[COOT] OS X coot-0.6-pre-1-revision-1876 - minor bug

2009-02-25 Thread Scott Classen
I just upgraded via fink and now in the Display Manager I am unable to chose which map to bind to the scroll wheel. I can properly bind using the HID-->ScrollWheel-->Attach scroll wheel to which map? pulldown, but not from the radio button in the Display Manager window. Thanks, Scott

Re: [COOT] python or scheme?

2009-02-25 Thread Judit Debreczeni
2009/2/25 Frank von Delft : > I'm totally not with Paul on this one (is scheme object-oriented???), and > eternally grateful to him and Bernhard for implementing python scripting. I think that the point was that scheme is not imperative and not particularly object-oriented (but allows both). >  

Re: [COOT] python or scheme?

2009-02-25 Thread Alastair Fyfe
my nomination for "Most Useful Improvement to the Reference Manual" would be a verbosity setting that emitted traces to the console window on invocation of each function for which a scriptable wrapper existed (basically being able to follow all interpreter to implementation transitions). Curren

Re: [COOT] python or scheme?

2009-02-25 Thread Frank von Delft
I'm totally not with Paul on this one (is scheme object-oriented???), and eternally grateful to him and Bernhard for implementing python scripting. Once you understand how python fits, it's spectacularly powerful. If you want a list of all commands available in the python interpreter -- some

Re: [COOT] python or scheme?

2009-02-25 Thread Paul Emsley
Markus Dehnhardt wrote: > Dear cooters, > > I am new to coot, but I have already discovered how powerful > extensions and key bindings can be. My question is quite simple: if > I want to generate my own extension or keybinding, which scripting > language is better suited? I am not very familiar w

[COOT] python or scheme

2009-02-25 Thread Markus Dehnhardt
Dear cooters, I am new to coot, but I have already discovered how powerful extensions and key bindings can be. My question is quite simple: if I want to generate my own extension or keybinding, which scripting language is better suited? I am not very familiar with either but willing to experiment.

Re: [COOT] Stereo projection with Coot

2009-02-25 Thread Schubert, Carsten [PRDUS]
Paul, Yes, the images appear "inside-out" or "back to front". I think we are talking about the same thing. It has to do with the images being retarded by one frame due to some latencies in the projector, which creates this out-of-sync condition. They mention this on their website. I'll test th

Re: [COOT] Stereo projection with Coot

2009-02-25 Thread Paul Emsley
Schubert, Carsten [PRDUS] wrote: Yep it does. On linux there may be issues, because the drivers may or may not support swap-eyes. The problem is that the images are out of sync with the glasses, or to be more precise, the left image is displayed when the right shutter on the glasses is open. T

Re: [COOT] Stereo projection with Coot

2009-02-25 Thread Schubert, Carsten [PRDUS]
Yep it does. On linux there may be issues, because the drivers may or may not support swap-eyes. The problem is that the images are out of sync with the glasses, or to be more precise, the left image is displayed when the right shutter on the glasses is open. That was the case with the version w

[COOT] Stereo projection with Coot

2009-02-25 Thread Evan Kantrowitz
Does anyone know if Coot will work with the DepthQ 3D projector (www.depthq.com) and an appropriate NVIDIA graphics card, such as the FX3700?

Re: [COOT] Key-binding for changing active map/molecule color

2009-02-25 Thread Victor Alves
Dear Paul and Judit Thank you so much! Its a pleasure doing business with you :-) Victor - Victor Alves, DVM, PhD Auxilliary Professor Veterinary Medicine Faculty - UTL Lisbon, Portugal Quoting Paul Emsley : Hi Victor, First, to make the ne

Re: [COOT] Export residue density fit values to file

2009-02-25 Thread Paul Emsley
Paul Emsley wrote: Sander Nabuurs wrote: Dear all, Is there a way in Coot to export the Residue Density Fit values as calculated by the Validate > Density fit analysis to a text file? Basically a simple output with residue number and density fit value would suffice. I've been looking into th

Re: [COOT] Key-binding for changing active map/molecule color

2009-02-25 Thread Judit Debreczeni
2009/2/24 Victor Alves : > Hi > > I have looked at the reference manual and can't seem to find a way to > fulfill my desire to change colors of the active map or molecule at > key-press. > > All the commands I found use "imol" which means you have to know the exact > number. If you're launching Ref

Re: [COOT] Key-binding for changing active map/molecule color

2009-02-25 Thread Paul Emsley
Victor Alves wrote: Hi I have looked at the reference manual and can't seem to find a way to fulfill my desire to change colors of the active map or molecule at key-press. All the commands I found use "imol" which means you have to know the exact number. If you're launching Refmac from wit

Re: [COOT] Export residue density fit values to file

2009-02-25 Thread Paul Emsley
Sander Nabuurs wrote: Dear all, Is there a way in Coot to export the Residue Density Fit values as calculated by the Validate > Density fit analysis to a text file? Basically a simple output with residue number and density fit value would suffice. I've been looking into the different scripting

[COOT] Export residue density fit values to file

2009-02-25 Thread Sander Nabuurs
Dear all, Is there a way in Coot to export the Residue Density Fit values as calculated by the Validate > Density fit analysis to a text file? Basically a simple output with residue number and density fit value would suffice. I've been looking into the different scripting possibilities of Coot, b