapper
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-devel/automake-wrapper/ChangeLog,v 1.79 
2014/01/17 04:23:05 vapier Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-devel/automake-wrapper/ChangeLog,v 1.80 
2015/01/07 21:24:41 polynomial-c Exp $
+
+*automake-wrapper-10 (07 Jan 2015)
+
+  07 Jan 2015; Lars Wendler 
+  +automake-wrapper-10.ebuild, +files/am-wrapper-10.sh:
+  Version bump for automake-1.15.
 
   17 Jan 2014; Mike Frysinger  automake-wrapper-9.ebuild:
   Add arm64 keywords.



1.1  sys-devel/automake-wrapper/automake-wrapper-10.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/automake-wrapper-10.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/automake-wrapper-10.ebuild?rev=1.1&content-type=text/plain

Index: automake-wrapper-10.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sys-devel/automake-wrapper/automake-wrapper-10.ebuild,v 
1.1 2015/01/07 21:24:41 polynomial-c Exp $

EAPI=4

DESCRIPTION="wrapper for automake to manage multiple automake versions"
HOMEPAGE="http://www.gentoo.org/";
SRC_URI=""

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~x64-freebsd 
~x86-freebsd ~hppa-hpux ~ia64-hpux ~x86-interix ~amd64-linux ~arm-linux 
~ia64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint 
~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris"
IUSE=""

S=${WORKDIR}

src_unpack() {
cp "${FILESDIR}"/am-wrapper-${PV}.sh "${S}"/ || die
}

src_prepare() {
# usr/bin/aclocal: bad substitution -> /bin/sh != POSIX shell
if use prefix ; then
sed -i -e '1c\#!'"${EPREFIX}"'/bin/sh' \
"${S}"/am-wrapper-${PV}.sh || die
fi
}

src_install() {
newbin "${S}"/am-wrapper-${PV}.sh automake
dosym automake /usr/bin/aclocal

keepdir /usr/share/aclocal
}

[gentoo-commits] gentoo-x86 commit in sys-devel/automake-wrapper/files: am-wrapper-10.sh

2015-01-07 Thread Lars Wendler (polynomial-c)

polynomial-c15/01/07 21:24:41

  Added:am-wrapper-10.sh
  Log:
  Version bump for automake-1.15
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0x981CA6FC)

Revision  ChangesPath
1.1  sys-devel/automake-wrapper/files/am-wrapper-10.sh

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/files/am-wrapper-10.sh?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-devel/automake-wrapper/files/am-wrapper-10.sh?rev=1.1&content-type=text/plain

Index: am-wrapper-10.sh
===
#!/bin/sh
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sys-devel/automake-wrapper/files/am-wrapper-10.sh,v 1.1 
2015/01/07 21:24:41 polynomial-c Exp $

# Executes the correct automake version.
#
# If WANT_AUTOMAKE is set (can be a whitespace delimited list of versions):
#  - attempt to find an installed version using those
#  - if magic keyword 'latest' is found, pick the latest version that exists
#  - if nothing found, warn, and proceed as if WANT_AUTOMAKE was not set (below)
# If WANT_AUTOMAKE is not set:
#  - Try to detect the version of automake used to generate things (look at
#Makefile.in and aclocal.m4 and any other useful file)
#  - If detected version is not found, warn and proceed as if blank slate
#  - Try to locate the latest version of automake that exists and run it

(set -o posix) 2>/dev/null && set -o posix

_stderr() { printf 'am-wrapper: %s: %b\n' "${argv0}" "$*" 1>&2; }
warn() { _stderr "warning: $*"; }
err() { _stderr "error: $*"; exit 1; }
unset IFS
which() {
local p
IFS=: # we don't use IFS anywhere, so don't bother saving/restoring
for p in ${PATH} ; do
p="${p}/$1"
[ -e "${p}" ] && echo "${p}" && return 0
done
unset IFS
return 1
}

#
# Sanitize argv[0] since it isn't always a full path #385201
#
argv0=${0##*/}
case $0 in
${argv0})
# find it in PATH
if ! full_argv0=$(which "${argv0}") ; then
err "could not locate ${argv0}; file a bug"
fi
;;
*)
# re-use full/relative paths
full_argv0=$0
;;
esac

if ! seq 0 0 2>/dev/null 1>&2 ; then #338518
seq() {
local f l i
case $# in
1) f=1 i=1 l=$1;;
2) f=$1 i=1 l=$2;;
3) f=$1 i=$2 l=$3;;
esac
while :; do
[ $l -lt $f -a $i -gt 0 ] && break
[ $f -lt $l -a $i -lt 0 ] && break
echo $f
: $(( f += i ))
done
return 0
}
fi

#
# Set up bindings between actual version and WANT_AUTOMAKE;
# Start with last known versions to speed up lookup process.
#
LAST_KNOWN_AUTOMAKE_VER="15"
vers=$(printf '1.%s ' `seq ${LAST_KNOWN_AUTOMAKE_VER} -1 4`)

#
# Helper to scan for a usable program based on version.
#
binary=
all_vers=
find_binary() {
local v
all_vers="${all_vers} $*" # For error messages.
for v ; do
if [ -x "${full_argv0}-${v}" ] ; then
binary="${full_argv0}-${v}"
binary_ver=${v}
return 0
fi
done
return 1
}

#
# Try and find a usable automake version.  First check the WANT_AUTOMAKE
# setting (whitespace delimited list), then fallback to the latest.
#
find_latest() {
if ! find_binary ${vers} ; then
# Brute force it.
find_binary $(printf '1.%s ' `seq 99 -1 
${LAST_KNOWN_AUTOMAKE_VER}`)
fi
}
for wx in ${WANT_AUTOMAKE:-latest} ; do
if [ "${wx}" = "latest" ] ; then
find_latest && break
else
find_binary ${wx} && break
fi
done

if [ -z "${binary}" ] && [ -n "${WANT_AUTOMAKE}" ] ; then
warn "could not locate installed version for 
WANT_AUTOMAKE='${WANT_AUTOMAKE}'; ignoring"
unset WANT_AUTOMAKE
find_latest
fi

if [ -z "${binary}" ] ; then
err "Unable to locate any usuable version of automake.\n" \
"\tI tried these versions:${all_vers}\n" \
"\tWith a base name of '${full_argv0}'."
fi

#
# autodetect helpers
#
do_awk() {
local file=$1 ; shift
local v=$(awk -v regex="$*" '{
if (ret = match($0, regex)) {
s = substr($0, ret, RLENGTH)
ret = match(s, "[0-9]\\.[0-9]+")
print substr(s, ret, RLENGTH)
exit
}
}' "${file}")
case " ${auto_vers} " in
*" ${v}

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/, gkeys-gen/

2015-01-07 Thread Brian Dolbec

commit: 512495d435ddd0714d0780faf4c03117dc1ce989
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 21:01:29 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 21:01:29 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=512495d4

gkeys, gkeys-gen: Make sdist do .bz2 compression 

---
 gkeys-gen/setup.py | 12 
 gkeys/setup.py | 12 
 2 files changed, 24 insertions(+)

diff --git a/gkeys-gen/setup.py b/gkeys-gen/setup.py
index 1512219..5fae8f4 100755
--- a/gkeys-gen/setup.py
+++ b/gkeys-gen/setup.py
@@ -6,6 +6,7 @@ import sys
 
 from distutils.core import setup, Command
 from distutils.command.build import build
+from distutils.command.sdist import sdist
 from glob import glob
 
 from gkeygen import __version__, __license__
@@ -62,6 +63,16 @@ class build_man(Command):
 man.make_subpages(Action_Map, Available_Actions)
 
