Roberto,
Did you apply for the license via this form? see:
http://surfer.nmr.mgh.harvard.edu/registration.html
Once this is filled-out, and the 'I Agree' button is clicked, it should
instantly email you a license file. Currently, it seems to be working
for others. Perhaps your email applicati
no idea (Oleg?). I do know that we can interchange data pretty well with
Caret though (thanks mainly to David Van Essen's work, not ours :).
Bruce
On Mon, 7 Nov 2005, Mark Pinsk wrote:
I remember Oleg Gusyatin posted some time ago about wanting to make a
macaque parcellation.
Just wondering
I remember Oleg Gusyatin posted some time ago about wanting to make a macaque parcellation.Just wondering if that was ever done, and if so, would it be accessible to users by any chance :) ?I know I can use Caret, but we're all using freesurfer for human data here so I was just wondering.
thx- mark
yes, it is the orientation field I need to set. I found a lossless way
to re-orient my data using another program before passing it to
freesurfer, so I guess I can use that, but I would prefer to do it all
in one step with freesurfer, is the -i{ijk}d method lossless?
Thanks,
Sasha
Disclaimer:
what version of recon-all do you have?
Don Hagler wrote:
When I run recon-all with the -autorecon2-wm flag, my white matter
edits get overwritten, presumably by aseg, even if I use the
-keepwmedits flag. Is that the correct behavior or is this a bug?
If instead of -autorecon2-wm I use -st
When I run recon-all with the -autorecon2-wm flag, my white matter edits get
overwritten, presumably by aseg, even if I use the -keepwmedits flag. Is
that the correct behavior or is this a bug?
If instead of -autorecon2-wm I use -stage2, then the wm is untouched (as
desired). For some reason
Hi Alex,
it depends on your images. What kind of coil were they acquired with? In
general if a volume coil then placing control points in the wm at the base
of the strand at least 1-2mm from the gray/white junction will fix this
without eating into the gray. If you have a surface coil/phased a
Hi,
I was just after some more pointers on using control points. Some gyri are
missed in some of my images, and using control points recovers them, but it
also tends to make the wm surface eat into the grey matter in some regions.
Just wandering if there's anyway to prevent this from happening?
also, what is you SUBJECTS_DIR set to?
On Mon, 7 Nov 2005, Doug Greve wrote:
Looks like MRISwriteCurvature failed. Can you make sure that average/surf/
exists and is writable, and if there is a lh.avg_sulc there that you have
perms to overwrite it?
doug
Jane Aspell wrote:
Hi
I have
Looks like MRISwriteCurvature failed. Can you make sure that
average/surf/ exists and is writable, and if there is a lh.avg_sulc
there that you have perms to overwrite it?
doug
Jane Aspell wrote:
Hi
I have been trying to run make_average_surface but get the error below. Any idea
what
no, it's usually right away. I'll check.
Bruce
On Mon, 7 Nov 2005, Roberto Toro
wrote:
Hi,
I asked (twice, using [EMAIL PROTECTED]) for a license to use
freesurfer the last week and haven't had any answer is this delay normal?
thanks in advance!
roberto
This message has been checked fo
Hi,
I asked (twice, using [EMAIL PROTECTED]) for a license
to use freesurfer the last week and haven't had any answer is
this delay normal?
thanks in advance!
roberto
This message has been checked for viruses but the contents of an attachment
may still contain software viruses, which cou
Hi
I have been trying to run make_average_surface but get the error below. Any idea
what the problem is?
Many thanks,
Jane Aspell
>make_average_surface --subjects jane kader anna
make_average_surface
input subjects: jane kader anna
output subject: ave
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