Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
My current Gromacs version is 4.5.5 I think using the first option will be easy and quick. On Wed, Jun 12, 2013 at 4:41 PM, Erik Marklund wrote: > You have (at least) two easy options. > > 1) Install old_dssp that is available through the dssp web page. > 2) Install a newer version of gromacs than you have at the moment. What > version do you currently use? > > Erik > > On 12 Jun 2013, at 12:56, Nikunj Maheshwari > wrote: > > > Yes I checked. do_dssp has no -ver option. > > I also found out this link > > > > https://gerrit.gromacs.org/#/c/687/ > > > > but dont know how to install/use it. > > > > Or maybe I can install DsspOld and see? > > > > > > > > On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund > wrote: > > > >> Search again. The syntax for invoking dssp changed at some point and it > >> took a while before do_dssp adapted to that. If your do_dssp is lacking > the > >> -ver option then I'm quite confident that it uses the old syntax, which > >> doesn't work with the newer versions (v. 2.0+ I think) of dssp. > >> > >> Erik > >> > >> On 12 Jun 2013, at 11:17, Nikunj Maheshwari > >> wrote: > >> > >>> Yes I did searched. But for most people, there were issues regarding > the > >>> path or wrong DSSP. > >>> DSSP runs for me, but do_dssp does not. > >>> > >>> > >>> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund > >> wrote: > >>> > Hi, > > Search the mailing list. This problem and its solution has been > >> repeatedly > discussed. > > Erik > > On 12 Jun 2013, at 10:31, Nikunj Maheshwari > > wrote: > > > Dear all, > > > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > > I am trying to use it for do_dssp command but get the following error > each > > time: > > > > "Fatal error: > > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > > > /dev/null 2> /dev/null > > " > > > > Is there any way to rectify it? > > > > Thanks. > > Nikunj > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > >>> -- > >>> gmx-users mailing listgmx-users@gromacs.org > >>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> * Please don't post (un)subscribe requests to the list. Use the > >>> www interface or send it to gmx-users-requ...@gromacs.org. > >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> -- > >> gmx-users mailing listgmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> * Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.g
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
You have (at least) two easy options. 1) Install old_dssp that is available through the dssp web page. 2) Install a newer version of gromacs than you have at the moment. What version do you currently use? Erik On 12 Jun 2013, at 12:56, Nikunj Maheshwari wrote: > Yes I checked. do_dssp has no -ver option. > I also found out this link > > https://gerrit.gromacs.org/#/c/687/ > > but dont know how to install/use it. > > Or maybe I can install DsspOld and see? > > > > On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund wrote: > >> Search again. The syntax for invoking dssp changed at some point and it >> took a while before do_dssp adapted to that. If your do_dssp is lacking the >> -ver option then I'm quite confident that it uses the old syntax, which >> doesn't work with the newer versions (v. 2.0+ I think) of dssp. >> >> Erik >> >> On 12 Jun 2013, at 11:17, Nikunj Maheshwari >> wrote: >> >>> Yes I did searched. But for most people, there were issues regarding the >>> path or wrong DSSP. >>> DSSP runs for me, but do_dssp does not. >>> >>> >>> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund >> wrote: >>> Hi, Search the mailing list. This problem and its solution has been >> repeatedly discussed. Erik On 12 Jun 2013, at 10:31, Nikunj Maheshwari wrote: > Dear all, > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > I am trying to use it for do_dssp command but get the following error each > time: > > "Fatal error: > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > /dev/null 2> /dev/null > " > > Is there any way to rectify it? > > Thanks. > Nikunj > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> -- >>> gmx-users mailing listgmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> -- >> gmx-users mailing listgmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
Yes I checked. do_dssp has no -ver option. I also found out this link https://gerrit.gromacs.org/#/c/687/ but dont know how to install/use it. Or maybe I can install DsspOld and see? On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund wrote: > Search again. The syntax for invoking dssp changed at some point and it > took a while before do_dssp adapted to that. If your do_dssp is lacking the > -ver option then I'm quite confident that it uses the old syntax, which > doesn't work with the newer versions (v. 2.0+ I think) of dssp. > > Erik > > On 12 Jun 2013, at 11:17, Nikunj Maheshwari > wrote: > > > Yes I did searched. But for most people, there were issues regarding the > > path or wrong DSSP. > > DSSP runs for me, but do_dssp does not. > > > > > > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund > wrote: > > > >> Hi, > >> > >> Search the mailing list. This problem and its solution has been > repeatedly > >> discussed. > >> > >> Erik > >> > >> On 12 Jun 2013, at 10:31, Nikunj Maheshwari > >> wrote: > >> > >>> Dear all, > >>> > >>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > >>> I am trying to use it for do_dssp command but get the following error > >> each > >>> time: > >>> > >>> "Fatal error: > >>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > >>> /dev/null 2> /dev/null > >>> " > >>> > >>> Is there any way to rectify it? > >>> > >>> Thanks. > >>> Nikunj > >>> -- > >>> gmx-users mailing listgmx-users@gromacs.org > >>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> * Please don't post (un)subscribe requests to the list. Use the > >>> www interface or send it to gmx-users-requ...@gromacs.org. > >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> -- > >> gmx-users mailing listgmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> * Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
