[PathwayCommons/factoid] 83ee7c: Fixed the issues in id mapping feature (#1087)

2022-10-06 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 83ee7ce6696a8b05ba5d68c9b056ba45a018fd1b https://github.com/PathwayCommons/factoid/commit/83ee7ce6696a8b05ba5d68c9b056ba45a018fd1b Author: metincansiper Date: 2022-10-06 (Thu, 06 Oct 2022) C

[PathwayCommons/factoid] e4f83a: Included the updates in package-lock.json file

2022-10-05 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/complex_id_mapping_fix Home: https://github.com/PathwayCommons/factoid Commit: e4f83af0478222f0fc85619d2fce71382dab2b6b https://github.com/PathwayCommons/factoid/commit/e4f83af0478222f0fc85619d2fce71382dab2b6b Author: metincansiper Date: 2022-10-05 (Wed, 05

[PathwayCommons/factoid] a29df4: Further fixes for id mapping issue

2022-10-05 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/complex_id_mapping_fix Home: https://github.com/PathwayCommons/factoid Commit: a29df4651e6ae347cafbb8885d44b5e56906bcf3 https://github.com/PathwayCommons/factoid/commit/a29df4651e6ae347cafbb8885d44b5e56906bcf3 Author: metincansiper Date: 2022-10-05 (Wed, 05

[PathwayCommons/factoid] 901e62: Working on fixing uniprot id mapping issue

2022-10-04 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/complex_id_mapping_fix Home: https://github.com/PathwayCommons/factoid Commit: 901e622fab6722725d277fa4ea1f49bbef1a48e4 https://github.com/PathwayCommons/factoid/commit/901e622fab6722725d277fa4ea1f49bbef1a48e4 Author: metincansiper Date: 2022-10-04 (Tue, 04

[PathwayCommons/factoid] 75f84d: Supplement db improvements (#940)

2021-03-23 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 75f84d474e4237d7d5af7ddbdc9d1908f6d78610 https://github.com/PathwayCommons/factoid/commit/75f84d474e4237d7d5af7ddbdc9d1908f6d78610 Author: metincansiper Date: 2021-03-23 (Tue, 23 Mar 2021) C

[PathwayCommons/factoid] 817a30: Delete the secret from database while removing the...

2021-03-22 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 817a3037586a5ea1c9cea92c6283338d8dc0e167 https://github.com/PathwayCommons/factoid/commit/817a3037586a5ea1c9cea92c6283338d8dc0e167 Author: metincansiper Date: 2021-03-22 (Mon, 22 Ma

[PathwayCommons/factoid] 7c41e0: Call deleteTableRows function instead of trashing ...

2021-03-22 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 7c41e0613c12a6e58ab266f4efd9acccb8a4bf76 https://github.com/PathwayCommons/factoid/commit/7c41e0613c12a6e58ab266f4efd9acccb8a4bf76 Author: metincansiper Date: 2021-03-22 (Mon, 22 Ma

[PathwayCommons/factoid] 15a25a: Skip the interaction when grounding search returns...

2021-03-22 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 15a25ae2aace6dd74a2b7ce8736cb286984f52e3 https://github.com/PathwayCommons/factoid/commit/15a25ae2aace6dd74a2b7ce8736cb286984f52e3 Author: metincansiper Date: 2021-03-22 (Mon, 22 Ma

[PathwayCommons/factoid] 5c4733: Handle related paper process through priority queu...

2021-03-08 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 5c4733e29f24fd6ea233e587613e8f1e6699e363 https://github.com/PathwayCommons/factoid/commit/5c4733e29f24fd6ea233e587613e8f1e6699e363 Author: metincansiper Date: 2021-03-08 (Mon, 08 Ma

[PathwayCommons/factoid] aa0d25: Control admin email(which is subject to change) fr...

2021-02-25 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: aa0d25a203d6fe7c147b7c72ba83f34990e8f018 https://github.com/PathwayCommons/factoid/commit/aa0d25a203d6fe7c147b7c72ba83f34990e8f018 Author: metincansiper Date: 2021-02-25 (Thu, 25 Fe

[PathwayCommons/factoid] 935597: Single ORCID query for each paper (#941)

2021-02-25 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 93559736585be77557b1508944b7b80d9be2d5d8 https://github.com/PathwayCommons/factoid/commit/93559736585be77557b1508944b7b80d9be2d5d8 Author: metincansiper Date: 2021-02-25 (Thu, 25 Feb 2021) C

[PathwayCommons/factoid] bc7e03: Consider complex transformation for invalid intera...

