Re: [R] SPSS R Factor v2.4.2

[Uwe Ligges]

Actually there is also a Windows binary:

https://cran.r-project.org/bin/windows/contrib/3.2/polycor_0.7-8.zip

hence installing with install.packages("polycor") should work *if* you 
choose a http (not https) mirror. The latter was not possible in R-3.2.0 
which probably is what you are taking about.


Best,
Uwe Ligges



On 06.08.2017 07:08, David Winsemius wrote:



On Aug 5, 2017, at 7:02 PM, Gavin Brown  wrote:

I am not an R-Head, hence I use nice utilities that integrate R into SPSS
I have SPSS v24, R3.20 and R3.40
I have run IBM SPSS R Integration which requires linking to R3.20
I have installed R Factor v2.4.2



This package requires 'polycor' library
Unfortunately, 'polycor' does not exist in R3.20


That's not really correct. There is an archived version that should be 
compatible with your out-of-date version of R. See:

ftp://cran.r-project.org/pub/R/src/contrib/Archive/polycor/

Good luck;
David.



DATASET ACTIVATE DataSet1.
*M�rio Basto, Jos� Manuel Pereira, IPCA
*Required: SPSS 21 and R Integration Plugin
*R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS, 
R.utils.
set printback off.
Error in library(polycor) : there is no package called 'polycor'

This means the very good utility does not run in the way I have installed both 
R and SPSS
Does anyone know what I've done wrong and how to overcome this?

Prof. Gavin T L Brown, PhD
Director Quantitative Data Analysis and Research Unit
Faculty of Education & Social Work
The University of Auckland
Tel: +64 9 3737599 ext. 48602
Mob: +64 22 108 7253
Honorary Professor, Dept. of Curriculum & Instruction, Education University of 
Hong Kong
Affiliated Professor, Dept. of Applied Educational Sciences, University of 
Umea, Sweden

New:  
https://www.routledge.com/Assessment-of-Student-Achievement/Brown/p/book/9781138061866


[[alternative HTML version deleted]]

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Re: [R] SPSS R Factor v2.4.2

[David Winsemius]

> On Aug 5, 2017, at 7:02 PM, Gavin Brown  wrote:
> 
> I am not an R-Head, hence I use nice utilities that integrate R into SPSS
> I have SPSS v24, R3.20 and R3.40
> I have run IBM SPSS R Integration which requires linking to R3.20
> I have installed R Factor v2.4.2

> This package requires 'polycor' library
> Unfortunately, 'polycor' does not exist in R3.20

That's not really correct. There is an archived version that should be 
compatible with your out-of-date version of R. See:

ftp://cran.r-project.org/pub/R/src/contrib/Archive/polycor/

Good luck;
David.

> 
> DATASET ACTIVATE DataSet1.
> *M�rio Basto, Jos� Manuel Pereira, IPCA
> *Required: SPSS 21 and R Integration Plugin
> *R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS, 
> R.utils.
> set printback off.
> Error in library(polycor) : there is no package called 'polycor'
> 
> This means the very good utility does not run in the way I have installed 
> both R and SPSS
> Does anyone know what I've done wrong and how to overcome this?
> 
> Prof. Gavin T L Brown, PhD
> Director Quantitative Data Analysis and Research Unit
> Faculty of Education & Social Work
> The University of Auckland
> Tel: +64 9 3737599 ext. 48602
> Mob: +64 22 108 7253
> Honorary Professor, Dept. of Curriculum & Instruction, Education University 
> of Hong Kong
> Affiliated Professor, Dept. of Applied Educational Sciences, University of 
> Umea, Sweden
> 
> New:  
> https://www.routledge.com/Assessment-of-Student-Achievement/Brown/p/book/9781138061866
> 
> 
>   [[alternative HTML version deleted]]
> 
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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Re: [R] SPSS R Factor v2.4.2

[Bert Gunter]

Well, you could download and install it into R!

https://cran.r-project.org/web/packages/polycor/index.html

However, as this seems to be about how SPSS integrates R, maybe you
should post on their support list for help.