 
+class x_sdist(sdist):
+""" sdist defaulting to .tar.bz2 format """
+
+def finalize_options(self):
+if self.formats is None:
+self.formats = ['bztar']
+
+sdist.finalize_options(self)
+
+
 setup(
 name='gkeys-gen',
 version=__version__,
@@ -84,6 +95,7 @@ setup(
 cmdclass = {
 'build': x_build,
 'build_man': build_man,
+'sdist': x_sdist,
 },
 classifiers=[
 'Development Status :: 3 - Alpha',

diff --git a/gkeys/setup.py b/gkeys/setup.py
index 5a20738..12a3632 100755
--- a/gkeys/setup.py
+++ b/gkeys/setup.py
@@ -6,6 +6,7 @@ import sys
 
 from distutils.core import setup, Command
 from distutils.command.build import build
+from distutils.command.sdist import sdist
 from glob import glob
 
 from gkeys import __version__, __license__
@@ -62,6 +63,16 @@ class build_man(Command):
 man.make_subpages(Action_Map, Available_Actions)
 
 
+class x_sdist(sdist):
+""" sdist defaulting to .tar.bz2 format """
+
+def finalize_options(self):
+if self.formats is None:
+self.formats = ['bztar']
+
+sdist.finalize_options(self)
+
+
 setup(
 name='gkeys',
 version=__version__,
@@ -85,6 +96,7 @@ setup(
 cmdclass = {
 'build': x_build,
 'build_man': build_man,
+'sdist': x_sdist,
 },
 classifiers=[
 'Development Status :: 3 - Alpha',

[gentoo-commits] gentoo-x86 commit in sys-kernel/hardened-sources: hardened-sources-3.18.1-r1.ebuild ChangeLog

2015-01-07 Thread Anthony G. Basile (blueness)

blueness15/01/07 20:59:15

  Modified: ChangeLog
  Added:hardened-sources-3.18.1-r1.ebuild
  Log:
  vanilla-3.18.1 + genpatches-3.18-2 + grsecurity-3.0-3.18.1-201501042021
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.1197   sys-kernel/hardened-sources/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1197&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1197&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?r1=1.1196&r2=1.1197

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v
retrieving revision 1.1196
retrieving revision 1.1197
diff -u -r1.1196 -r1.1197
--- ChangeLog   7 Jan 2015 20:56:17 -   1.1196
+++ ChangeLog   7 Jan 2015 20:59:15 -   1.1197
@@ -1,6 +1,12 @@
 # ChangeLog for sys-kernel/hardened-sources
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1196 2015/01/07 20:56:17 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1197 2015/01/07 20:59:15 blueness Exp $
+
+*hardened-sources-3.18.1-r1 (07 Jan 2015)
+
+  07 Jan 2015; Anthony G. Basile 
+  +hardened-sources-3.18.1-r1.ebuild:
+  vanilla-3.18.1 + genpatches-3.18-2 + grsecurity-3.0-3.18.1-201501042021
 
 *hardened-sources-3.14.27-r3 (07 Jan 2015)
 



1.1  
sys-kernel/hardened-sources/hardened-sources-3.18.1-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.18.1-r1.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.18.1-r1.ebuild?rev=1.1&content-type=text/plain

Index: hardened-sources-3.18.1-r1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.18.1-r1.ebuild,v
 1.1 2015/01/07 20:59:15 blueness Exp $

EAPI="5"

ETYPE="sources"
K_WANT_GENPATCHES="base"
K_GENPATCHES_VER="3"
K_DEBLOB_AVAILABLE="1"

inherit kernel-2
detect_version

HGPV="${KV_MAJOR}.${KV_MINOR}.${KV_PATCH}-2"
HGPV_URI="http://dev.gentoo.org/~blueness/hardened-sources/hardened-patches/hardened-patches-${HGPV}.extras.tar.bz2";
SRC_URI="${KERNEL_URI} ${HGPV_URI} ${GENPATCHES_URI} ${ARCH_URI}"

UNIPATCH_LIST="${DISTDIR}/hardened-patches-${HGPV}.extras.tar.bz2"
UNIPATCH_EXCLUDE="
1500_XATTR_USER_PREFIX.patch
2900_dev-root-proc-mount-fix.patch"

DESCRIPTION="Hardened kernel sources (kernel series ${KV_MAJOR}.${KV_MINOR})"
HOMEPAGE="http://www.gentoo.org/proj/en/hardened/";
IUSE="deblob"

KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86"

RDEPEND=">=sys-devel/gcc-4.5"

pkg_postinst() {
kernel-2_pkg_postinst

local GRADM_COMPAT="sys-apps/gradm-3.0*"

ewarn
ewarn "Users of grsecurity's RBAC system must ensure they are using"
ewarn "${GRADM_COMPAT}, which is compatible with ${PF}."
ewarn "It is strongly recommended that the following command is issued"
ewarn "prior to booting a ${PF} kernel for the first time:"
ewarn
ewarn "emerge -na =${GRADM_COMPAT}"
ewarn
}

[gentoo-commits] gentoo-x86 commit in sys-kernel/hardened-sources: hardened-sources-3.14.27-r3.ebuild ChangeLog

2015-01-07 Thread Anthony G. Basile (blueness)

blueness15/01/07 20:56:17

  Modified: ChangeLog
  Added:hardened-sources-3.14.27-r3.ebuild
  Log:
  vanilla-3.14.27 + genpatches-3.14-32 + grsecurity-3.0-3.14.27-201501042018
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.1196   sys-kernel/hardened-sources/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1196&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1196&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?r1=1.1195&r2=1.1196

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v
retrieving revision 1.1195
retrieving revision 1.1196
diff -u -r1.1195 -r1.1196
--- ChangeLog   7 Jan 2015 20:52:45 -   1.1195
+++ ChangeLog   7 Jan 2015 20:56:17 -   1.1196
@@ -1,6 +1,12 @@
 # ChangeLog for sys-kernel/hardened-sources
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1195 2015/01/07 20:52:45 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1196 2015/01/07 20:56:17 blueness Exp $
+
+*hardened-sources-3.14.27-r3 (07 Jan 2015)
+
+  07 Jan 2015; Anthony G. Basile 
+  +hardened-sources-3.14.27-r3.ebuild:
+  vanilla-3.14.27 + genpatches-3.14-32 + grsecurity-3.0-3.14.27-201501042018
 
 *hardened-sources-3.2.66 (07 Jan 2015)
 



1.1  
sys-kernel/hardened-sources/hardened-sources-3.14.27-r3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.14.27-r3.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.14.27-r3.ebuild?rev=1.1&content-type=text/plain

Index: hardened-sources-3.14.27-r3.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.14.27-r3.ebuild,v
 1.1 2015/01/07 20:56:17 blueness Exp $

EAPI="5"

ETYPE="sources"
K_WANT_GENPATCHES="base"
K_GENPATCHES_VER="32"
K_DEBLOB_AVAILABLE="1"

inherit kernel-2
detect_version

HGPV="${KV_MAJOR}.${KV_MINOR}.${KV_PATCH}-4"
HGPV_URI="http://dev.gentoo.org/~blueness/hardened-sources/hardened-patches/hardened-patches-${HGPV}.extras.tar.bz2";
SRC_URI="${KERNEL_URI} ${HGPV_URI} ${GENPATCHES_URI} ${ARCH_URI}"