2021-02-24 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: bc7e0378637628379038592ee3222e4e8c19ae74 https://github.com/PathwayCommons/factoid/commit/bc7e0378637628379038592ee3222e4e8c19ae74 Author: metincansiper Date: 2021-01-14 (Thu, 14 Ja

[PathwayCommons/factoid] dacfac: fixed lint error

2021-02-23 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/orcid-query-update Home: https://github.com/PathwayCommons/factoid Commit: dacfacb2eb7c156e006d950301e3f2016b97922d https://github.com/PathwayCommons/factoid/commit/dacfacb2eb7c156e006d950301e3f2016b97922d Author: metincansiper Date: 2021-02-23 (Tue, 23 Feb

[PathwayCommons/factoid] a911ac: Query orcid uri for the whole paper and pull the u...

2021-02-23 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/orcid-query-update Home: https://github.com/PathwayCommons/factoid Commit: a911acfb33a574cb331dca90301ccde01bba64f3 https://github.com/PathwayCommons/factoid/commit/a911acfb33a574cb331dca90301ccde01bba64f3 Author: metincansiper Date: 2021-02-23 (Tue, 23 Feb

[PathwayCommons/factoid] 7ed8b1: Add api/document/from-url end point to add new doc...

2021-02-22 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 7ed8b17a5ad2a01efa23c45be75ad9e510317e55 https://github.com/PathwayCommons/factoid/commit/7ed8b17a5ad2a01efa23c45be75ad9e510317e55 Author: metincansiper Date: 2021-02-22 (Mon, 22 Fe

[PathwayCommons/factoid] 7483e3: Handle the case where response is null for fetch r...

2021-02-17 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 7483e32e174ebc6c6127838848bdf2e7da14f5b1 https://github.com/PathwayCommons/factoid/commit/7483e32e174ebc6c6127838848bdf2e7da14f5b1 Author: metincansiper Date: 2021-02-17 (Wed, 17 Fe

[PathwayCommons/factoid] d0cab1: While loading documents from biopax file skip the ...

2021-02-17 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: d0cab11674c892a853cb75e6bbb699a63d31a720 https://github.com/PathwayCommons/factoid/commit/d0cab11674c892a853cb75e6bbb699a63d31a720 Author: metincansiper Date: 2021-02-17 (Wed, 17 Fe

[PathwayCommons/factoid] 9f340b: Fix too many request issue of indra queries

2021-02-16 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: 9f340b235f7c4bc648e3fbcd7332fbe455cb3353 https://github.com/PathwayCommons/factoid/commit/9f340b235f7c4bc648e3fbcd7332fbe455cb3353 Author: metincansiper Date: 2021-02-16 (Tue, 16 Fe

[PathwayCommons/factoid] c4a910: Removed a conditional console.log statement that w...

2021-01-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: c4a910c88c00f47f8a5105ff72ba58222d7f5c9f https://github.com/PathwayCommons/factoid/commit/c4a910c88c00f47f8a5105ff72ba58222d7f5c9f Author: metincansiper Date: 2021-01-15 (Fri, 15 Ja

[PathwayCommons/factoid] 0c54a2: Added pathway id parameter to be consumed in facto...

2021-01-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 0c54a286d83d1fc85a04ca97a23520f84062 https://github.com/PathwayCommons/factoid/commit/0c54a286d83d1fc85a04ca97a23520f84062 Author: metincansiper Date: 2021-01-15 (Fri, 15 Jan 2021) C

[PathwayCommons/factoid] e89182: Added pathway id parameter to be consumed in facto...

2021-01-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/bp_template_docid Home: https://github.com/PathwayCommons/factoid Commit: e89182de2b92fd562ed6f8f659b16486734f8eab https://github.com/PathwayCommons/factoid/commit/e89182de2b92fd562ed6f8f659b16486734f8eab Author: metincansiper Date: 2021-01-14 (Thu, 14 Jan 2

[PathwayCommons/factoid] bc7e03: Consider complex transformation for invalid intera...

2021-01-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: bc7e0378637628379038592ee3222e4e8c19ae74 https://github.com/PathwayCommons/factoid/commit/bc7e0378637628379038592ee3222e4e8c19ae74 Author: metincansiper Date: 2021-01-14 (Thu, 14 Jan 2021) C

[PathwayCommons/factoid] c22e74: Use only supported organisms while searching groun...