Cheers,
Bert



Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Sat, Aug 5, 2017 at 7:02 PM, Gavin Brown  wrote:
> I am not an R-Head, hence I use nice utilities that integrate R into SPSS
> I have SPSS v24, R3.20 and R3.40
> I have run IBM SPSS R Integration which requires linking to R3.20
> I have installed R Factor v2.4.2
> This package requires 'polycor' library
> Unfortunately, 'polycor' does not exist in R3.20
>
> DATASET ACTIVATE DataSet1.
> *Mário Basto, José Manuel Pereira, IPCA
> *Required: SPSS 21 and R Integration Plugin
> *R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS, 
> R.utils.
> set printback off.
> Error in library(polycor) : there is no package called 'polycor'
>
> This means the very good utility does not run in the way I have installed 
> both R and SPSS
> Does anyone know what I've done wrong and how to overcome this?
>
> Prof. Gavin T L Brown, PhD
> Director Quantitative Data Analysis and Research Unit
> Faculty of Education & Social Work
> The University of Auckland
> Tel: +64 9 3737599 ext. 48602
> Mob: +64 22 108 7253
> Honorary Professor, Dept. of Curriculum & Instruction, Education University 
> of Hong Kong
> Affiliated Professor, Dept. of Applied Educational Sciences, University of 
> Umea, Sweden
>
> New:  
> https://www.routledge.com/Assessment-of-Student-Achievement/Brown/p/book/9781138061866
>
>
> [[alternative HTML version deleted]]
>
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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[R] SPSS R Factor v2.4.2

[Gavin Brown]

I am not an R-Head, hence I use nice utilities that integrate R into SPSS
I have SPSS v24, R3.20 and R3.40
I have run IBM SPSS R Integration which requires linking to R3.20
I have installed R Factor v2.4.2
This package requires 'polycor' library
Unfortunately, 'polycor' does not exist in R3.20

DATASET ACTIVATE DataSet1.
*M�rio Basto, Jos� Manuel Pereira, IPCA
*Required: SPSS 21 and R Integration Plugin
*R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS, 
R.utils.
set printback off.
Error in library(polycor) : there is no package called 'polycor'

This means the very good utility does not run in the way I have installed both 
R and SPSS
Does anyone know what I've done wrong and how to overcome this?

Prof. Gavin T L Brown, PhD
Director Quantitative Data Analysis and Research Unit
Faculty of Education & Social Work
The University of Auckland
Tel: +64 9 3737599 ext. 48602
Mob: +64 22 108 7253
Honorary Professor, Dept. of Curriculum & Instruction, Education University of 
Hong Kong
Affiliated Professor, Dept. of Applied Educational Sciences, University of 
Umea, Sweden

New:  
https://www.routledge.com/Assessment-of-Student-Achievement/Brown/p/book/9781138061866


[[alternative HTML version deleted]]

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and provide commented, minimal, self-contained, reproducible code.

[R] SPSS R-Menu for Ordinal Factor Analysis

[Till Below]

Dear all,

I am trying to conduct an enhanced version of factor analysis with a 
SPSS interface that allows to use R. This approach has been suggested in 
the recent article:


Basto, M. and J.M. Pereira  An SPSS R-Menu for Ordinal Factor Analysis. 
Journal of Statistical Software 46, pp. 1-29.


My variables are ordinal-type and the tool of Basto allows to run 
polychoric correlations in the SPSS environment with the R essentials 
ans Plugin.


I used R 2.10 version for spss 20 (I only have access to spss 20). I 
loaded the required packages. When running the factor analysis in spss 
with the plugin I receive the error message posted below. Aparently, the 
tool of Basto runs only with spss 19. Since the packages and the plugin 
are installed I think it must be a problem of the spss version.


Could someone suggest me a solution for the problem? I am not familiar 
with R, and so I would prefer to run the factor analysis in spss. Is 
there any possebility to run it with spss V. 20?


Best regards and compliments for your work,

Till Below (PhD student, Humboldt Universität zu Berlin, Germany)


SPSS output with error message:

GET
  FILE='C:\X.
DATASET NAME DatenSet1 WINDOW=FRONT.
DATASET ACTIVATE DatenSet1.
SAVE OUTFILE='C:\XX
 /COMPRESSED.
*Mário Basto, José Manuel Pereira, IPCA
*Required: SPSS 19 and R Integration Plugin
*R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS.
set printback off.










--
Till Below (PhD Student)

Humboldt-Universität zu Berlin

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Re: [R] SPSS R-Menu for Ordinal Factor Analysis

[Duncan Murdoch]

On 26/03/2012 7:32 AM, Till Below wrote:

Dear all,

I am trying to conduct an enhanced version of factor analysis with a
SPSS interface that allows to use R. This approach has been suggested in
the recent article:

Basto, M. and J.M. Pereira  An SPSS R-Menu for Ordinal Factor Analysis.
Journal of Statistical Software 46, pp. 1-29.