UNIPATCH_LIST="${DISTDIR}/hardened-patches-${HGPV}.extras.tar.bz2"
UNIPATCH_EXCLUDE="
1500_XATTR_USER_PREFIX.patch
2900_dev-root-proc-mount-fix.patch"

DESCRIPTION="Hardened kernel sources (kernel series ${KV_MAJOR}.${KV_MINOR})"
HOMEPAGE="http://www.gentoo.org/proj/en/hardened/";
IUSE="deblob"

KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86"

RDEPEND=">=sys-devel/gcc-4.5"

pkg_postinst() {
kernel-2_pkg_postinst

local GRADM_COMPAT="sys-apps/gradm-3.0*"

ewarn
ewarn "Users of grsecurity's RBAC system must ensure they are using"
ewarn "${GRADM_COMPAT}, which is compatible with ${PF}."
ewarn "It is strongly recommended that the following command is issued"
ewarn "prior to booting a ${PF} kernel for the first time:"
ewarn
ewarn "emerge -na =${GRADM_COMPAT}"
ewarn
}

[gentoo-commits] gentoo-x86 commit in sys-kernel/hardened-sources: hardened-sources-3.2.66.ebuild ChangeLog

2015-01-07 Thread Anthony G. Basile (blueness)

blueness15/01/07 20:52:45

  Modified: ChangeLog
  Added:hardened-sources-3.2.66.ebuild
  Log:
  vanilla-3.2.66 + genpatches-3.2-16 + grsecurity-3.0-3.2.66-201501051839
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.1195   sys-kernel/hardened-sources/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1195&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?rev=1.1195&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/ChangeLog?r1=1.1194&r2=1.1195

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v
retrieving revision 1.1194
retrieving revision 1.1195
diff -u -r1.1194 -r1.1195
--- ChangeLog   30 Dec 2014 17:06:04 -  1.1194
+++ ChangeLog   7 Jan 2015 20:52:45 -   1.1195
@@ -1,6 +1,12 @@
 # ChangeLog for sys-kernel/hardened-sources
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1194 2014/12/30 17:06:04 blueness Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/ChangeLog,v 
1.1195 2015/01/07 20:52:45 blueness Exp $
+
+*hardened-sources-3.2.66 (07 Jan 2015)
+
+  07 Jan 2015; Anthony G. Basile 
+  +hardened-sources-3.2.66.ebuild:
+  vanilla-3.2.66 + genpatches-3.2-16 + grsecurity-3.0-3.2.66-201501051839
 
   30 Dec 2014; Anthony G. Basile 
   -hardened-sources-3.14.12-r2.ebuild, -hardened-sources-3.14.15.ebuild,



1.1  sys-kernel/hardened-sources/hardened-sources-3.2.66.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.2.66.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.2.66.ebuild?rev=1.1&content-type=text/plain

Index: hardened-sources-3.2.66.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sys-kernel/hardened-sources/hardened-sources-3.2.66.ebuild,v
 1.1 2015/01/07 20:52:45 blueness Exp $

EAPI="5"

ETYPE="sources"
K_WANT_GENPATCHES="base extras"
K_GENPATCHES_VER="16"
K_DEBLOB_AVAILABLE="1"

inherit kernel-2
detect_version

HGPV="${KV_MAJOR}.${KV_MINOR}.${KV_PATCH}-1"
HGPV_URI="http://dev.gentoo.org/~blueness/hardened-sources/hardened-patches/hardened-patches-${HGPV}.extras.tar.bz2";
SRC_URI="${KERNEL_URI} ${HGPV_URI} ${GENPATCHES_URI} ${ARCH_URI}"

UNIPATCH_LIST="${DISTDIR}/hardened-patches-${HGPV}.extras.tar.bz2"
UNIPATCH_EXCLUDE="4200_fbcondecor-0.9.6.patch"

DESCRIPTION="Hardened kernel sources (kernel series ${KV_MAJOR}.${KV_MINOR})"
HOMEPAGE="http://www.gentoo.org/proj/en/hardened/";
IUSE="deblob"

KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86"

RDEPEND=">=sys-devel/gcc-4.5"

pkg_postinst() {
kernel-2_pkg_postinst

local GRADM_COMPAT="sys-apps/gradm-3.0*"

ewarn
ewarn "Users of grsecurity's RBAC system must ensure they are using"
ewarn "${GRADM_COMPAT}, which is compatible with ${PF}."
ewarn "It is strongly recommended that the following command is issued"
ewarn "prior to booting a ${PF} kernel for the first time:"
ewarn
ewarn "emerge -na =${GRADM_COMPAT}"
ewarn
}

[gentoo-commits] proj/kde:master commit in: kde-frameworks/solid/, kde-frameworks/kplotting/, ...

2015-01-07 Thread Alexey Shvetsov

commit: 8d25e2a3d34e2fd4aa1595f7c75517bb72e5b6fa
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jan  7 20:07:41 2015 +
Commit: Alexey Shvetsov  gentoo  org>
CommitDate: Wed Jan  7 20:07:41 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/kde.git;a=commit;h=8d25e2a3