2021-01-13 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/supplement_db_filter Home: https://github.com/PathwayCommons/factoid Commit: c22e74aff53956b32fbda7f507eea7b97db93069 https://github.com/PathwayCommons/factoid/commit/c22e74aff53956b32fbda7f507eea7b97db93069 Author: metincansiper Date: 2021-01-13 (Wed, 13 Ja

[PathwayCommons/factoid] ce845b: Consider complex transformation for invalid intera...

2021-01-06 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/invalid_complex_fix Home: https://github.com/PathwayCommons/factoid Commit: ce845bdb8e2c4bf56813d8911f9f3191a097 https://github.com/PathwayCommons/factoid/commit/ce845bdb8e2c4bf56813d8911f9f3191a097 Author: metincansiper Date: 2021-01-06 (Wed, 06 Jan

[PathwayCommons/factoid] 081742: AuthorProfiles: Provide error handling, fallback (...

2021-01-05 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/author_profiles_error Home: https://github.com/PathwayCommons/factoid Commit: 081742857525371420174f70c5702bfc979ca992 https://github.com/PathwayCommons/factoid/commit/081742857525371420174f70c5702bfc979ca992 Author: metincansiper Date: 2021-01-05 (Tue, 05 J

[PathwayCommons/factoid] 3fb0b5: Refactored RequestForm as a reusable component. (#...

2020-12-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 3fb0b53f2a9433a511786c2f5797789aa082eb65 https://github.com/PathwayCommons/factoid/commit/3fb0b53f2a9433a511786c2f5797789aa082eb65 Author: metincansiper Date: 2020-12-14 (Mon, 14 Dec 2020) C

[PathwayCommons/factoid] 6d4344: Reused request form around the editor title.

2020-12-11 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: 6d434488f756826389492a78d829b66c408258d2 https://github.com/PathwayCommons/factoid/commit/6d434488f756826389492a78d829b66c408258d2 Author: metincansiper Date: 2020-12-11 (Fri, 11 Dec 2

[PathwayCommons/factoid] 57a353: Set provided.name field instead of provided.author...

2020-12-09 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: 57a3535cdc79dde3d5fd131f376a089dc81ada5d https://github.com/PathwayCommons/factoid/commit/57a3535cdc79dde3d5fd131f376a089dc81ada5d Author: metincansiper Date: 2020-12-09 (Wed, 09 Dec 2

[PathwayCommons/factoid] 157b31: Fix the opposite logic of the parameter determinin...

2020-12-08 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: 157b3158f5c1e4807bc75b23428d2df4c7077dd8 https://github.com/PathwayCommons/factoid/commit/157b3158f5c1e4807bc75b23428d2df4c7077dd8 Author: metincansiper Date: 2020-12-08 (Tue, 08 Dec 2

[PathwayCommons/factoid] 4b2c36: Add author name to the provided fields of a document.

2020-12-08 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: 4b2c3667d738e9d0ee8a83ca0f90c230cd517ec0 https://github.com/PathwayCommons/factoid/commit/4b2c3667d738e9d0ee8a83ca0f90c230cd517ec0 Author: metincansiper Date: 2020-12-08 (Tue, 08 Dec 2

[PathwayCommons/factoid] bd3f4a: Added author name field to request form.

2020-12-07 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: bd3f4afb216a6c5e7671b2d4c0ed2e518ab6841e https://github.com/PathwayCommons/factoid/commit/bd3f4afb216a6c5e7671b2d4c0ed2e518ab6841e Author: metincansiper Date: 2020-12-07 (Mon, 07 Dec 2

[PathwayCommons/factoid] dd0d76: Working on refactoring RequestForm component.

2020-12-04 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/post_article_info Home: https://github.com/PathwayCommons/factoid Commit: dd0d7600b6b9a9256549ff979712339b7a90ce0b https://github.com/PathwayCommons/factoid/commit/dd0d7600b6b9a9256549ff979712339b7a90ce0b Author: metincansiper Date: 2020-12-04 (Fri, 04 Dec 2

[PathwayCommons/factoid] 678f7e: In summary page use the old way of showing author ...