My variables are ordinal-type and the tool of Basto allows to run
polychoric correlations in the SPSS environment with the R essentials
ans Plugin.

I used R 2.10 version for spss 20 (I only have access to spss 20). I
loaded the required packages. When running the factor analysis in spss
with the plugin I receive the error message posted below. Aparently, the
tool of Basto runs only with spss 19. Since the packages and the plugin
are installed I think it must be a problem of the spss version.

Could someone suggest me a solution for the problem? I am not familiar
with R, and so I would prefer to run the factor analysis in spss. Is
there any possebility to run it with spss V. 20?


I think you will need to ask this question in an SPSS help forum:

 - Version 2.10.x of R is quite old, and is no longer supported.
 - The error message is coming from SPSS, not R

Duncan Murdoch


Best regards and compliments for your work,

Till Below (PhD student, Humboldt Universität zu Berlin, Germany)


SPSS output with error message:

GET
FILE='C:\X.
DATASET NAME DatenSet1 WINDOW=FRONT.
DATASET ACTIVATE DatenSet1.
SAVE OUTFILE='C:\XX
   /COMPRESSED.
*Mário Basto, José Manuel Pereira, IPCA
*Required: SPSS 19 and R Integration Plugin
*R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS.
set printback off.












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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Re: [R] SPSS R-Menu for Ordinal Factor Analysis

[peter dalgaard]

On Mar 26, 2012, at 16:31 , Duncan Murdoch wrote:

 I think you will need to ask this question in an SPSS help forum:
 
 - Version 2.10.x of R is quite old, and is no longer supported.
 - The error message is coming from SPSS, not R

and actually, it doesn't look like an error message at all, rather like a piece 
of an SPSS syntax file.


-- 
Peter Dalgaard, Professor
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Email: pd@cbs.dk  Priv: pda...@gmail.com

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Re: [R] SPSS R-Menu for Ordinal Factor Analysis

[Eik Vettorazzi]

Hi Till,
you need a plug-in for SPSS to run R, which is bound to a fixed R
version. SPSS 19 uses R2.10 and SPSS 20 uses R2.12 (both not up-to-date
R versions). So you have to download this plugin (after registering on
IBM Support) for your spss version and the according R version - or
start with a brand new R2.14 ;)
Cheers.


Am 26.03.2012 13:32, schrieb Till Below:
 Dear all,
 
 I am trying to conduct an enhanced version of factor analysis with a
 SPSS interface that allows to use R. This approach has been suggested in
 the recent article:
 
 Basto, M. and J.M. Pereira  An SPSS R-Menu for Ordinal Factor Analysis.
 Journal of Statistical Software 46, pp. 1-29.
 
 My variables are ordinal-type and the tool of Basto allows to run
 polychoric correlations in the SPSS environment with the R essentials
 ans Plugin.
 
 I used R 2.10 version for spss 20 (I only have access to spss 20). I
 loaded the required packages. When running the factor analysis in spss
 with the plugin I receive the error message posted below. Aparently, the
 tool of Basto runs only with spss 19. Since the packages and the plugin
 are installed I think it must be a problem of the spss version.
 
 Could someone suggest me a solution for the problem? I am not familiar
 with R, and so I would prefer to run the factor analysis in spss. Is
 there any possebility to run it with spss V. 20?
 
 Best regards and compliments for your work,
 
 Till Below (PhD student, Humboldt Universität zu Berlin, Germany)
 
 
 SPSS output with error message:
 
 GET
   FILE='C:\X.
 DATASET NAME DatenSet1 WINDOW=FRONT.
 DATASET ACTIVATE DatenSet1.
 SAVE OUTFILE='C:\XX
  /COMPRESSED.
 *Mário Basto, José Manuel Pereira, IPCA
 *Required: SPSS 19 and R Integration Plugin
 *R Packages required: psych, polycor, GPArotation, nFactors, corpcor, ICS.
 set printback off.
 