[kde-frameworks] Add keywords

Package-Manager: portage-2.2.15

---
 kde-frameworks/attica/attica-5.6.0.ebuild | 2 +-
 kde-frameworks/frameworkintegration/frameworkintegration-5.6.0.ebuild | 2 +-
 kde-frameworks/kactivities/kactivities-5.6.0.ebuild   | 2 +-
 kde-frameworks/kapidox/kapidox-5.6.0.ebuild   | 2 +-
 kde-frameworks/karchive/karchive-5.6.0.ebuild | 2 +-
 kde-frameworks/kauth/kauth-5.6.0.ebuild   | 2 +-
 kde-frameworks/kbookmarks/kbookmarks-5.6.0.ebuild | 2 +-
 kde-frameworks/kcmutils/kcmutils-5.6.0.ebuild | 2 +-
 kde-frameworks/kcodecs/kcodecs-5.6.0.ebuild   | 2 +-
 kde-frameworks/kcompletion/kcompletion-5.6.0.ebuild   | 2 +-
 kde-frameworks/kconfig/kconfig-5.6.0.ebuild   | 2 +-
 kde-frameworks/kconfigwidgets/kconfigwidgets-5.6.0.ebuild | 2 +-
 kde-frameworks/kcoreaddons/kcoreaddons-5.6.0.ebuild   | 2 +-
 kde-frameworks/kcrash/kcrash-5.6.0.ebuild | 2 +-
 kde-frameworks/kdbusaddons/kdbusaddons-5.6.0.ebuild   | 2 +-
 kde-frameworks/kdeclarative/kdeclarative-5.6.0.ebuild | 2 +-
 kde-frameworks/kded/kded-5.6.0.ebuild | 2 +-
 kde-frameworks/kdelibs4support/kdelibs4support-5.6.0.ebuild   | 2 +-
 kde-frameworks/kdesignerplugin/kdesignerplugin-5.6.0.ebuild   | 2 +-
 kde-frameworks/kdesu/kdesu-5.6.0.ebuild   | 2 +-
 kde-frameworks/kdewebkit/kdewebkit-5.6.0.ebuild   | 2 +-
 kde-frameworks/kdnssd/kdnssd-5.6.0.ebuild | 2 +-
 kde-frameworks/kdoctools/kdoctools-5.6.0.ebuild   | 2 +-
 kde-frameworks/kemoticons/kemoticons-5.6.0.ebuild | 2 +-
 kde-frameworks/kglobalaccel/kglobalaccel-5.6.0.ebuild | 2 +-
 kde-frameworks/kguiaddons/kguiaddons-5.6.0.ebuild | 2 +-
 kde-frameworks/khtml/khtml-5.6.0.ebuild   | 2 +-
 kde-frameworks/ki18n/ki18n-5.6.0.ebuild   | 2 +-
 kde-frameworks/kiconthemes/kiconthemes-5.6.0.ebuild   | 2 +-
 kde-frameworks/kidletime/kidletime-5.6.0.ebuild   | 2 +-
 kde-frameworks/kimageformats/kimageformats-5.6.0.ebuild   | 2 +-
 kde-frameworks/kinit/kinit-5.6.0.ebuild   | 2 +-
 kde-frameworks/kio/kio-5.6.0.ebuild   | 2 +-
 kde-frameworks/kitemmodels/kitemmodels-5.6.0.ebuild   | 2 +-
 kde-frameworks/kitemviews/kitemviews-5.6.0.ebuild | 2 +-
 kde-frameworks/kjobwidgets/kjobwidgets-5.6.0.ebuild   | 2 +-
 kde-frameworks/kjs/kjs-5.6.0.ebuild   | 2 +-
 kde-frameworks/kjsembed/kjsembed-5.6.0.ebuild | 2 +-
 kde-frameworks/kmediaplayer/kmediaplayer-5.6.0.ebuild | 2 +-
 kde-frameworks/knewstuff/knewstuff-5.6.0.ebuild   | 2 +-
 kde-frameworks/knotifications/knotifications-5.6.0.ebuild | 2 +-
 kde-frameworks/knotifyconfig/knotifyconfig-5.6.0.ebuild   | 2 +-
 kde-frameworks/kpackage/kpackage-5.6.0.ebuild | 2 +-
 kde-frameworks/kparts/kparts-5.6.0.ebuild | 2 +-
 kde-frameworks/kplotting/kplotting-5.6.0.ebuild   | 2 +-
 kde-frameworks/kpty/kpty-5.6.0.ebuild | 2 +-
 kde-frameworks/kross/kross-5.6.0.ebuild   | 2 +-
 kde-frameworks/krunner/krunner-5.6.0.ebuild   | 2 +-
 kde-frameworks/kservice/kservice-5.6.0.ebuild | 2 +-
 kde-frameworks/ktexteditor/ktexteditor-5.6.0.ebuild   | 2 +-
 kde-frameworks/ktextwidgets/ktextwidgets-5.6.0.ebuild | 2 +-
 kde-frameworks/kunitconversion/kunitconversion-5.6.0.ebuild   | 2 +-
 kde-frameworks/kwallet/kwallet-5.6.0.ebuild   | 2 +-
 kde-frameworks/kwidgetsaddons/kwidgetsaddons-5.6.0.ebuild | 2 +-
 kde-frameworks/kwindowsystem/kwindowsystem-5.6.0.ebuild   | 2 +-
 kde-frameworks/kxmlgui/kxmlgui-5.6.0.ebuild   | 2 +-
 kde-frameworks/networkmanager-qt/networkmanager-qt-5.6.0.ebuild   | 2 +-
 kde-frameworks/plasma/plasma-5.6.0.ebuild | 2 +-
 kde-frameworks/solid/solid-5.6.0.ebuild   | 2 +-
 kde-frameworks/sonnet/s

[gentoo-commits] gentoo-x86 commit in sys-apps/hwids: hwids-20150107.ebuild ChangeLog

2015-01-07 Thread Diego Petteno (flameeyes)

flameeyes15/01/07 20:11:04

  Modified: ChangeLog
  Added:hwids-20150107.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
1CD13C8AD4301342)

Revision  ChangesPath
1.157sys-apps/hwids/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-apps/hwids/ChangeLog?rev=1.157&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-apps/hwids/ChangeLog?rev=1.157&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-apps/hwids/ChangeLog?r1=1.156&r2=1.157

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-apps/hwids/ChangeLog,v
retrieving revision 1.156
retrieving revision 1.157
diff -u -r1.156 -r1.157
--- ChangeLog   14 Dec 2014 05:17:21 -  1.156
+++ ChangeLog   7 Jan 2015 20:11:04 -   1.157
@@ -1,6 +1,11 @@
 # ChangeLog for sys-apps/hwids
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-apps/hwids/ChangeLog,v 1.156 2014/12/14 
05:17:21 floppym Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-apps/hwids/ChangeLog,v 1.157 2015/01/07 
20:11:04 flameeyes Exp $
+
+*hwids-20150107 (07 Jan 2015)
+
+  07 Jan 2015; Diego E. Pettenò  +hwids-20150107.ebuild:
+  Version bump.
 
 *hwids-20141214 (14 Dec 2014)
 



1.1  sys-apps/hwids/hwids-20150107.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-apps/hwids/hwids-20150107.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-apps/hwids/hwids-20150107.ebuild?rev=1.1&content-type=text/plain

Index: hwids-20150107.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sys-apps/hwids/hwids-20150107.ebuild,v 1.1 
2015/01/07 20:11:04 flameeyes Exp $

EAPI=5
inherit udev eutils

DESCRIPTION="Hardware (PCI, USB, OUI, IAB) IDs databases"
HOMEPAGE="https://github.com/gentoo/hwids";
if [[ ${PV} == "" ]]; then
EGIT_REPO_URI="${HOMEPAGE}.git"
inherit git-2
else
SRC_URI="${HOMEPAGE}/archive/${P}.tar.gz"
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 
~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~x64-freebsd ~amd64-linux 
~arm-linux ~x86-linux"
fi

LICENSE="|| ( GPL-2 BSD ) public-domain"
SLOT="0"
IUSE="+net +pci +udev +usb"

DEPEND="udev? (
dev-lang/perl
>=virtual/udev-206
)"
[[ ${PV} == "" ]] && DEPEND+=" udev? ( net-misc/curl )"
RDEPEND="!http://cgit.freedesktop.org/systemd/systemd/commit/?id=1fab57c209035f7e66198343074e9cee06718bda
[ "${ROOT:-/}" = "/" ] && udevadm control --reload
fi
}

[gentoo-commits] gentoo-x86 commit in gnome-base/dconf: ChangeLog dconf-0.12.1.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 20:03:26

  Modified: ChangeLog
  Removed:  dconf-0.12.1.ebuild
  Log:
  drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.74 gnome-base/dconf/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/dconf/ChangeLog?rev=1.74&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/dconf/ChangeLog?rev=1.74&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/dconf/ChangeLog?r1=1.73&r2=1.74

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/dconf/ChangeLog,v
retrieving revision 1.73
retrieving revision 1.74
diff -u -r1.73 -r1.74
--- ChangeLog   22 Dec 2014 21:16:30 -  1.73
+++ ChangeLog   7 Jan 2015 20:03:26 -   1.74
@@ -1,6 +1,9 @@
 # ChangeLog for gnome-base/dconf
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/dconf/ChangeLog,v 1.73 
2014/12/22 21:16:30 eva Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/dconf/ChangeLog,v 1.74 
2015/01/07 20:03:26 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  -dconf-0.12.1.ebuild:
+  drop old
 