2020-12-02 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/author_page_link Home: https://github.com/PathwayCommons/factoid Commit: 678f7e5dedb0b1efcabb501c96b531a3474f79ea https://github.com/PathwayCommons/factoid/commit/678f7e5dedb0b1efcabb501c96b531a3474f79ea Author: metincansiper Date: 2020-12-02 (Wed, 02 Dec 20

[PathwayCommons/factoid] fdf4a3: Query orcid urls of authors on server side.

2020-11-30 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/author_page_link Home: https://github.com/PathwayCommons/factoid Commit: fdf4a3e05f79d98cf187fcfa4f4e528b336b2b59 https://github.com/PathwayCommons/factoid/commit/fdf4a3e05f79d98cf187fcfa4f4e528b336b2b59 Author: metincansiper Date: 2020-11-30 (Mon, 30 Nov 20

[PathwayCommons/factoid] 52086e: Automatic connection of researcher profiles #907

2020-11-25 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/author_page_link Home: https://github.com/PathwayCommons/factoid Commit: 52086e53df7d8398e47a889ec491c1c96fc2da9d https://github.com/PathwayCommons/factoid/commit/52086e53df7d8398e47a889ec491c1c96fc2da9d Author: metincansiper Date: 2020-11-25 (Wed, 25 Nov 20

[PathwayCommons/factoid] dc2f32: Added swagger documentation for biopax id mapping ...

2020-11-20 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: dc2f3245fcdd35d81f0733fb5154f9780a9f1447 https://github.com/PathwayCommons/factoid/commit/dc2f3245fcdd35d81f0733fb5154f9780a9f1447 Author: metincansiper Date: 2020-11-20 (Fri, 20 Nov 2

[PathwayCommons/factoid] 12c42a: Use assoc.dbprefix for mapping ids to uniprot ids.

2020-11-19 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: 12c42a885a19d568c9c2345c153730055892d0b7 https://github.com/PathwayCommons/factoid/commit/12c42a885a19d568c9c2345c153730055892d0b7 Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2

[PathwayCommons/factoid] 430310: Provide an admin facility to add articles using bi...

2020-11-19 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: 43031034d872527da5234f455fd74194e4811bb4 https://github.com/PathwayCommons/factoid/commit/43031034d872527da5234f455fd74194e4811bb4 Author: metincansiper Date: 2020-11-18 (Wed, 18 Nov 2

[PathwayCommons/factoid] d2697d: Use a different file name while downloading the bi...

2020-11-19 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: d2697dc0a26fb381d144f80f612791e8da48512b https://github.com/PathwayCommons/factoid/commit/d2697dc0a26fb381d144f80f612791e8da48512b Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2

[PathwayCommons/factoid] 91ebbd: A little code reorganization for mapping ncbi ids ...

2020-11-19 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: 91ebbd154cb96634be666a633a2d5ba361d13bb0 https://github.com/PathwayCommons/factoid/commit/91ebbd154cb96634be666a633a2d5ba361d13bb0 Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2

[PathwayCommons/factoid] 35229b: Query ncbi to uniprot id mappings chunk by chunk.

2020-11-19 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: 35229b1633b4c767e067b07dfcb88822c403fc2b https://github.com/PathwayCommons/factoid/commit/35229b1633b4c767e067b07dfcb88822c403fc2b Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2

[PathwayCommons/factoid] 4f04a1: Extended biopax zip download service with id mappi...

2020-11-18 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/biopax_id_mapping Home: https://github.com/PathwayCommons/factoid Commit: 4f04a1d2839f160d94f2d318902faa21ff57485c https://github.com/PathwayCommons/factoid/commit/4f04a1d2839f160d94f2d318902faa21ff57485c Author: metincansiper Date: 2020-11-18 (Wed, 18 Nov 2

[PathwayCommons/factoid] 430310: Provide an admin facility to add articles using bi...

2020-11-18 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 43031034d872527da5234f455fd74194e4811bb4 https://github.com/PathwayCommons/factoid/commit/43031034d872527da5234f455fd74194e4811bb4 Author: metincansiper Date: 2020-11-18 (Wed, 18 Nov 2020) C

[PathwayCommons/factoid] 9f0c34: A queick bug fix to set the elements paramater to ...

2020-11-16 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 9f0c34f2ae74d8338a69c07ccf678ab9561d6d7c https://github.com/PathwayCommons/factoid/commit/9f0c34f2ae74d8338a69c07ccf678ab9561d6d7c Author: metincansiper Date: 2020-11-16 (Mon, 16 Nov 2020) C

[PathwayCommons/factoid] 4b70ba: Take into account `lastEditedDate` in the document...