 
 
 
 
 
 
 
 
 


-- 
Eik Vettorazzi

Department of Medical Biometry and Epidemiology
University Medical Center Hamburg-Eppendorf

Martinistr. 52
20246 Hamburg

T ++49/40/7410-58243
F ++49/40/7410-57790

--
Pflichtangaben gemäß Gesetz über elektronische Handelsregister und 
Genossenschaftsregister sowie das Unternehmensregister (EHUG):

Universitätsklinikum Hamburg-Eppendorf; Körperschaft des öffentlichen Rechts; 
Gerichtsstand: Hamburg

Vorstandsmitglieder: Prof. Dr. Guido Sauter (Vertreter des Vorsitzenden), Dr. 
Alexander Kirstein, Joachim Prölß, Prof. Dr. Dr. Uwe Koch-Gromus 

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Re: [R] SPSS - R

[Yvonnick Noel]

Dear Kristi,

Also. can anyone recommend any resources to help SPSS users learn to things in 
R?


You may want to have a look at the R2STATS package, a simple GUI for 
linear models.


Best,

Yvonnick Noel
University of Brittany
Department of Psychology
Rennes, France

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Re: [R] SPSS - R

[Michael Dewey]

At 16:41 27/11/2011, Kristi Shoemaker wrote:

Hi John,

Your assumptions are correct and those examples were very helpful, thanks!

I think I'm almost there, but I'm screwing up something with the 
within-subjects factor (the example has two, I only have one). See 
below. Why am I not seeing my within-subjects factors in the ANOVA report?


I am by no means an expert in this but my reading of the 
documentation suggests that the idata and idesign parameters are for 
multivariate models and that is not what you specified.





 Dat2
   Subj  Age Sex Time   HippV
1   s01 32.9   1   0w 6.50098
2   s01 32.9   1   6w 6.91793
3   s02 35.1   0   0w 7.32480
4   s02 35.1   0   6w 7.56012
5   s03 34.4   0   0w 6.51385
6   s03 34.4   0   6w 6.56875
9   s05 39.9   1   0w 6.92855
10  s05 39.9   1   6w 6.94926
11  s06 29.5   1   0w 6.99383
12  s06 29.5   1   6w 7.10568
13  s07 45.9   1   0w 6.94380
14  s07 45.9   1   6w 7.08190
15  s08 20.3   1   0w 7.76881
16  s08 20.3   1   6w 7.72725
17  s09 26.9   0   0w 5.37566
18  s09 26.9   0   6w 5.74887
21  s11 22.0   0   0w 7.12992
22  s11 22.0   0   6w 7.16237
23  s12 31.0   1   0w 6.70629
24  s12 31.0   1   6w 6.80872
25  s13 50.1   1   0w 7.22649
26  s13 50.1   1   6w 7.58900
27  s14 22.2   0   0w 5.97577
28  s14 22.2   0   6w 5.80801
29  s16 20.4   1   0w 7.99554
30  s16 20.4   1   6w 8.09260
31  s20 24.0   0   0w 7.01014
32  s20 24.0   0   6w 6.87821
33  s21 32.4   0   0w 5.90883
34  s21 32.4   0   6w 5.95392
37  s24 22.2   0   0w 6.15474
38  s24 22.2   0   6w 6.00906
41  s27 22.2   1   0w 7.88765
42  s27 22.2   1   6w 7.76038
49  s35 24.3   0   0w 6.05998
50  s35 24.3   0   6w 6.07399
51  s36 23.5   0   0w 7.83182
52  s36 23.5   0   6w 7.60268
53  s38 59.7   1   0w 7.39672
54  s38 59.7   1   6w 6.98291
55  s39 40.5   0   0w 7.31330
56  s39 40.5   0   6w 7.50559
57  s40 24.2   1   0w 8.54958
58  s40 24.2   1   6w 8.65016
59  s41 23.6   1   0w 7.76049
60  s41 23.6   1   6w 7.58946
61  s42 53.3   0   0w 7.03388
62  s42 53.3   0   6w 7.48384
63  s43 34.4   0   0w 6.86967
64  s43 34.4   0   6w 6.81076
65  s44 44.8   0   0w 7.33779
66  s44 44.8   0   6w 7.86175
67  s45 40.2   1   0w 6.55963
68  s45 40.2   1   6w 6.52577
71  s47 26.5   0   0w 7.09418
72  s47 26.5   0   6w 6.92850
73  s48 22.7   0   0w 6.77078
74  s48 22.7   0   6w 6.67289
75  s50 36.1   1   0w 7.47208
76  s50 36.1   1   6w 7.55876
 library(car)
Loading required package: MASS
Loading required package: nnet
Loading required package: survival
Loading required package: splines
 timepoints - factor(c(0w, 6w),
+ levels=c(0w,6w))
 idata=data.frame(timepoints)
 mod.ok - lm(HippV ~ Age*Sex,data=Dat2)
 (av.ok - Anova(mod.ok, idata=idata, idesign=~timepoints))
Anova Table (Type II tests)

