Re: [tips] Smell Cilia

2012-09-04 Thread Carol DeVolder
Those were both very helpful, Mike, thank you!!!
Carol


On Tue, Sep 4, 2012 at 2:34 PM, Michael Palij  wrote:

> For one straighforward description, see:
> http://www.vetmed.vt.edu/education/Curriculum/vm8054/eye/RODCONE.HTM
>
> Quoting from the description of the second image:
>
> |The image at the left, a transmission electron micrograph, shows
> |the "waist" between the inner and outer rod segments. The light
> |sensitive lamellae of the outer segments are obvious, as is the
> |narrow constriction. Note that in the constriction itself, there is
> |an actual modified cilium, complete with basal body and ciliary
> |rootlets. This remarkable structure is proof that the outer segment
> |is really a highly modified cilium, and that the membranous lamellae
> |are extensive ramifications of its plasma membrane. the modification
> |of cilia to perform sensory functions is found in other locations in
> |mammals: the olfactory cells of the nose are another example of
> |a highly-specialized neuron with greatly-modified cilia devoted to
> |sense perception rather than movement of fluid.
>
> For a tradition review of the subject, see:
>
> http://pharmacology.case.edu/department/faculty/primary/pages/Palczewski/articles/Progress%20in%20Retinal%20and%20Eye%20Research.pdf
>
> A search for cilia in the article will locate relevant sections.
>
> -Mike Palij
> New York University
> m...@nyu.edu
>
>
>   Original Message 
> On Tue, 04 Sep 2012 10:12:00 -0700, Carol DeVolder
>
> This if fascinating stuff. I wonder if someone could explain to me
> something from the article. A little Googling only served to confuse me
> more. The article posits that photoreceptor outer segments have a 9+0
> arrangement, which should mean that there are nine pairs of cilia arranged
> in a ring-like structure. That doesn't connect to my idea of the outer
> segment being a single entity--not paired, and not nine of them per cell.
> Granted, I read through the article rather quickly, but if someone could
> explain, I'd appreciate it--back channel is fine since others may not be as
> fascinated by cilia as I am.
> Thanks,
> Carol
>
>
> On Tue, Sep 4, 2012 at 7:59 AM, Michael Palij  wrote:
>
> > I don't pretend to be an expert on the ciliopathies (not even on the
> > internet) but there are a variety of different types of disorders because
> > different types of cilia cells are located through the body..  Consider
> > the following review article:
> >
> > Armengot Carceller, M et al (2010). Primary ciliary dyskinesia.
> > Ciliopathies Acta Otorrinolaringologica - English Edition 2010
> > Volume:  61  Issue:  2  Page:  149-159.
> >
> > The above is available in PDF form at:
> >
> >
> http://www.elsevier.es/sites/default/files/elsevier/pdf/102/102v61n02a13147310pdf001_2.pdf
> >
> > Table 1 identifies different types of cilia and their locations.
> > Photoreceptor cilia serve as rods and cones while Kinocilia
> > serve in the inner ear.  I don't know but someone can check
> > if someone who develops retinitis pigmentosa (an eye disorder)
> > also develop hearing problems but at least one source points
> > out that the defect that cause retinitis pigmentosa is related
> > to the development of Senior–Løken syndrome, a kidney based
> > disorder where the cilia suffer the same defect; see:
> > http://ezproxy.library.nyu.edu:3659/doi/full/10.1056/NEJMra1010172
> >
> > I'm only guessing but I think that reasonable general review of
> > cilia and ciliopathy are provided in the following:
> > http://jcb.rupress.org/content/180/1/17.long
> > and
> >
> http://www.annualreviews.org/doi/abs/10.1146/annurev.genom.7.080505.115610
> >
> > One final point, the little tail on sperm is also a cilia cell.
> >
> > -Mike Palij
> > New York University
> > m...@nyu.edu
> >
> > -   Original Message ---
> > On Tue, 04 Sep 2012 00:52:49 -0700, Mike Wiliams wrote:
> >
> > The main problem with these studies is the use of a pathology that does
> > not exist in nature. The authors: "... the relevance of IFT88 mutations
> > to human pathology is unknown." The logic follows the line that, "We
> > produced a mouse that doesn't have protein IFT88 and this protein is
> > necessary for cilia growth.  We discovered that when we give the mouse a
> > treatment that increases protein IFT88, they grow cilia".  An IFT88
> > protein deficit is not a natural illness.  It was apparently produced by
> > a type of selective inbreeding.  It reminds me of the attempts to treat
> > scopolamine-induced memory disorder.  A number of medications were
> > effective but none panned out as effective with any naturally-occurring
> > memory disorder.
> >
> > I wonder if the hearing and balance systems are poor in these mice.  The
> > cilia in these systems are much more important than smell.
> >
> > Mike Williams
> >
> > > Subject: What's That Smell?
> > > From: Michael Palij
> > > Date: Mon, 3 Sep 2012 08:59:40 -0400
> > >
> > > Some new research involving gene th

