Use bond command
bond atom1, atom2
once you do that, any subsequent line and stick renderings will connect
the atom1 and atom2 (you can right-click on the corresponding atom to
see their full string representation). I assume you are trying to do
something like this
http://tinyurl.com/y2cdezj
I
I am sorry for sending that blank email earlier.
Hussain,
A good
way to do that is to use the pymol distance measuring wizard. It draws a
dotted line between the atoms, and writes out the distance in numbers. You
can hide the numbers and leave the dotted line behind.
ganesh
On Fri,
16 Ap
On Fri, 16 Apr 2010 14:31:02 +0530, Hussain Bhukyagps wrote:
Hi!
their is no connection between the metal and ligand in my pdb..
how
can i generate bonds between them using pymol..??
by the way the distance
between ligands and metal is 1.8-2.0 Ao...??
Hussain
Send free SMS to
your Fr
Hussain Bhukyagps wrote:
Hi!
their is no connection between the metal and ligand in my pdb..
how can i generate bonds between them using pymol..??
by the way the distance between ligands and metal is 1.8-2.0 Ao...??
Hussain
Hi,
What about specifying the bonds with CONECT records in the PDB
Hi!
their is no connection between the metal and ligand in my pdb..
how can i generate bonds between them using pymol..??
by the way the distance between ligands and metal is 1.8-2.0 Ao...??
Hussain
Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download
Now! http://messen
Hi!
their is no connection between the metal and ligand in my pdb..
how can i generate bonds between them using pymol..??
by the way the distance between ligands and metal is 1.8-2.0 Ao...??
Hussain
Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download
Now! http://me