Response: HippV
   Sum Sq Df F valuePr(F)
Age0.0234  1   0.071 0.7909202
Sex5.3082  1  16.128 0.0001781 ***
Age:Sex4.7772  1  14.514 0.0003478 ***
Residuals 18.4314 56
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1





 From: John Fox j...@mcmaster.ca

Cc: r-help@r-project.org
Sent: Saturday, November 26, 2011 7:19 PM
Subject: RE: [R] SPSS - R

Dear Kristi,

I assume that this is a repeated-measures ANOVA with one within-subjects
factor (Time) and two between-subjects factors (Age and Sex, which are
crossed). If Age is numeric, and not a factor, then the type-III tests
that you requested don't test sensible hypotheses. In any event, if my guess
is right about the design, then you can use the Anova() function in the car
package for an equivalent analysis. See the repeated-measures example in
?Anova (for the O'Brien and Kaiser data).

You've already had an answer to the more general question.

I hope this helps,
John


John Fox
Senator William McMaster
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox




 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
 project.org] On Behalf Of Kristi Shoemaker
 Sent: November-26-11 11:08 AM
 To: r-help@r-project.org
 Subject: [R] SPSS - R

 I'm an SPSS user trying to make the transition to R.

 Can someone help me translate the following SPSS code into R?:


 GLM Total_tp1 Total_tp2 WITH Age Sex
   /WSFACTOR=Time 2 Repeated
   /METHOD=SSTYPE(3)
   /CRITERIA=ALPHA(.05)
   /WSDESIGN= Time
   /DESIGN= Age Sex Age*Sex.

 Also. can anyone recommend any resources to help SPSS users learn to
 things in R?

 Thanks,
 -kristi

 [[alternative HTML version deleted]]
[[alternative HTML version deleted]]


Michael Dewey
i...@aghmed.fsnet.co.uk
http://www.aghmed.fsnet.co.uk/home.html

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Re: [R] SPSS - R

[John Fox]

Dear Michael,

The original poster and I ended up pursuing this question off-list and, I
think, resolving the issue, discovering in the process that SPSS apparently
reports type-II tests that are really type-III tests. (Yes, one fits a
multivariate linear model prior to calling Anova() with the idata and
idesign arguments.)

Best,
 John


John Fox
Senator William McMaster
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox




 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
 project.org] On Behalf Of Michael Dewey
 Sent: November-30-11 6:49 AM
 To: Kristi Shoemaker; r-help@r-project.org
 Subject: Re: [R] SPSS - R
 
 At 16:41 27/11/2011, Kristi Shoemaker wrote:
 Hi John,
 
 Your assumptions are correct and those examples were very helpful,
 thanks!
 
 I think I'm almost there, but I'm screwing up something with the
 within-subjects factor (the example has two, I only have one). See
 below. Why am I not seeing my within-subjects factors in the ANOVA
 report?
 
 I am by no means an expert in this but my reading of the documentation
 suggests that the idata and idesign parameters are for multivariate
 models and that is not what you specified.
 
 
 