Re: [tips] Smell Cilia

2012-09-04 Thread Michael Palij
For one straighforward description, see:
http://www.vetmed.vt.edu/education/Curriculum/vm8054/eye/RODCONE.HTM

Quoting from the description of the second image:

|The image at the left, a transmission electron micrograph, shows
|the "waist" between the inner and outer rod segments. The light
|sensitive lamellae of the outer segments are obvious, as is the
|narrow constriction. Note that in the constriction itself, there is
|an actual modified cilium, complete with basal body and ciliary
|rootlets. This remarkable structure is proof that the outer segment
|is really a highly modified cilium, and that the membranous lamellae
|are extensive ramifications of its plasma membrane. the modification
|of cilia to perform sensory functions is found in other locations in
|mammals: the olfactory cells of the nose are another example of
|a highly-specialized neuron with greatly-modified cilia devoted to
|sense perception rather than movement of fluid.

For a tradition review of the subject, see:
http://pharmacology.case.edu/department/faculty/primary/pages/Palczewski/articles/Progress%20in%20Retinal%20and%20Eye%20Research.pdf

A search for cilia in the article will locate relevant sections.

-Mike Palij
New York University
m...@nyu.edu


  Original Message 
On Tue, 04 Sep 2012 10:12:00 -0700, Carol DeVolder

This if fascinating stuff. I wonder if someone could explain to me
something from the article. A little Googling only served to confuse me
more. The article posits that photoreceptor outer segments have a 9+0
arrangement, which should mean that there are nine pairs of cilia arranged
in a ring-like structure. That doesn't connect to my idea of the outer
segment being a single entity--not paired, and not nine of them per cell.
Granted, I read through the article rather quickly, but if someone could
explain, I'd appreciate it--back channel is fine since others may not be as
fascinated by cilia as I am.
Thanks,
Carol


On Tue, Sep 4, 2012 at 7:59 AM, Michael Palij  wrote:

> I don't pretend to be an expert on the ciliopathies (not even on the
> internet) but there are a variety of different types of disorders because
> different types of cilia cells are located through the body..  Consider
> the following review article:
>
> Armengot Carceller, M et al (2010). Primary ciliary dyskinesia.
> Ciliopathies Acta Otorrinolaringologica - English Edition 2010
> Volume:  61  Issue:  2  Page:  149-159.
>
> The above is available in PDF form at:
>
> http://www.elsevier.es/sites/default/files/elsevier/pdf/102/102v61n02a13147310pdf001_2.pdf
>
> Table 1 identifies different types of cilia and their locations.
> Photoreceptor cilia serve as rods and cones while Kinocilia
> serve in the inner ear.  I don't know but someone can check
> if someone who develops retinitis pigmentosa (an eye disorder)
> also develop hearing problems but at least one source points
> out that the defect that cause retinitis pigmentosa is related
> to the development of Senior–Løken syndrome, a kidney based
> disorder where the cilia suffer the same defect; see:
> http://ezproxy.library.nyu.edu:3659/doi/full/10.1056/NEJMra1010172
>
> I'm only guessing but I think that reasonable general review of
> cilia and ciliopathy are provided in the following:
> http://jcb.rupress.org/content/180/1/17.long
> and
> http://www.annualreviews.org/doi/abs/10.1146/annurev.genom.7.080505.115610
>
> One final point, the little tail on sperm is also a cilia cell.
>
> -Mike Palij
> New York University
> m...@nyu.edu
>
> -   Original Message ---
> On Tue, 04 Sep 2012 00:52:49 -0700, Mike Wiliams wrote:
>
> The main problem with these studies is the use of a pathology that does
> not exist in nature. The authors: "... the relevance of IFT88 mutations
> to human pathology is unknown." The logic follows the line that, "We
> produced a mouse that doesn't have protein IFT88 and this protein is
> necessary for cilia growth.  We discovered that when we give the mouse a
> treatment that increases protein IFT88, they grow cilia".  An IFT88
> protein deficit is not a natural illness.  It was apparently produced by
> a type of selective inbreeding.  It reminds me of the attempts to treat
> scopolamine-induced memory disorder.  A number of medications were
> effective but none panned out as effective with any naturally-occurring
> memory disorder.
>
> I wonder if the hearing and balance systems are poor in these mice.  The
> cilia in these systems are much more important than smell.
>
> Mike Williams
>
> > Subject: What's That Smell?
> > From: Michael Palij
> > Date: Mon, 3 Sep 2012 08:59:40 -0400
> >
> > Some new research involving gene therapy in a mouse model shows
> > promise for treating a group of disorders called ciliopathies which are
> > dysfunctions of the cilia.  Most psychologists are familiar with cilia
> > from the role they play in hearing, seeing, and smell.  The new research
> > focuses on how to repair the cilia in mice that have genet

