Re: [sage-support] Re: Sage Crash Report: Missing symbols in conda build for macOS?

2019-11-19 Thread Michael Boyle 
That works!  Similarly

conda install -n sage "pynac=0.7.26=py36ha01bd41_0"

works for my python 3.6 attempt.  I see that you've already opened an issue 
on pynac-feedstock, so I'll leave you to it.

Thanks very much for you help!

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Re: [sage-support] Re: Sage Crash Report: Missing symbols in conda build for macOS?

2019-11-19 Thread Isuru Fernando 
Hi,

Can you try doing the following?

conda install -n sage27 "pynac=0.7.26=py27ha01bd41_0"

Isuru

On Tue, Nov 19, 2019 at 11:23 AM Michael Boyle <
michael.oliver.bo...@gmail.com> wrote:

> Sure.  Here it is:
>
> > conda list
> # packages in environment at
> /Users/myusername/.continuum/miniconda3.7/envs/sage27:
> #
> # NameVersion   Build  Channel
> _r-mutex  1.0.1   anacondar_1conda-forge
> alabaster 0.7.12 py_0conda-forge
> appdirs   1.4.3  py_1conda-forge
> appnope   0.1.0 py27_1000conda-forge
> arb   2.16.0h3aece09_1000conda-forge
> attrs 19.3.0 py_0conda-forge
> automat   0.8.0  py_0conda-forge
> babel 2.7.0  py_0conda-forge
> backports 1.0py_2conda-forge
> backports.functools_lru_cache 1.6.1  py_0
> conda-forge
> backports.os  0.1.1 py27_1001conda-forge
> backports.shutil_get_terminal_size 1.0.0  py_3
> conda-forge
> backports_abc 0.5py_1conda-forge
> bdw-gc8.0.4ha1b3eb9_0conda-forge
> bleach3.1.0  py_0conda-forge
> brial 1.2.5  py_1conda-forge
> bwidget   1.9.130conda-forge
> bzip2 1.0.8h01d97ff_1conda-forge
> ca-certificates   2019.9.11hecc5488_0conda-forge
> cairo 1.16.0he1c11cd_1002conda-forge
> cctools   921  h5ba7a2e_4conda-forge
> cddlib1!0.94j   h65ac59c_1001conda-forge
> certifi   2019.9.11py27_0conda-forge
> cffi  1.13.2   py27h33e799b_0conda-forge
> chardet   3.0.4 py27_1003conda-forge
> clang 9.0.0   default_hf57f61e_4conda-forge
> clang_osx-64  9.0.0h22b1bf0_3conda-forge
> clangxx   9.0.0   default_hf57f61e_4conda-forge
> clangxx_osx-649.0.0h22b1bf0_3conda-forge
> click 7.0py_0conda-forge
> cliquer   1.21  h1de35cc_1000conda-forge
> compiler-rt   9.0.0h2b4a0d1_1conda-forge
> configparser  3.7.3py27_1conda-forge
> constantly15.1.0 py_0conda-forge
> contextlib2   0.6.0.post1py_0conda-forge
> cryptography  2.8  py27hafa8578_0conda-forge
> curl  7.65.3   h22ea746_0conda-forge
> cvxopt1.2.3   py27h43946de_203conda-forge
> cycler0.10.0 py_2conda-forge
> cypari2   2.1.1py27h7c56200_0conda-forge
> cysignals 1.10.2   py27hba7914e_1conda-forge
> cython0.29.14  py27h4a8c4bd_0conda-forge
> decorator 4.4.1  py_0conda-forge
> defusedxml0.6.0  py_0conda-forge
> docutils  0.15.2   py27_0conda-forge
> dsdp  5.8   h7674d01_1203conda-forge
> ecl   16.1.2h0672242_1004conda-forge
> eclib 20190226 he5f4af6_2conda-forge
> ecm   7.0.4 h65ac59c_1002conda-forge
> entrypoints   0.3   py27_1000conda-forge
> enum341.1.6 py27_1002conda-forge
> expat 2.2.5 h4a8c4bd_1004conda-forge
> fastcache 1.1.0py27h0b31af3_0conda-forge
> fflas-ffpack  2.4.3h75e9206_1conda-forge
> fftw  3.3.8   nompi_h44ae4c8_1110
> conda-forge
> flask 0.11.1 py_1conda-forge
> flask-autoindex   0.6.2  py_0conda-forge
> flask-babel   0.12.2 py_0conda-forge
> flask-oldsessions 0.10   py_0conda-forge
> flask-openid  1.2.5 py27_1003conda-forge
> flask-silk0.2py_0conda-forge
> flintqs

[sage-support] Re: Sage Crash Report: Missing symbols in conda build for macOS?