   Dat2
 Subj  Age Sex Time   HippV
 1   s01 32.9   1   0w 6.50098
 2   s01 32.9   1   6w 6.91793
 3   s02 35.1   0   0w 7.32480
 4   s02 35.1   0   6w 7.56012
 5   s03 34.4   0   0w 6.51385
 6   s03 34.4   0   6w 6.56875
 9   s05 39.9   1   0w 6.92855
 10  s05 39.9   1   6w 6.94926
 11  s06 29.5   1   0w 6.99383
 12  s06 29.5   1   6w 7.10568
 13  s07 45.9   1   0w 6.94380
 14  s07 45.9   1   6w 7.08190
 15  s08 20.3   1   0w 7.76881
 16  s08 20.3   1   6w 7.72725
 17  s09 26.9   0   0w 5.37566
 18  s09 26.9   0   6w 5.74887
 21  s11 22.0   0   0w 7.12992
 22  s11 22.0   0   6w 7.16237
 23  s12 31.0   1   0w 6.70629
 24  s12 31.0   1   6w 6.80872
 25  s13 50.1   1   0w 7.22649
 26  s13 50.1   1   6w 7.58900
 27  s14 22.2   0   0w 5.97577
 28  s14 22.2   0   6w 5.80801
 29  s16 20.4   1   0w 7.99554
 30  s16 20.4   1   6w 8.09260
 31  s20 24.0   0   0w 7.01014
 32  s20 24.0   0   6w 6.87821
 33  s21 32.4   0   0w 5.90883
 34  s21 32.4   0   6w 5.95392
 37  s24 22.2   0   0w 6.15474
 38  s24 22.2   0   6w 6.00906
 41  s27 22.2   1   0w 7.88765
 42  s27 22.2   1   6w 7.76038
 49  s35 24.3   0   0w 6.05998
 50  s35 24.3   0   6w 6.07399
 51  s36 23.5   0   0w 7.83182
 52  s36 23.5   0   6w 7.60268
 53  s38 59.7   1   0w 7.39672
 54  s38 59.7   1   6w 6.98291
 55  s39 40.5   0   0w 7.31330
 56  s39 40.5   0   6w 7.50559
 57  s40 24.2   1   0w 8.54958
 58  s40 24.2   1   6w 8.65016
 59  s41 23.6   1   0w 7.76049
 60  s41 23.6   1   6w 7.58946
 61  s42 53.3   0   0w 7.03388
 62  s42 53.3   0   6w 7.48384
 63  s43 34.4   0   0w 6.86967
 64  s43 34.4   0   6w 6.81076
 65  s44 44.8   0   0w 7.33779
 66  s44 44.8   0   6w 7.86175
 67  s45 40.2   1   0w 6.55963
 68  s45 40.2   1   6w 6.52577
 71  s47 26.5   0   0w 7.09418
 72  s47 26.5   0   6w 6.92850
 73  s48 22.7   0   0w 6.77078
 74  s48 22.7   0   6w 6.67289
 75  s50 36.1   1   0w 7.47208
 76  s50 36.1   1   6w 7.55876
   library(car)
 Loading required package: MASS
 Loading required package: nnet
 Loading required package: survival
 Loading required package: splines
   timepoints - factor(c(0w, 6w),
 + levels=c(0w,6w))
   idata=data.frame(timepoints)
   mod.ok - lm(HippV ~ Age*Sex,data=Dat2) (av.ok - Anova(mod.ok,
   idata=idata, idesign=~timepoints))
 Anova Table (Type II tests)
 
 Response: HippV
 Sum Sq Df F valuePr(F)
 Age0.0234  1   0.071 0.7909202
 Sex5.3082  1  16.128 0.0001781 ***
 Age:Sex4.7772  1  14.514 0.0003478 ***
 Residuals 18.4314 56
 ---
 Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
  
 
 
 
 
   From: John Fox j...@mcmaster.ca
 
 Cc: r-help@r-project.org
 Sent: Saturday, November 26, 2011 7:19 PM
 Subject: RE: [R] SPSS - R
 
 Dear Kristi,
 
 I assume that this is a repeated-measures ANOVA with one
 within-subjects factor (Time) and two between-subjects factors (Age
 and
 Sex, which are crossed). If Age is numeric, and not a factor, then the
 type-III tests that you requested don't test sensible hypotheses. In
 any event, if my guess is right about the design, then you can use the
 Anova() function in the car package for an equivalent analysis. See
 the
 repeated-measures example in ?Anova (for the O'Brien and Kaiser data).
 
 You've already had an answer to the more general question.
 
 I hope this helps,
 John
 
 
 John Fox
 Senator William McMaster
Professor of Social Statistics
 Department of Sociology
 McMaster University
 Hamilton, Ontario, Canada
 http://socserv.mcmaster.ca/jfox
 
 
 
 
   -Original Message-
   From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
   project.org

Re: [R] SPSS - R

[Kristi Shoemaker]

Hi John,

Your assumptions are correct and those examples were very helpful, thanks!

I think I'm almost there, but I'm screwing up something with the 
within-subjects factor (the example has two, I only have one). See below. Why 
am I not seeing my within-subjects factors in the ANOVA report?