Re: [tips] Smell Cilia

2012-09-04 Thread Carol DeVolder
This if fascinating stuff. I wonder if someone could explain to me
something from the article. A little Googling only served to confuse me
more. The article posits that photoreceptor outer segments have a 9+0
arrangement, which should mean that there are nine pairs of cilia arranged
in a ring-like structure. That doesn't connect to my idea of the outer
segment being a single entity--not paired, and not nine of them per cell.
Granted, I read through the article rather quickly, but if someone could
explain, I'd appreciate it--back channel is fine since others may not be as
fascinated by cilia as I am.
Thanks,
Carol


On Tue, Sep 4, 2012 at 7:59 AM, Michael Palij  wrote:

> I don't pretend to be an expert on the ciliopathies (not even on the
> internet) but there are a variety of different types of disorders because
> different types of cilia cells are located through the body..  Consider
> the following review article:
>
> Armengot Carceller, M et al (2010). Primary ciliary dyskinesia.
> Ciliopathies Acta Otorrinolaringologica - English Edition 2010
> Volume:  61  Issue:  2  Page:  149-159.
>
> The above is available in PDF form at:
>
> http://www.elsevier.es/sites/default/files/elsevier/pdf/102/102v61n02a13147310pdf001_2.pdf
>
> Table 1 identifies different types of cilia and their locations.
> Photoreceptor cilia serve as rods and cones while Kinocilia
> serve in the inner ear.  I don't know but someone can check
> if someone who develops retinitis pigmentosa (an eye disorder)
> also develop hearing problems but at least one source points
> out that the defect that cause retinitis pigmentosa is related
> to the development of Senior–Løken syndrome, a kidney based
> disorder where the cilia suffer the same defect; see:
> http://ezproxy.library.nyu.edu:3659/doi/full/10.1056/NEJMra1010172
>
> I'm only guessing but I think that reasonable general review of
> cilia and ciliopathy are provided in the following:
> http://jcb.rupress.org/content/180/1/17.long
> and
> http://www.annualreviews.org/doi/abs/10.1146/annurev.genom.7.080505.115610
>
> One final point, the little tail on sperm is also a cilia cell.
>
> -Mike Palij
> New York University
> m...@nyu.edu
>
> -   Original Message ---
> On Tue, 04 Sep 2012 00:52:49 -0700, Mike Wiliams wrote:
>
> The main problem with these studies is the use of a pathology that does
> not exist in nature. The authors: "... the relevance of IFT88 mutations
> to human pathology is unknown." The logic follows the line that, "We
> produced a mouse that doesn't have protein IFT88 and this protein is
> necessary for cilia growth.  We discovered that when we give the mouse a
> treatment that increases protein IFT88, they grow cilia".  An IFT88
> protein deficit is not a natural illness.  It was apparently produced by
> a type of selective inbreeding.  It reminds me of the attempts to treat
> scopolamine-induced memory disorder.  A number of medications were
> effective but none panned out as effective with any naturally-occurring
> memory disorder.
>
> I wonder if the hearing and balance systems are poor in these mice.  The
> cilia in these systems are much more important than smell.
>
> Mike Williams
>
> > Subject: What's That Smell?
> > From: Michael Palij
> > Date: Mon, 3 Sep 2012 08:59:40 -0400
> >
> > Some new research involving gene therapy in a mouse model shows
> > promise for treating a group of disorders called ciliopathies which are
> > dysfunctions of the cilia.  Most psychologists are familiar with cilia
> > from the role they play in hearing, seeing, and smell.  The new research
> > focuses on how to repair the cilia in mice that have genetically disabled
> > olfactory cilia, that is, mice who are born without a sense of smell.
> > If such gene therapy is effective in humans, then a number of
> ciliopathies
> > might be cured or significantly improved.
> >
> > The popular media has picked up on the story and here is one example
> > of their presentation:
> > http://www.bbc.co.uk/news/health-19409154
> >
> > A pop science presentation on the Science Daily website is available
> > here (it provides much more detail and additional links):
> > http://www.sciencedaily.com/releases/2012/09/120902143147.htm
> >
> > Some of the researchers involved in the study are at the University
> > of Michigan and the U of M media office provided this press release:
> > http://www.uofmhealth.org/news/archive/201209/smell
> >
> > The original research is published in Nature Medicine:
> > http://www.nature.com/nm/journal/vaop/ncurrent/full/nm.2860.html
> >
> > The reference for the article is:
> >
> > Jeremy C McIntyre, Erica E Davis, Ariell Joiner, Corey L Williams,
> > I-Chun Tsai, Paul M Jenkins, Dyke P McEwen, Lian Zhang, John
> > Escobado, Sophie Thomas, Katarzyna Szymanska, Colin A Johnson,
> > Philip L Beales, Eric D Green, James C Mullikin, NISC Comparative
> > Sequencing Program, Aniko Sabo, Donna M Muzny, Richard A Gibbs,
> > Tania Attié-Bitach, Bradley K Yoder, Rand