2019-11-19 Thread Michael Boyle 
Sure.  Here it is:

> conda list
# packages in environment at 
/Users/myusername/.continuum/miniconda3.7/envs/sage27:
#
# NameVersion   Build  Channel
_r-mutex  1.0.1   anacondar_1conda-forge
alabaster 0.7.12 py_0conda-forge
appdirs   1.4.3  py_1conda-forge
appnope   0.1.0 py27_1000conda-forge
arb   2.16.0h3aece09_1000conda-forge
attrs 19.3.0 py_0conda-forge
automat   0.8.0  py_0conda-forge
babel 2.7.0  py_0conda-forge
backports 1.0py_2conda-forge
backports.functools_lru_cache 1.6.1  py_0conda-forge
backports.os  0.1.1 py27_1001conda-forge
backports.shutil_get_terminal_size 1.0.0  py_3
conda-forge
backports_abc 0.5py_1conda-forge
bdw-gc8.0.4ha1b3eb9_0conda-forge
bleach3.1.0  py_0conda-forge
brial 1.2.5  py_1conda-forge
bwidget   1.9.130conda-forge
bzip2 1.0.8h01d97ff_1conda-forge
ca-certificates   2019.9.11hecc5488_0conda-forge
cairo 1.16.0he1c11cd_1002conda-forge
cctools   921  h5ba7a2e_4conda-forge
cddlib1!0.94j   h65ac59c_1001conda-forge
certifi   2019.9.11py27_0conda-forge
cffi  1.13.2   py27h33e799b_0conda-forge
chardet   3.0.4 py27_1003conda-forge
clang 9.0.0   default_hf57f61e_4conda-forge
clang_osx-64  9.0.0h22b1bf0_3conda-forge
clangxx   9.0.0   default_hf57f61e_4conda-forge
clangxx_osx-649.0.0h22b1bf0_3conda-forge
click 7.0py_0conda-forge
cliquer   1.21  h1de35cc_1000conda-forge
compiler-rt   9.0.0h2b4a0d1_1conda-forge
configparser  3.7.3py27_1conda-forge
constantly15.1.0 py_0conda-forge
contextlib2   0.6.0.post1py_0conda-forge
cryptography  2.8  py27hafa8578_0conda-forge
curl  7.65.3   h22ea746_0conda-forge
cvxopt1.2.3   py27h43946de_203conda-forge
cycler0.10.0 py_2conda-forge
cypari2   2.1.1py27h7c56200_0conda-forge
cysignals 1.10.2   py27hba7914e_1conda-forge
cython0.29.14  py27h4a8c4bd_0conda-forge
decorator 4.4.1  py_0conda-forge
defusedxml0.6.0  py_0conda-forge
docutils  0.15.2   py27_0conda-forge
dsdp  5.8   h7674d01_1203conda-forge
ecl   16.1.2h0672242_1004conda-forge
eclib 20190226 he5f4af6_2conda-forge
ecm   7.0.4 h65ac59c_1002conda-forge
entrypoints   0.3   py27_1000conda-forge
enum341.1.6 py27_1002conda-forge
expat 2.2.5 h4a8c4bd_1004conda-forge
fastcache 1.1.0py27h0b31af3_0conda-forge
fflas-ffpack  2.4.3h75e9206_1conda-forge
fftw  3.3.8   nompi_h44ae4c8_1110conda-forge
flask 0.11.1 py_1conda-forge
flask-autoindex   0.6.2  py_0conda-forge
flask-babel   0.12.2 py_0conda-forge
flask-oldsessions 0.10   py_0conda-forge
flask-openid  1.2.5 py27_1003conda-forge
flask-silk0.2py_0conda-forge
flintqs   1.0   hc269f14_1000conda-forge
fontconfig2.13.1h6b1039f_1001conda-forge
fplll 5.2.1 hc88034f_1000conda-forge
fpylll0.4.1devpy27heb9bef1_1000conda-forge
freetype  2.10.0

[sage-support] Re: Sage Crash Report: Missing symbols in conda build for macOS?

2019-11-19 Thread Julian Rüth 
Hi Micheal,

could you share the output of `conda list` for that environment?

Feel free to open an issue for this at 
https://github.com/conda-forge/sage-feedstock/issues as well.

julian

On Tuesday, November 19, 2019 at 6:04:23 PM UTC+1, Michael Boyle wrote:
>
> I followed the installation instructions for conda 
>  with both
> python=3.6 (the most recent version that could install sage without
> conflicts) and then python=2.7 (the one specifically cited in the
> instructions) on macOS 10.13.6, using miniconda3.7.  Both complete
> installation happily, but sage immediately dies in both environment.s
> I have never used Sage before, so I have no Sage configuration, and I had
> no input history during the session because I literally just typed `sage`
> on the command line and it failed.  I use conda frequently, and don't 
> usually
> have problems, so I doubt that it's anything very specific to my setup.
>
> Both 3.6 and 2.7 fail in the same way: there's a missing symbol from some
> dylib.  The symbol is
>
> __ZNSt3__16vectorIN5GiNaC2exENS_9allocatorIS2_EEE10deallocateEv
>
> which demangles to
>
> std::__1::vector 
> >::deallocate()
>
> So I guess that's not getting included in lib, somehow.  The full report
> for 2.7 is attached — though the 3.6 report is essentially identical.
>
> I've searched through every dylib that conda installs in envs/sage/lib, and
> the only similar symbol I find is
>
> __ZNSt3__16vectorIN5GiNaC2exENS_9allocatorIS2_EEE13__vdeallocateEv
>
> which is in libpynac.dylib -> libpynac.18.dylib, and demangles to
>
> std::__1::vector 
> >::__vdeallocate()
>
> I wonder if it's related to https://github.com/pynac/pynac/issues/239.
>
> I appreciate any help you can give me.  Thanks!
>
>

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