Search again. The syntax for invoking dssp changed at some point and it took a while before do_dssp adapted to that. If your do_dssp is lacking the -ver option then I'm quite confident that it uses the old syntax, which doesn't work with the newer versions (v. 2.0+ I think) of dssp. Erik On 12 Jun 2013, at 11:17, Nikunj Maheshwari wrote: > Yes I did searched. But for most people, there were issues regarding the > path or wrong DSSP. > DSSP runs for me, but do_dssp does not. > > > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund wrote: > >> Hi, >> >> Search the mailing list. This problem and its solution has been repeatedly >> discussed. >> >> Erik >> >> On 12 Jun 2013, at 10:31, Nikunj Maheshwari >> wrote: >> >>> Dear all, >>> >>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. >>> I am trying to use it for do_dssp command but get the following error >> each >>> time: >>> >>> "Fatal error: >>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > >>> /dev/null 2> /dev/null >>> " >>> >>> Is there any way to rectify it? >>> >>> Thanks. >>> Nikunj >>> -- >>> gmx-users mailing listgmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> -- >> gmx-users mailing listgmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
The location of dssp is /usr/local/bin/dssp On Wed, Jun 12, 2013 at 3:43 PM, Mark Abraham wrote: > Right. And what is its location? > On Jun 12, 2013 11:17 AM, "Nikunj Maheshwari" > wrote: > > > Yes I did searched. But for most people, there were issues regarding the > > path or wrong DSSP. > > DSSP runs for me, but do_dssp does not. > > > > > > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund > > wrote: > > > > > Hi, > > > > > > Search the mailing list. This problem and its solution has been > > repeatedly > > > discussed. > > > > > > Erik > > > > > > On 12 Jun 2013, at 10:31, Nikunj Maheshwari > > > wrote: > > > > > > > Dear all, > > > > > > > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > > > > I am trying to use it for do_dssp command but get the following error > > > each > > > > time: > > > > > > > > "Fatal error: > > > > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > > > > > /dev/null 2> /dev/null > > > > " > > > > > > > > Is there any way to rectify it? > > > > > > > > Thanks. > > > > Nikunj > > > > -- > > > > gmx-users mailing listgmx-users@gromacs.org > > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > > > * Please don't post (un)subscribe requests to the list. Use the > > > > www interface or send it to gmx-users-requ...@gromacs.org. > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > -- > > > gmx-users mailing listgmx-users@gromacs.org > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > > * Please don't post (un)subscribe requests to the list. Use the > > > www interface or send it to gmx-users-requ...@gromacs.org. > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
Right. And what is its location? On Jun 12, 2013 11:17 AM, "Nikunj Maheshwari" wrote: > Yes I did searched. But for most people, there were issues regarding the > path or wrong DSSP. > DSSP runs for me, but do_dssp does not. > > > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund > wrote: > > > Hi, > > > > Search the mailing list. This problem and its solution has been > repeatedly > > discussed. > > > > Erik > > > > On 12 Jun 2013, at 10:31, Nikunj Maheshwari > > wrote: > > > > > Dear all, > > > > > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > > > I am trying to use it for do_dssp command but get the following error > > each > > > time: > > > > > > "Fatal error: > > > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > > > /dev/null 2> /dev/null > > > " > > > > > > Is there any way to rectify it? > > > > > > Thanks. > > > Nikunj > > > -- > > > gmx-users mailing listgmx-users@gromacs.org > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > > * Please don't post (un)subscribe requests to the list. Use the > > > www interface or send it to gmx-users-requ...@gromacs.org. > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
Yes I did searched. But for most people, there were issues regarding the path or wrong DSSP. DSSP runs for me, but do_dssp does not. On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund wrote: > Hi, > > Search the mailing list. This problem and its solution has been repeatedly > discussed. > > Erik > > On 12 Jun 2013, at 10:31, Nikunj Maheshwari > wrote: > > > Dear all, > > > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > > I am trying to use it for do_dssp command but get the following error > each > > time: > > > > "Fatal error: > > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > > /dev/null 2> /dev/null > > " > > > > Is there any way to rectify it? > > > > Thanks. > > Nikunj > > -- > > gmx-users mailing listgmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] dssp works fine, but do_dssp gives fatal error
Hi, Search the mailing list. This problem and its solution has been repeatedly discussed. Erik On 12 Jun 2013, at 10:31, Nikunj Maheshwari wrote: > Dear all, > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > I am trying to use it for do_dssp command but get the following error each > time: > > "Fatal error: > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > /dev/null 2> /dev/null > " > > Is there any way to rectify it? > > Thanks. > Nikunj > -- > gmx-users mailing listgmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
[gmx-users] dssp works fine, but do_dssp gives fatal error
Dear all, I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. I am trying to use it for do_dssp command but get the following error each time: "Fatal error: Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > /dev/null 2> /dev/null " Is there any way to rectify it? Thanks. Nikunj -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