2020-11-16 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 4b70bad414ba3f9c9d7cf1bb3bdc536e6d1ec984 https://github.com/PathwayCommons/factoid/commit/4b70bad414ba3f9c9d7cf1bb3bdc536e6d1ec984 Author: Max Franz Date: 2020-10-08 (Thu, 08 Oct 2020) Chang

[PathwayCommons/factoid] d67ad3: Mark novel interactios.

2020-11-10 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/email-rel-pprs Home: https://github.com/PathwayCommons/factoid Commit: d67ad38f17f94cbaaf713bdba36ea696fae9737d https://github.com/PathwayCommons/factoid/commit/d67ad38f17f94cbaaf713bdba36ea696fae9737d Author: metincansiper Date: 2020-11-09 (Mon, 09 Nov 2020

[PathwayCommons/factoid] 41b4bf: Set the default novel value of interactions as false.

2020-11-10 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/novel_intn Home: https://github.com/PathwayCommons/factoid Commit: 41b4bfe066fa22338b40993d8c5e5d9f5ebbae2e https://github.com/PathwayCommons/factoid/commit/41b4bfe066fa22338b40993d8c5e5d9f5ebbae2e Author: metincansiper Date: 2020-11-10 (Tue, 10 Nov 2020)

[PathwayCommons/factoid] d67ad3: Mark novel interactios.

2020-11-09 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/novel_intn Home: https://github.com/PathwayCommons/factoid Commit: d67ad38f17f94cbaaf713bdba36ea696fae9737d https://github.com/PathwayCommons/factoid/commit/d67ad38f17f94cbaaf713bdba36ea696fae9737d Author: metincansiper Date: 2020-11-09 (Mon, 09 Nov 2020)

[PathwayCommons/factoid] d60bcd: Consider other databases than uniprot while ground...

2020-11-03 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: d60bcd22bea7f580b6eae6b27d05b2cb94116caf https://github.com/PathwayCommons/factoid/commit/d60bcd22bea7f580b6eae6b27d05b2cb94116caf Author: metincansiper Date: 2020-11-03 (Tue, 03 Nov 2020) C

[PathwayCommons/factoid] c5160e: Use uniprot id while grounding entities coming fro...

2020-10-29 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: c5160ec489eb41f3bd5bc4e7f614dc7a86f27b7f https://github.com/PathwayCommons/factoid/commit/c5160ec489eb41f3bd5bc4e7f614dc7a86f27b7f Author: metincansiper Date: 2020-10-29 (Thu, 29 Oct 2020) C

[PathwayCommons/factoid] d378c7: During bulk export skip the files where the conver...

2020-10-27 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/zip_error_handle Home: https://github.com/PathwayCommons/factoid Commit: d378c77b98dbb17b610fb8d7cd469d05b6f5d9b6 https://github.com/PathwayCommons/factoid/commit/d378c77b98dbb17b610fb8d7cd469d05b6f5d9b6 Author: metincansiper Date: 2020-10-27 (Tue, 27 Oct 20

[PathwayCommons/factoid] 1c1a22: Fixed a typo in effect of deubiquitination interac...

2020-10-16 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/deubiquitination_typo Home: https://github.com/PathwayCommons/factoid Commit: 1c1a2292dd05b344a5e55a9b848968c0ed081c3a https://github.com/PathwayCommons/factoid/commit/1c1a2292dd05b344a5e55a9b848968c0ed081c3a Author: metincansiper Date: 2020-10-16 (Fri, 16 O

[PathwayCommons/factoid] 98cdbe: Set the source of documents as either 'admin' or 'pc'

2020-10-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 98cdbe12c915b43a19ca65965115d6cb81661cfe https://github.com/PathwayCommons/factoid/commit/98cdbe12c915b43a19ca65965115d6cb81661cfe Author: metincansiper Date: 2020-10-15 (Thu, 15 Oct 2020) C

[PathwayCommons/factoid] e87409: Fixed linting errors

2020-10-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: e874092f05950b5a98a4e831ea9da224555a3933 https://github.com/PathwayCommons/factoid/commit/e874092f05950b5a98a4e831ea9da224555a3933 Author: metincansiper Date: 2020-10-15 (Thu, 15 Oct 2020) C

[PathwayCommons/factoid] 81bf82: Skip emailing step for multiple article creations.