 Dat2
   Subj  Age Sex Time   HippV
1   s01 32.9   1   0w 6.50098
2   s01 32.9   1   6w 6.91793
3   s02 35.1   0   0w 7.32480
4   s02 35.1   0   6w 7.56012
5   s03 34.4   0   0w 6.51385
6   s03 34.4   0   6w 6.56875
9   s05 39.9   1   0w 6.92855
10  s05 39.9   1   6w 6.94926
11  s06 29.5   1   0w 6.99383
12  s06 29.5   1   6w 7.10568
13  s07 45.9   1   0w 6.94380
14  s07 45.9   1   6w 7.08190
15  s08 20.3   1   0w 7.76881
16  s08 20.3   1   6w 7.72725
17  s09 26.9   0   0w 5.37566
18  s09 26.9   0   6w 5.74887
21  s11 22.0   0   0w 7.12992
22  s11 22.0   0   6w 7.16237
23  s12 31.0   1   0w 6.70629
24  s12 31.0   1   6w 6.80872
25  s13 50.1   1   0w 7.22649
26  s13 50.1   1   6w 7.58900
27  s14 22.2   0   0w 5.97577
28  s14 22.2   0   6w 5.80801
29  s16 20.4   1   0w 7.99554
30  s16 20.4   1   6w 8.09260
31  s20 24.0   0   0w 7.01014
32  s20 24.0   0   6w 6.87821
33  s21 32.4   0   0w 5.90883
34  s21 32.4   0   6w 5.95392
37  s24 22.2   0   0w 6.15474
38  s24 22.2   0   6w 6.00906
41  s27 22.2   1   0w 7.88765
42  s27 22.2   1   6w 7.76038
49  s35 24.3   0   0w 6.05998
50  s35 24.3   0   6w 6.07399
51  s36 23.5   0   0w 7.83182
52  s36 23.5   0   6w 7.60268
53  s38 59.7   1   0w 7.39672
54  s38 59.7   1   6w 6.98291
55  s39 40.5   0   0w 7.31330
56  s39 40.5   0   6w 7.50559
57  s40 24.2   1   0w 8.54958
58  s40 24.2   1   6w 8.65016
59  s41 23.6   1   0w 7.76049
60  s41 23.6   1   6w 7.58946
61  s42 53.3   0   0w 7.03388
62  s42 53.3   0   6w 7.48384
63  s43 34.4   0   0w 6.86967
64  s43 34.4   0   6w 6.81076
65  s44 44.8   0   0w 7.33779
66  s44 44.8   0   6w 7.86175
67  s45 40.2   1   0w 6.55963
68  s45 40.2   1   6w 6.52577
71  s47 26.5   0   0w 7.09418
72  s47 26.5   0   6w 6.92850
73  s48 22.7   0   0w 6.77078
74  s48 22.7   0   6w 6.67289
75  s50 36.1   1   0w 7.47208
76  s50 36.1   1   6w 7.55876
 library(car)
Loading required package: MASS
Loading required package: nnet
Loading required package: survival
Loading required package: splines
 timepoints - factor(c(0w, 6w),
+                 levels=c(0w,6w))
 idata=data.frame(timepoints)
 mod.ok - lm(HippV ~ Age*Sex,data=Dat2)
 (av.ok - Anova(mod.ok, idata=idata, idesign=~timepoints)) 
Anova Table (Type II tests)

Response: HippV
           Sum Sq Df F value    Pr(F)    
Age        0.0234  1   0.071 0.7909202    
Sex        5.3082  1  16.128 0.0001781 ***
Age:Sex    4.7772  1  14.514 0.0003478 ***
Residuals 18.4314 56                      
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 
 




 From: John Fox j...@mcmaster.ca

Cc: r-help@r-project.org 
Sent: Saturday, November 26, 2011 7:19 PM
Subject: RE: [R] SPSS - R

Dear Kristi,

I assume that this is a repeated-measures ANOVA with one within-subjects
factor (Time) and two between-subjects factors (Age and Sex, which are
crossed). If Age is numeric, and not a factor, then the type-III tests
that you requested don't test sensible hypotheses. In any event, if my guess
is right about the design, then you can use the Anova() function in the car
package for an equivalent analysis. See the repeated-measures example in
?Anova (for the O'Brien and Kaiser data). 

You've already had an answer to the more general question.

I hope this helps,
John


John Fox
Senator William McMaster
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox




 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
 project.org] On Behalf Of Kristi Shoemaker
 Sent: November-26-11 11:08 AM
 To: r-help@r-project.org
 Subject: [R] SPSS - R
 
 I'm an SPSS user trying to make the transition to R.
 