 *dconf-0.22.0 (22 Dec 2014)

[gentoo-commits] gentoo-x86 commit in sys-libs/freeipmi: freeipmi-1.4.8.ebuild ChangeLog

2015-01-07 Thread Diego Petteno (flameeyes)

flameeyes15/01/07 20:02:22

  Modified: ChangeLog
  Added:freeipmi-1.4.8.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
1CD13C8AD4301342)

Revision  ChangesPath
1.88 sys-libs/freeipmi/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/freeipmi/ChangeLog?rev=1.88&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/freeipmi/ChangeLog?rev=1.88&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/freeipmi/ChangeLog?r1=1.87&r2=1.88

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-libs/freeipmi/ChangeLog,v
retrieving revision 1.87
retrieving revision 1.88
diff -u -r1.87 -r1.88
--- ChangeLog   12 Nov 2014 01:16:31 -  1.87
+++ ChangeLog   7 Jan 2015 20:02:22 -   1.88
@@ -1,6 +1,11 @@
 # ChangeLog for sys-libs/freeipmi
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-libs/freeipmi/ChangeLog,v 1.87 
2014/11/12 01:16:31 flameeyes Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-libs/freeipmi/ChangeLog,v 1.88 
2015/01/07 20:02:22 flameeyes Exp $
+
+*freeipmi-1.4.8 (07 Jan 2015)
+
+  07 Jan 2015; Diego E. Pettenò  +freeipmi-1.4.8.ebuild:
+  Version bump.
 
 *freeipmi-1.4.6-r1 (12 Nov 2014)
 



1.1  sys-libs/freeipmi/freeipmi-1.4.8.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/freeipmi/freeipmi-1.4.8.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/freeipmi/freeipmi-1.4.8.ebuild?rev=1.1&content-type=text/plain

Index: freeipmi-1.4.8.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sys-libs/freeipmi/freeipmi-1.4.8.ebuild,v 
1.1 2015/01/07 20:02:22 flameeyes Exp $

EAPI=5

#AUTOTOOLS_AUTORECONF=1
AT_M4DIR="config"

inherit eutils multilib autotools-utils

DESCRIPTION="Provides Remote-Console and System Management Software as per IPMI 
v1.5/2.0"
HOMEPAGE="http://www.gnu.org/software/freeipmi/";

MY_P="${P/_/.}"
S="${WORKDIR}"/${MY_P}
[[ ${MY_P} == *.beta* ]] && ALPHA="-alpha"
SRC_URI="mirror://gnu${ALPHA}/${PN}/${MY_P}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug nagios"

RDEPEND="dev-libs/libgcrypt:0"
DEPEND="${RDEPEND}
virtual/os-headers"
RDEPEND="${RDEPEND}
nagios? (
|| ( net-analyzer/icinga net-analyzer/nagios )
dev-lang/perl
)
sys-apps/openrc"

src_configure() {
local myeconfargs=(
$(use_enable debug)
--disable-static
--disable-init-scripts
--localstatedir=/var
)

autotools-utils_src_configure
}

# There are no tests
src_test() { :; }

src_install() {
autotools-utils_src_install

# freeipmi by defaults install _all_ commands to /usr/sbin, but
# quite a few can be run remotely as standard user, so move them
# in /usr/bin afterwards.
dodir /usr/bin
for file in ipmi{detect,ping,power,console}; do
mv "${D}"/usr/{s,}bin/${file} || die

# The default install symlinks these commands to add a dash
# after the ipmi prefix; we repeat those after move for
# consistency.
rm "${D}"/usr/sbin/${file/ipmi/ipmi-}
dosym ${file} /usr/bin/${file/ipmi/ipmi-}
done

# Install the nagios plugin in its proper place, if desired
if use nagios; then
dodir /usr/$(get_libdir)/nagios/plugins
mv 
"${D}"/usr/share/doc/${PF}/contrib/nagios/nagios_ipmi_sensors.pl \
"${D}"/usr/$(get_libdir)/nagios/plugins/ || die
fperms 0755 
/usr/$(get_libdir)/nagios/plugins/nagios_ipmi_sensors.pl

insinto /etc/icinga/conf.d
newins "${FILESDIR}"/freeipmi.icinga freeipmi-command.cfg
fi

dodoc AUTHORS ChangeLog* DISCLAIMER* NEWS README* TODO doc/*.txt

keepdir \
/var/cache/ipmimonitoringsdrcache \
/var/lib/freeipmi \
/var/log/ipmiconsole

# starting from version 1.2.0 the two daemons are similar enough
newinitd "${FILESDIR}"/bmc-watchdog.initd.4 ipmidetectd
newconfd "${FILESDIR}"/ipmidetectd.confd ipmidetectd

newinitd "${FILESDIR}"/bmc-watchdog.initd.4 bmc-watchdog
newconfd "${FILESDIR}"/bmc-watchdog.confd bmc-watchdog

newinitd "${FILESDIR}"/bmc-watchdog.initd.4 ipmiseld
newconfd "${FILESDIR}"/ipmiseld.confd ipmiseld
}

[gentoo-commits] gentoo-x86 commit in gnome-base/libgnome: libgnome-2.32.1-r1.ebuild ChangeLog

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 20:01:30

  Modified: libgnome-2.32.1-r1.ebuild ChangeLog
  Log:
  Update ebuild
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.10 gnome-base/libgnome/libgnome-2.32.1-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild?rev=1.10&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild?rev=1.10&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild?r1=1.9&r2=1.10

Index: libgnome-2.32.1-r1.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- libgnome-2.32.1-r1.ebuild   15 Jul 2012 17:24:58 -  1.9
+++ libgnome-2.32.1-r1.ebuild   7 Jan 2015 20:01:30 -   1.10
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild,v 1.9 
2012/07/15 17:24:58 armin76 Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/gnome-base/libgnome/libgnome-2.32.1-r1.ebuild,v 1.10 
2015/01/07 20:01:30 pacho Exp $
 
-EAPI="4"
+EAPI="5"
 GCONF_DEBUG="yes"
 GNOME2_LA_PUNT="yes"
 GNOME_TARBALL_SUFFIX="bz2"
@@ -15,38 +15,29 @@
 LICENSE="LGPL-2"
 SLOT="0"
 KEYWORDS="alpha amd64 arm ia64 ~mips ppc ppc64 sh sparc x86 ~amd64-fbsd 
~x86-fbsd ~x86-interix ~amd64-linux ~x86-linux ~sparc-solaris ~x86-solaris"
-IUSE="branding doc"
+IUSE="branding"
 
 SRC_URI="${SRC_URI}
branding? ( mirror://gentoo/gentoo-gdm-theme-r3.tar.bz2 )"
 
-RDEPEND=">=gnome-base/gconf-2
+RDEPEND="
+   >=gnome-base/gconf-2
>=dev-libs/glib-2.16:2
>=gnome-base/gnome-vfs-2.5.3
>=gnome-base/libbonobo-2.13
>=dev-libs/popt-1.7
-   media-libs/libcanberra"
-
+   media-libs/libcanberra
+"
 DEPEND="${RDEPEND}
>=dev-lang/perl-5
+   dev-util/gtk-doc-am
>=dev-util/intltool-0.40
virtual/pkgconfig
-   doc? ( >=dev-util/gtk-doc-1 )"
+"
 
