Re: [Bioc-devel] git help

2018-01-03 Thread Kevin Horan
Nitesh, I tried to re-construct the repo starting from what is left in the SVN repository, but I couldn't get all the branches to come over and it just generally looks too different to easily replace the bioc repo. I was thinking though, if its easy for you to clobber the current bio

Re: [Bioc-devel] git help

2018-01-03 Thread Turaga, Nitesh
Hi Kevin, I can help you with this. I can take you back to a state before August 18th and put that repository up on our Git server. From that point onwards you’d have to reapply all the changes on that repository from "commit ae93b1e9bcc574b5c8e9fc13b914286464ff4389" and onwards. commit ae93

Re: [Bioc-devel] git help

2018-01-03 Thread Kevin Horan
Nitesh, That sounds great, thanks. Kevin On 01/03/2018 01:53 PM, Turaga, Nitesh wrote: Hi Kevin, I can help you with this. I can take you back to a state before August 18th and put that repository up on our Git server. From that point onwards you’d have to reapply all the changes on t

Re: [Bioc-devel] git help

2018-01-04 Thread Turaga, Nitesh
Hi Kevin, I have your package reset to this commit e3a8d2122a65305c478276e538faace277ea9ed6. Please check. You will need to overlay all the commits including the new release on top of this (RELEASE_3_6). If you have any questions further on this, please ask before pushing to Bioconductor.

Re: [Bioc-devel] git help

2018-01-05 Thread Turaga, Nitesh
Hi Kevin, Please overlay the commits so that we can get your package building on our build machines. Please do this soon. You also have to make RELEASE_3_6 branch now. We have skipped your package for now, and it won’t show up in the release report. Thanks Nitesh > On Jan 4, 2018, at 10:

Re: [Bioc-devel] git help

2018-01-07 Thread Kevin Horan
Nitesh, I have pushed changes to both the master and RELEASE_3_6 branches now. Kevin On 01/05/2018 11:14 AM, Turaga, Nitesh wrote: Hi Kevin, Please overlay the commits so that we can get your package building on our build machines. Please do this soon. You also have to make RELEASE_3_6

Re: [Bioc-devel] git help

2018-01-07 Thread Turaga, Nitesh
Hi Kevin, It seems you have lost a few commits which are important in tracking RELEASE’s in Bioconductor. commit fb5868c2fdfa607b52e467881212b3619a8b0ae9 (HEAD -> master) Author: Hervé Pagès Date: Mon Oct 30 12:52:08 2017 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_6

Re: [Bioc-devel] git help

2018-01-07 Thread Turaga, Nitesh
Now your version numbers don’t match. You skip versions without those commits Your history is supposed to look like this, commit 5a1ad6ff08747d1380875840fe96d3633c210ee2 (HEAD -> master) Author: khoran Date: Sun Jan 7 09:44:16 2018 -0800 History was rolled back 6 months to remove dup comm

Re: [Bioc-devel] git help

2018-01-07 Thread Turaga, Nitesh
Hi Kevin, One last message, give me a green light to fix your repository once you have had a chance to see my emails. Best, Nitesh > On Jan 7, 2018, at 2:17 PM, Turaga, Nitesh > wrote: > > Now your version numbers don’t match. You skip versions without those commits > > Your history is su

Re: [Bioc-devel] git help

2018-01-08 Thread Kevin Horan
Nitesh, Sorry, just saw your email now. You can go ahead and make those changes. Thanks for all your help. Kevin On 01/07/2018 11:22 AM, Turaga, Nitesh wrote: Hi Kevin, One last message, give me a green light to fix your repository once you have had a chance to see my emails. Best,

Re: [Bioc-devel] git help

2018-01-09 Thread Turaga, Nitesh
Hi Kevin, Your repository should now be fixed. Please re-clone your repository. Best, Nitesh > On Jan 8, 2018, at 8:39 PM, Kevin Horan wrote: > > Nitesh, > >Sorry, just saw your email now. You can go ahead and make those changes. > Thanks for all your help. > > Kevin > > > On 01/07

Re: [Bioc-devel] git help

2018-01-09 Thread Kevin Horan
Nitesh,   I have re-cloned it, everything looks good. Thanks for your help. Can you please make sure that the duplicate commit check has been re-enabled for this repo? It was previously disabled. Kevin On 01/09/2018 10:03 AM, Turaga, Nitesh wrote: Hi Kevin, Your repository should now be