Re:[tips] Smell Cilia

2012-09-04 Thread Michael Palij
I don't pretend to be an expert on the ciliopathies (not even on the
internet) but there are a variety of different types of disorders because
different types of cilia cells are located through the body..  Consider
the following review article:

Armengot Carceller, M et al (2010). Primary ciliary dyskinesia.
Ciliopathies Acta Otorrinolaringologica - English Edition 2010
Volume:  61  Issue:  2  Page:  149-159.

The above is available in PDF form at:
http://www.elsevier.es/sites/default/files/elsevier/pdf/102/102v61n02a13147310pdf001_2.pdf

Table 1 identifies different types of cilia and their locations.
Photoreceptor cilia serve as rods and cones while Kinocilia
serve in the inner ear.  I don't know but someone can check
if someone who develops retinitis pigmentosa (an eye disorder)
also develop hearing problems but at least one source points
out that the defect that cause retinitis pigmentosa is related
to the development of Senior–Løken syndrome, a kidney based
disorder where the cilia suffer the same defect; see:
http://ezproxy.library.nyu.edu:3659/doi/full/10.1056/NEJMra1010172

I'm only guessing but I think that reasonable general review of
cilia and ciliopathy are provided in the following:
http://jcb.rupress.org/content/180/1/17.long
and
http://www.annualreviews.org/doi/abs/10.1146/annurev.genom.7.080505.115610

One final point, the little tail on sperm is also a cilia cell.

-Mike Palij
New York University
m...@nyu.edu

-   Original Message ---
On Tue, 04 Sep 2012 00:52:49 -0700, Mike Wiliams wrote:

The main problem with these studies is the use of a pathology that does
not exist in nature. The authors: "... the relevance of IFT88 mutations
to human pathology is unknown." The logic follows the line that, "We
produced a mouse that doesn't have protein IFT88 and this protein is
necessary for cilia growth.  We discovered that when we give the mouse a
treatment that increases protein IFT88, they grow cilia".  An IFT88
protein deficit is not a natural illness.  It was apparently produced by
a type of selective inbreeding.  It reminds me of the attempts to treat
scopolamine-induced memory disorder.  A number of medications were
effective but none panned out as effective with any naturally-occurring
memory disorder.

I wonder if the hearing and balance systems are poor in these mice.  The
cilia in these systems are much more important than smell.

Mike Williams

> Subject: What's That Smell?
> From: Michael Palij
> Date: Mon, 3 Sep 2012 08:59:40 -0400
>
> Some new research involving gene therapy in a mouse model shows
> promise for treating a group of disorders called ciliopathies which are
> dysfunctions of the cilia.  Most psychologists are familiar with cilia
> from the role they play in hearing, seeing, and smell.  The new research
> focuses on how to repair the cilia in mice that have genetically disabled
> olfactory cilia, that is, mice who are born without a sense of smell.
> If such gene therapy is effective in humans, then a number of ciliopathies
> might be cured or significantly improved.
>
> The popular media has picked up on the story and here is one example
> of their presentation:
> http://www.bbc.co.uk/news/health-19409154
>
> A pop science presentation on the Science Daily website is available
> here (it provides much more detail and additional links):
> http://www.sciencedaily.com/releases/2012/09/120902143147.htm
>
> Some of the researchers involved in the study are at the University
> of Michigan and the U of M media office provided this press release:
> http://www.uofmhealth.org/news/archive/201209/smell
>
> The original research is published in Nature Medicine:
> http://www.nature.com/nm/journal/vaop/ncurrent/full/nm.2860.html
>
> The reference for the article is:
>
> Jeremy C McIntyre, Erica E Davis, Ariell Joiner, Corey L Williams,
> I-Chun Tsai, Paul M Jenkins, Dyke P McEwen, Lian Zhang, John
> Escobado, Sophie Thomas, Katarzyna Szymanska, Colin A Johnson,
> Philip L Beales, Eric D Green, James C Mullikin, NISC Comparative
> Sequencing Program, Aniko Sabo, Donna M Muzny, Richard A Gibbs,
> Tania Attié-Bitach, Bradley K Yoder, Randall R Reed, Nicholas Katsanis,
> Jeffrey R Martens. (2012).
> Gene therapy rescues cilia defects and restores olfactory function
> in a mammalian ciliopathy model.
> Nature Medicine, 2012;
> DOI: 10.1038/nm.2860
>
> I suspect that if this research is successful in humans, then olfactory
> abilities lost to toxins and age might be successfully treated.  It may
> be particularly useful in the elderly who have developed a diminished
> sense of smell.