 PDEPEND="gnome-base/gvfs"
 
-pkg_setup() {
-   G2CONF="${G2CONF}
-   --disable-static
-   --disable-schemas-install
-   --enable-canberra
-   --disable-esd"
-   DOCS="AUTHORS ChangeLog NEWS README"
-}
-
 src_prepare() {
-   gnome2_src_prepare
-
# Make sure menus have icons. People don't like change
epatch "${FILESDIR}/${PN}-2.28.0-menus-have-icons.patch"
 
@@ -55,8 +46,14 @@
# Default to Adwaita theme over Clearlooks to proper gtk3 support
sed -i -e 's/Clearlooks/Adwaita/' 
schemas/desktop_gnome_interface.schemas.in.in || die
 
-   # Drop DEPRECATED flags
-   sed -i -e 's:-D[A-Z_]*DISABLE_DEPRECATED:$(NULL):g' libgnome/Makefile.* 
|| die
+   gnome2_src_prepare
+}
+
+src_configure() {
+   gnome2_src_configure \
+   --disable-static \
+   --enable-canberra \
+   --disable-esd
 }
 
 src_install() {



1.223gnome-base/libgnome/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/ChangeLog?rev=1.223&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/ChangeLog?rev=1.223&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnome/ChangeLog?r1=1.222&r2=1.223

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/libgnome/ChangeLog,v
retrieving revision 1.222
retrieving revision 1.223
diff -u -r1.222 -r1.223
--- ChangeLog   29 Mar 2013 19:32:55 -  1.222
+++ ChangeLog   7 Jan 2015 20:01:30 -   1.223
@@ -1,6 +1,9 @@
 # ChangeLog for gnome-base/libgnome
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgnome/ChangeLog,v 1.222 
2013/03/29 19:32:55 eva Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgnome/ChangeLog,v 1.223 
2015/01/07 20:01:30 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  libgnome-2.32.1-r1.ebuild:
+  Update ebuild
 
   29 Mar 2013; Gilles Dartiguelongue  -libgnome-2.32.1.ebuild:
   Clean up old revision.
@@ -813,4 +816,3 @@
 *libgnome-1.117.0 (22 May 2002)
   22 May 2002; Spiderlibgnome-1.117.0.ebuild :
   part of gnome2 . initial cvs commit
-

[gentoo-commits] gentoo-x86 commit in gnome-base/libgtop: ChangeLog libgtop-2.28.5.ebuild libgtop-2.28.4.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:55:41

  Modified: ChangeLog
  Removed:  libgtop-2.28.5.ebuild libgtop-2.28.4.ebuild
  Log:
  Drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.279gnome-base/libgtop/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgtop/ChangeLog?rev=1.279&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgtop/ChangeLog?rev=1.279&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgtop/ChangeLog?r1=1.278&r2=1.279

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/libgtop/ChangeLog,v
retrieving revision 1.278
retrieving revision 1.279
diff -u -r1.278 -r1.279
--- ChangeLog   11 Oct 2014 12:13:51 -  1.278
+++ ChangeLog   7 Jan 2015 19:55:41 -   1.279
@@ -1,6 +1,10 @@
 # ChangeLog for gnome-base/libgtop
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgtop/ChangeLog,v 1.278 
2014/10/11 12:13:51 maekke Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgtop/ChangeLog,v 1.279 
2015/01/07 19:55:41 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  -libgtop-2.28.4.ebuild,
+  -libgtop-2.28.5.ebuild:
+  Drop old
 
   11 Oct 2014; Markus Meier  libgtop-2.30.0.ebuild:
   arm stable, bug #512012

[gentoo-commits] gentoo-x86 commit in app-text/libgxps: libgxps-0.2.2.ebuild metadata.xml ChangeLog

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:53:13

  Modified: libgxps-0.2.2.ebuild metadata.xml ChangeLog
  Log:
  Update ebuild
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.17 app-text/libgxps/libgxps-0.2.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild?rev=1.17&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild?rev=1.17&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild?r1=1.16&r2=1.17

Index: libgxps-0.2.2.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- libgxps-0.2.2.ebuild1 Apr 2013 18:23:34 -   1.16
+++ libgxps-0.2.2.ebuild7 Jan 2015 19:53:13 -   1.17
@@ -1,22 +1,23 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild,v 
1.16 2013/04/01 18:23:34 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-text/libgxps/libgxps-0.2.2.ebuild,v 
1.17 2015/01/07 19:53:13 pacho Exp $
 
-EAPI="4"
+EAPI="5"
 GNOME2_LA_PUNT="yes"
 GCONF_DEBUG="yes"
 
 inherit gnome2
 
 DESCRIPTION="Library for handling and rendering XPS documents"
-HOMEPAGE="http://live.gnome.org/libgxps";
+HOMEPAGE="https://wiki.gnome.org/Projects/libgxps";
 
 LICENSE="LGPL-2.1"
 SLOT="0"
 KEYWORDS="alpha amd64 arm ia64 ppc ppc64 sparc x86"
-IUSE="debug doc +introspection jpeg lcms static-libs tiff"
+IUSE="+introspection jpeg lcms static-libs tiff"
 
-RDEPEND=">=app-arch/libarchive-2.8
+RDEPEND="
+   >=app-arch/libarchive-2.8
>=dev-libs/glib-2.24:2
media-libs/freetype:2
media-libs/libpng:0
@@ -24,29 +25,25 @@
introspection? ( >=dev-libs/gobject-introspection-0.10.1 )
jpeg? ( virtual/jpeg )
lcms? ( media-libs/lcms:2 )
-   tiff? ( media-libs/tiff[zlib] )"
+   tiff? ( media-libs/tiff[zlib] )
+"
 DEPEND="${RDEPEND}
app-text/docbook-xsl-stylesheets
dev-libs/libxslt
+   dev-util/gtk-doc-am
virtual/pkgconfig
-   doc? (
-   app-text/docbook-xml-dtd:4.1.2
-   >=dev-util/gtk-doc-1.14 )"
-
-# eautoreconf requires: dev-util/gtk-doc-am
+"
 
 # There is no automatic test suite, only an interactive test application
 RESTRICT="test"
 
-pkg_setup() {
-   G2CONF="${G2CONF}
-   --enable-man
-   --disable-test
-   $(use_enable debug)
-   $(use_enable introspection)
-   $(use_with jpeg libjpeg)
-   $(use_with lcms liblcms2)
-   $(use_enable static-libs static)
-   $(use_with tiff libtiff)"
-   DOCS="AUTHORS ChangeLog NEWS README TODO"
+src_configure() {
+   gnome2_src_configure \
+   --enable-man \
+   --disable-test \
+   $(use_enable introspection) \
+   $(use_with jpeg libjpeg) \
+   $(use_with lcms liblcms2) \
+   $(use_enable static-libs static) \
+   $(use_with tiff libtiff)
 }



1.2  app-text/libgxps/metadata.xml

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/metadata.xml?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/metadata.xml?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/metadata.xml?r1=1.1&r2=1.2