2020-10-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 81bf82e4663c2460120b2e563aa5ca2de5d299f4 https://github.com/PathwayCommons/factoid/commit/81bf82e4663c2460120b2e563aa5ca2de5d299f4 Author: metincansiper Date: 2020-10-15 (Thu, 15 Oct 2020) C

[PathwayCommons/factoid] af3ca6: A quick fix

2020-10-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: af3ca65b791dd802df4551ca373a05ca9ed5c0d0 https://github.com/PathwayCommons/factoid/commit/af3ca65b791dd802df4551ca373a05ca9ed5c0d0 Author: metincansiper Date: 2020-10-15 (Thu, 15 Oct 2020) C

[PathwayCommons/factoid] eb1564: Updated the non-exising email address specified fo...

2020-10-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: eb1564d801195107c728905d90b8d1475bae837a https://github.com/PathwayCommons/factoid/commit/eb1564d801195107c728905d90b8d1475bae837a Author: metincansiper Date: 2020-10-14 (Wed, 14 Oct 2020) C

[PathwayCommons/factoid] 2f0082: complete the entities created through biopax files

2020-10-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 2f0082d64cc4343fd8f17d69e8ccf05d46391071 https://github.com/PathwayCommons/factoid/commit/2f0082d64cc4343fd8f17d69e8ccf05d46391071 Author: metincansiper Date: 2020-10-14 (Wed, 14 Oct 2020) C

[PathwayCommons/factoid] 815275: Fix linting error

2020-10-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 81527567520f41c68187fec7e70868a3032c5ebd https://github.com/PathwayCommons/factoid/commit/81527567520f41c68187fec7e70868a3032c5ebd Author: metincansiper Date: 2020-10-14 (Wed, 14 Oct 2020) C

[PathwayCommons/factoid] e2f26c: Bug fixes for creating multiple articles

2020-10-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: e2f26c485b0b63bbddefca6cf812e8da15342c23 https://github.com/PathwayCommons/factoid/commit/e2f26c485b0b63bbddefca6cf812e8da15342c23 Author: metincansiper Date: 2020-10-14 (Wed, 14 Oct 2020) C

[PathwayCommons/factoid] d5835c: Handle association of elements created through bio...

2020-10-14 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: d5835c9052067153d21f868d1b3b7830d66d4cac https://github.com/PathwayCommons/factoid/commit/d5835c9052067153d21f868d1b3b7830d66d4cac Author: metincansiper Date: 2020-10-14 (Wed, 14 Oct 2020) C

[PathwayCommons/factoid] 295a8f: Improvements for uploading multiple articles throu...

2020-10-13 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 295a8f0fe6224260a799f080aecc424da53af56d https://github.com/PathwayCommons/factoid/commit/295a8f0fe6224260a799f080aecc424da53af56d Author: metincansiper Date: 2020-10-13 (Tue, 13 Oct 2020) C

[PathwayCommons/factoid] 4baaa5: Working on creating multiple documents from bioapa...

2020-10-12 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/pc2_data Home: https://github.com/PathwayCommons/factoid Commit: 4baaa5758e3a1a35657bd79541eb9fe72c36859d https://github.com/PathwayCommons/factoid/commit/4baaa5758e3a1a35657bd79541eb9fe72c36859d Author: metincansiper Date: 2020-10-12 (Mon, 12 Oct 2020) C

[PathwayCommons/factoid] 4da0d6: Exclude junk documents from bulk download #828 (#831)

2020-09-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 4da0d6e95644c883c95f7a497cb877b80efcf537 https://github.com/PathwayCommons/factoid/commit/4da0d6e95644c883c95f7a497cb877b80efcf537 Author: metincansiper Date: 2020-09-15 (Tue, 15 Sep 2020) C

[PathwayCommons/factoid] 4f90c6: In biopax export constantly use citation() and do ...

2020-09-15 Thread 'metincansiper' via cytoscape-cvs
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 4f90c6aa71ae0fae0dd4723ebf4db4e4d853cb11 https://github.com/PathwayCommons/factoid/commit/4f90c6aa71ae0fae0dd4723ebf4db4e4d853cb11 Author: metincansiper Date: 2020-09-15 (Tue, 15 Sep 2020) C