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Re:[tips] Smell Cilia

2012-09-04 Thread Mike Wiliams
The main problem with these studies is the use of a pathology that does 
not exist in nature. The authors: "... the relevance of IFT88 mutations 
to human pathology is unknown." The logic follows the line that, "We 
produced a mouse that doesn't have protein IFT88 and this protein is 
necessary for cilia growth.  We discovered that when we give the mouse a 
treatment that increases protein IFT88, they grow cilia".  An IFT88 
protein deficit is not a natural illness.  It was apparently produced by 
a type of selective inbreeding.  It reminds me of the attempts to treat 
scopolamine-induced memory disorder.  A number of medications were 
effective but none panned out as effective with any naturally-occurring 
memory disorder.

I wonder if the hearing and balance systems are poor in these mice.  The 
cilia in these systems are much more important than smell.

Mike Williams


On 9/4/12 1:00 AM, Teaching in the Psychological Sciences (TIPS) digest 
wrote:
> TIPS Digest for Monday, September 03, 2012.
>
> 1. What's That Smell?
> 2. What's That Smell: Dogs&  Orcas Edition
> 3. Re: What's That Smell: Dogs&  Orcas Edition
> 4. The Effective But Forgotten Benezet Method of K-8 Education
>
> --
>
> Subject: What's That Smell?
> From: Michael Palij
> Date: Mon, 3 Sep 2012 08:59:40 -0400
> X-Message-Number: 1
>
> Some new research involving gene therapy in a mouse model shows
> promise for treating a group of disorders called ciliopathies which are
> dysfunctions of the cilia.  Most psychologists are familiar with cilia
> from the role they play in hearing, seeing, and smell.  The new research
> focuses on how to repair the cilia in mice that have genetically disabled
> olfactory cilia, that is, mice who are born without a sense of smell.
> If such gene therapy is effective in humans, then a number of ciliopathies
> might be cured or significantly improved.
>
> The popular media has picked up on the story and here is one example
> of their presentation:
> http://www.bbc.co.uk/news/health-19409154
>
> A pop science presentation on the Science Daily website is available
> here (it provides much more detail and additional links):
> http://www.sciencedaily.com/releases/2012/09/120902143147.htm
>
> Some of the researchers involved in the study are at the University
> of Michigan and the U of M media office provided this press release:
> http://www.uofmhealth.org/news/archive/201209/smell
>
> The original research is published in Nature Medicine:
> http://www.nature.com/nm/journal/vaop/ncurrent/full/nm.2860.html
>
> The reference for the article is:
>
> Jeremy C McIntyre, Erica E Davis, Ariell Joiner, Corey L Williams,
> I-Chun Tsai, Paul M Jenkins, Dyke P McEwen, Lian Zhang, John
> Escobado, Sophie Thomas, Katarzyna Szymanska, Colin A Johnson,
> Philip L Beales, Eric D Green, James C Mullikin, NISC Comparative
> Sequencing Program, Aniko Sabo, Donna M Muzny, Richard A Gibbs,
> Tania Attié-Bitach, Bradley K Yoder, Randall R Reed, Nicholas Katsanis,
> Jeffrey R Martens. (2012).
> Gene therapy rescues cilia defects and restores olfactory function
> in a mammalian ciliopathy model.
> Nature Medicine, 2012;
> DOI: 10.1038/nm.2860
>
> I suspect that if this research is successful in humans, then olfactory
> abilities lost to toxins and age might be successfully treated.  It may
> be particularly useful in the elderly who have developed a diminished
> sense of smell.
>
> -Mike Palij
> New York University
> m...@nyu.edu
>
> P.S.  One point for the person who can guess which movie the subject
> line is from. ;-)
>


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