Index: metadata.xml
===
RCS file: /var/cvsroot/gentoo-x86/app-text/libgxps/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml3 Nov 2011 05:10:47 -   1.1
+++ metadata.xml7 Jan 2015 19:53:13 -   1.2
@@ -2,8 +2,4 @@
 http://www.gentoo.org/dtd/metadata.dtd";>
 
 gnome
-
-  Use dev-libs/gobject-introspection
-for introspection
-
 



1.21 app-text/libgxps/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/ChangeLog?rev=1.21&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/ChangeLog?rev=1.21&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-text/libgxps/ChangeLog?r1=1.20&r2=1.21

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-text/libgxps/ChangeLog,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -r1.20 -r1.21
--- ChangeLog   1 Apr 2013 18:23:34 -   1.20
+++ ChangeLog   7 Jan 2015 19:53:13 -   1.21
@@ -1,6 +1,10 @@
 # ChangeLog fo

[gentoo-commits] proj/gentoo-keys:master commit in: /

2015-01-07 Thread Brian Dolbec

commit: a7a09e0bdb93356fdcb45e2e5bbd07502291db5d
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 19:40:21 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 19:40:21 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=a7a09e0b

gentoo-keys: Add the doc and py2man directories to testpath and .gitignore

---
 .gitignore | 6 ++
 testpath   | 5 +
 2 files changed, 11 insertions(+)

diff --git a/.gitignore b/.gitignore
index 7c82236..de7e39f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,3 +5,9 @@
 /gkeys-ldap/README.md
 /gkeys/LICENSE
 /gkeys/README.md
+/gkeys/py2man
+/gkeys-gen/py2man
+/gkeys-ldap/py2man
+/gkeys/doc
+/gkeys-gen/doc
+/gkeys-ldap/doc

diff --git a/testpath b/testpath
index 6064710..e05940a 100644
--- a/testpath
+++ b/testpath
@@ -30,3 +30,8 @@ ln LICENSE gkeys-ldap/LICENSE
 ln README.md gkeys/README.md
 ln README.md gkeys-gen/README.md
 ln README.md gkeys-ldap/README.md
+
+# Create the py2man symlinks for generating our man pages.
+ln -s py2man gkeys/py2man
+ln -s py2man gkeys-gen/py2man
+ln -s py2man gkeys-ldap/py2man

[gentoo-commits] proj/gentoo-keys:master commit in: gkeys/, gkeys-gen/

2015-01-07 Thread Brian Dolbec

commit: 41d9a206204150d6901eb1b74304eac08d1f96d0
Author: Brian Dolbec  gentoo  org>
AuthorDate: Wed Jan  7 19:39:26 2015 +
Commit: Brian Dolbec  gentoo  org>
CommitDate: Wed Jan  7 19:39:26 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=proj/gentoo-keys.git;a=commit;h=41d9a206

gkeys, gkeys-gen: Include py2man for sdist tarball creation

---
 gkeys-gen/MANIFEST.in | 1 +
 gkeys/MANIFEST.in | 1 +
 2 files changed, 2 insertions(+)

diff --git a/gkeys-gen/MANIFEST.in b/gkeys-gen/MANIFEST.in
index c1a7121..c0d51c9 100644
--- a/gkeys-gen/MANIFEST.in
+++ b/gkeys-gen/MANIFEST.in
@@ -1,2 +1,3 @@
 include LICENSE
 include README.md
+include py2man/*

diff --git a/gkeys/MANIFEST.in b/gkeys/MANIFEST.in
index c1a7121..c0d51c9 100644
--- a/gkeys/MANIFEST.in
+++ b/gkeys/MANIFEST.in
@@ -1,2 +1,3 @@
 include LICENSE
 include README.md
+include py2man/*

[gentoo-commits] gentoo-x86 commit in dev-python/gnome-python-desktop-base: ChangeLog gnome-python-desktop-base-2.32.0.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:34:26

  Modified: ChangeLog
  Removed:  gnome-python-desktop-base-2.32.0.ebuild
  Log:
  Drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.61 dev-python/gnome-python-desktop-base/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog?rev=1.61&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog?rev=1.61&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog?r1=1.60&r2=1.61

Index: ChangeLog
===
RCS file: 
/var/cvsroot/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog,v
retrieving revision 1.60
retrieving revision 1.61
diff -u -r1.60 -r1.61
--- ChangeLog   2 Jan 2015 12:09:07 -   1.60
+++ ChangeLog   7 Jan 2015 19:34:26 -   1.61
@@ -1,6 +1,10 @@
 # ChangeLog for dev-python/gnome-python-desktop-base
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: 
/var/cvsroot/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog,v 1.60 
2015/01/02 12:09:07 ago Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/dev-python/gnome-python-desktop-base/ChangeLog,v 1.61 
2015/01/07 19:34:26 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos 
+  -gnome-python-desktop-base-2.32.0.ebuild:
+  Drop old
 
   02 Jan 2015; Agostino Sarubbo 
   gnome-python-desktop-base-2.32.0-r1.ebuild:

[gentoo-commits] gentoo-x86 commit in gnome-base/libgnomeui: ChangeLog libgnomeui-2.24.5.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:33:23

  Modified: ChangeLog
  Removed:  libgnomeui-2.24.5.ebuild
  Log:
  Drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.223gnome-base/libgnomeui/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnomeui/ChangeLog?rev=1.223&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnomeui/ChangeLog?rev=1.223&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libgnomeui/ChangeLog?r1=1.222&r2=1.223

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/libgnomeui/ChangeLog,v
retrieving revision 1.222
retrieving revision 1.223
diff -u -r1.222 -r1.223
--- ChangeLog   2 Jan 2015 12:09:52 -   1.222
+++ ChangeLog   7 Jan 2015 19:33:23 -   1.223
@@ -1,6 +1,9 @@
 # ChangeLog for gnome-base/libgnomeui
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgnomeui/ChangeLog,v 1.222 
2015/01/02 12:09:52 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/libgnomeui/ChangeLog,v 1.223 
2015/01/07 19:33:23 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  -libgnomeui-2.24.5.ebuild:
+  Drop old
 
   02 Jan 2015; Agostino Sarubbo  libgnomeui-2.24.5-r1.ebuild:
   Stable for alpha, wrt bug #529964

[gentoo-commits] gentoo-x86 commit in gnome-base/libbonoboui: ChangeLog libbonoboui-2.24.5.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:32:39

  Modified: ChangeLog
  Removed:  libbonoboui-2.24.5.ebuild
  Log:
  Drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.229gnome-base/libbonoboui/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonoboui/ChangeLog?rev=1.229&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonoboui/ChangeLog?rev=1.229&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonoboui/ChangeLog?r1=1.228&r2=1.229

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/libbonoboui/ChangeLog,v
retrieving revision 1.228
retrieving revision 1.229
diff -u -r1.228 -r1.229
--- ChangeLog   2 Jan 2015 12:09:45 -   1.228
+++ ChangeLog   7 Jan 2015 19:32:39 -   1.229
@@ -1,6 +1,9 @@
 # ChangeLog for gnome-base/libbonoboui
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/libbonoboui/ChangeLog,v 1.228 
2015/01/02 12:09:45 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/libbonoboui/ChangeLog,v 1.229 
2015/01/07 19:32:39 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  -libbonoboui-2.24.5.ebuild:
+  Drop old
 
   02 Jan 2015; Agostino Sarubbo  libbonoboui-2.24.5-r1.ebuild:
   Stable for alpha, wrt bug #529964

[gentoo-commits] gentoo-x86 commit in gnome-base/libbonobo: ChangeLog libbonobo-2.24.3.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:32:02