 Can someone help me translate the following SPSS code into R?:
 
 
 GLM Total_tp1 Total_tp2 WITH Age Sex
   /WSFACTOR=Time 2 Repeated
   /METHOD=SSTYPE(3)
   /CRITERIA=ALPHA(.05)
   /WSDESIGN= Time
   /DESIGN= Age Sex Age*Sex.
 
 Also. can anyone recommend any resources to help SPSS users learn to
 things in R?
 
 Thanks,
 -kristi
 
     [[alternative HTML version deleted]]
[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] SPSS - R

[Kristi Shoemaker]

I'm an SPSS user trying to make the transition to R.

Can someone help me translate the following SPSS code into R?:


GLM Total_tp1 Total_tp2 WITH Age Sex
  /WSFACTOR=Time 2 Repeated
  /METHOD=SSTYPE(3)
  /CRITERIA=ALPHA(.05)
  /WSDESIGN= Time
  /DESIGN= Age Sex Age*Sex.

Also. can anyone recommend any resources to help SPSS users learn to things in 
R?

Thanks,
-kristi

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] SPSS - R

[Frank Harrell]

If you know SPSS already why not learn R modeling syntax and do this
yourself?

If ALPHA(.05) implies that you are using stepwise variable selection note
that this is an invalid statistical technique.

Frank

Kristi Shoemaker wrote
 
 I'm an SPSS user trying to make the transition to R.
 
 Can someone help me translate the following SPSS code into R?:
 
 
 GLM Total_tp1 Total_tp2 WITH Age Sex
   /WSFACTOR=Time 2 Repeated
   /METHOD=SSTYPE(3)
   /CRITERIA=ALPHA(.05)
   /WSDESIGN= Time
   /DESIGN= Age Sex Age*Sex.
 
 Also. can anyone recommend any resources to help SPSS users learn to
 things in R?
 
 Thanks,
 -kristi
 
   [[alternative HTML version deleted]]
 
 
 __
 R-help@ mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.
 


-
Frank Harrell
Department of Biostatistics, Vanderbilt University
--
View this message in context: 
http://r.789695.n4.nabble.com/SPSS-R-tp4110995p4111006.html
Sent from the R help mailing list archive at Nabble.com.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] SPSS - R

[R. Michael Weylandt michael.weyla...@gmail.com]

Perhaps this website and the associated book will be of help: 
http://r4stats.com/

Michael

On Nov 26, 2011, at 11:08 AM, Kristi Shoemaker kristi.shoema...@yahoo.com 
wrote:

 I'm an SPSS user trying to make the transition to R.
 
 Can someone help me translate the following SPSS code into R?:
 
 
 GLM Total_tp1 Total_tp2 WITH Age Sex
 � /WSFACTOR=Time 2 Repeated
 � /METHOD=SSTYPE(3)
 � /CRITERIA=ALPHA(.05)
 � /WSDESIGN= Time
 � /DESIGN= Age Sex Age*Sex.
 
 Also. can anyone recommend any resources to help SPSS users learn to things 
 in R?
 
 Thanks,
 -kristi
 
[[alternative HTML version deleted]]
 
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] SPSS - R

[John Fox]

Dear Kristi,

I assume that this is a repeated-measures ANOVA with one within-subjects
factor (Time) and two between-subjects factors (Age and Sex, which are
crossed). If Age is numeric, and not a factor, then the type-III tests
that you requested don't test sensible hypotheses. In any event, if my guess
is right about the design, then you can use the Anova() function in the car
package for an equivalent analysis. See the repeated-measures example in
?Anova (for the O'Brien and Kaiser data). 

You've already had an answer to the more general question.

I hope this helps,
 John


John Fox
Senator William McMaster
  Professor of Social Statistics
Department of Sociology
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox




 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
 project.org] On Behalf Of Kristi Shoemaker
 Sent: November-26-11 11:08 AM
 To: r-help@r-project.org
 Subject: [R] SPSS - R
 
 I'm an SPSS user trying to make the transition to R.
 
 Can someone help me translate the following SPSS code into R?:
 
 
 GLM Total_tp1 Total_tp2 WITH Age Sex
   /WSFACTOR=Time 2 Repeated
   /METHOD=SSTYPE(3)
   /CRITERIA=ALPHA(.05)
   /WSDESIGN= Time
   /DESIGN= Age Sex Age*Sex.
 
 Also. can anyone recommend any resources to help SPSS users learn to
 things in R?
 
 Thanks,
 -kristi
 
   [[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.