  Modified: ChangeLog
  Removed:  libbonobo-2.24.3.ebuild
  Log:
  Drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.212gnome-base/libbonobo/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonobo/ChangeLog?rev=1.212&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonobo/ChangeLog?rev=1.212&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-base/libbonobo/ChangeLog?r1=1.211&r2=1.212

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-base/libbonobo/ChangeLog,v
retrieving revision 1.211
retrieving revision 1.212
diff -u -r1.211 -r1.212
--- ChangeLog   2 Jan 2015 12:09:41 -   1.211
+++ ChangeLog   7 Jan 2015 19:32:02 -   1.212
@@ -1,6 +1,9 @@
 # ChangeLog for gnome-base/libbonobo
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-base/libbonobo/ChangeLog,v 1.211 
2015/01/02 12:09:41 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/gnome-base/libbonobo/ChangeLog,v 1.212 
2015/01/07 19:32:02 pacho Exp $
+
+  07 Jan 2015; Pacho Ramos  -libbonobo-2.24.3.ebuild:
+  Drop old
 
   02 Jan 2015; Agostino Sarubbo  libbonobo-2.24.3-r1.ebuild:
   Stable for alpha, wrt bug #529964

[gentoo-commits] gentoo-x86 commit in media-gfx/truevision/files: truevision-0.5.5.2-gcc43.patch truevision-0.5.5.2-makefile-mime-magic.patch

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:30:23

  Removed:  truevision-0.5.5.2-gcc43.patch
truevision-0.5.5.2-makefile-mime-magic.patch
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in profiles: package.mask

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:30:10

  Modified: package.mask
  Log:
  Package cleaned

Revision  ChangesPath
1.16274  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16274&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16274&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16273&r2=1.16274

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16273
retrieving revision 1.16274
diff -u -r1.16273 -r1.16274
--- package.mask7 Jan 2015 19:28:54 -   1.16273
+++ package.mask7 Jan 2015 19:30:10 -   1.16274
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16273 2015/01/07 
19:28:54 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16274 2015/01/07 
19:30:10 pacho Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -296,10 +296,6 @@
 sys-firmware/iwl5150-ucode
 
 # Pacho Ramos  (01 Dec 2014)
-# Unbuildable, dead since 2005 (#526184)
-media-gfx/truevision
-
-# Pacho Ramos  (01 Dec 2014)
 # Relies on old gnome-bluetooth and upstream is not going
 # to fix it anytime soon (#528916). Removal in a month.
 net-wireless/cinnamon-bluetooth

[gentoo-commits] gentoo-x86 commit in media-gfx/truevision: ChangeLog Manifest metadata.xml truevision-0.5.5.2.ebuild

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:30:23

  Removed:  ChangeLog Manifest metadata.xml
truevision-0.5.5.2.ebuild
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in profiles: package.mask

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:28:54

  Modified: package.mask
  Log:
  Package cleaned

Revision  ChangesPath
1.16273  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16273&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16273&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16272&r2=1.16273

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16272
retrieving revision 1.16273
diff -u -r1.16272 -r1.16273
--- package.mask7 Jan 2015 19:27:58 -   1.16272
+++ package.mask7 Jan 2015 19:28:54 -   1.16273
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16272 2015/01/07 
19:27:58 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16273 2015/01/07 
19:28:54 pacho Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -300,11 +300,6 @@
 media-gfx/truevision
 
 # Pacho Ramos  (01 Dec 2014)
-# Dead for 4 years, relies on obsolete lcms, bundles
-# a lot of libs. Removal in a month (#526818)
-media-gfx/f-spot
-
-# Pacho Ramos  (01 Dec 2014)
 # Relies on old gnome-bluetooth and upstream is not going
 # to fix it anytime soon (#528916). Removal in a month.
 net-wireless/cinnamon-bluetooth

[gentoo-commits] gentoo-x86 commit in media-gfx/f-spot: ChangeLog Manifest f-spot-0.8.2.ebuild metadata.xml

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:28:40

  Removed:  ChangeLog Manifest f-spot-0.8.2.ebuild metadata.xml
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in media-gfx/f-spot/files: f-spot-0.8.1-mono2.8.patch

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:28:40

  Removed:  f-spot-0.8.1-mono2.8.patch
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in profiles: package.mask

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:27:58

  Modified: package.mask
  Log:
  Package cleaned

Revision  ChangesPath
1.16272  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16272&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16272&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16271&r2=1.16272

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16271
retrieving revision 1.16272
diff -u -r1.16271 -r1.16272
--- package.mask7 Jan 2015 19:26:22 -   1.16271
+++ package.mask7 Jan 2015 19:27:58 -   1.16272
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16271 2015/01/07 
19:26:22 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16272 2015/01/07 
19:27:58 pacho Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -220,11 +220,6 @@
 net-analyzer/openvas-administrator
 
 # Pacho Ramos  (01 Dec 2014)
-# Doesn't work ok, upstream dead since 2007 (#321277).
-# Removal in a month.
-net-im/linpopup
-
-# Pacho Ramos  (01 Dec 2014)
 # Multiple pending bugs, #380435, #460508, #481150,
 # #481310, #481312, #530856. Removal in a month (#380435)
 app-office/teapot

[gentoo-commits] gentoo-x86 commit in net-im/linpopup/files: 2.0.4-link.patch 2.0.4-overflow.patch 2.1.0-link.patch

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:27:35

  Removed:  2.0.4-link.patch 2.0.4-overflow.patch
2.1.0-link.patch
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in net-im/linpopup: ChangeLog Manifest linpopup-2.0.4-r1.ebuild linpopup-2.1.0.ebuild metadata.xml

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:27:35

  Removed:  ChangeLog Manifest linpopup-2.0.4-r1.ebuild
linpopup-2.1.0.ebuild metadata.xml
  Log:
  Package cleaned

[gentoo-commits] gentoo-x86 commit in profiles: package.mask

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:26:22

  Modified: package.mask
  Log:
  Package cleaned

Revision  ChangesPath
1.16271  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16271&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16271&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16270&r2=1.16271

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16270
retrieving revision 1.16271
diff -u -r1.16270 -r1.16271
--- package.mask7 Jan 2015 16:36:16 -   1.16270
+++ package.mask7 Jan 2015 19:26:22 -   1.16271
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16270 2015/01/07 
16:36:16 floppym Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16271 2015/01/07 
19:26:22 pacho Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -315,11 +315,6 @@
 net-wireless/cinnamon-bluetooth
 
 # Pacho Ramos  (01 Dec 2014)
-# Tends to crash a lot, upstream dead (#530126).
-# Removal in a month.
-app-misc/cdcollect
-
-# Pacho Ramos  (01 Dec 2014)
 # No updates since 2009, doesn't build (#531110).
 # Removal in a month.
 net-wireless/ussp-push

[gentoo-commits] gentoo-x86 commit in app-misc/cdcollect: ChangeLog Manifest cdcollect-0.6.0-r1.ebuild cdcollect-0.6.0.ebuild metadata.xml

2015-01-07 Thread Pacho Ramos (pacho)

pacho   15/01/07 19:25:33

  Removed:  ChangeLog Manifest cdcollect-0.6.0-r1.ebuild
cdcollect-0.6.0.ebuild metadata.xml
  Log:
  Clean masked for removal package

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