Hi FreeSurfers,
I’m a very beginner to both the Linux OS and the FreeSurfer program.
After finally setting up the FreeSurfer, I was trying to do recon-all
for my trial subject. But when I ran the “recon-all” command, it
returned with a long error message indicating many commands not found.
Th
Hi Robby,
Thanks for sharing this and making me aware of the update (great that
this one will give you the motion parameters as well!).
So also for me it works now!
Have fun with your tracts of many subjects then :)!
Barbara
On 05/09/2014 09:22, Robby De Pauw wrote:
Hi Anastasia and Barbara
If your label is in diffusion space, then replace the MNI brain with any
volume that's in diffusion space.
On Fri, 5 Sep 2014, Emily Louise Belleau wrote:
> Hi Anastasia,
>
> This would be in diffusion space though. Since I converted all of my seeds to
> diffusion space.
>
> Emily
> __
Hi Anastasia,
This would be in diffusion space though. Since I converted all of my seeds to
diffusion space.
Emily
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Anastasia Yendiki
Sent: Friday, September 05, 2014 11:32 AM
To: Freesurfer sup
To view your label over the MNI average brain:
fslview $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz
your_label_in_MNI_space.nii.gz -l Red
There are no settings, other than choosing a different color for the
label.
On Fri, 5 Sep 2014, Emily Louise Belleau wrote:
> Hi Anastasia,
>
> I am still h
Hi Anastasia,
I am still having a bit of trouble understanding how to properly view my tract
through fsl view.
What is the appropriate underlay to use/settings?
Thanks again for your continued help!
Emily
From: freesurfer-boun...@nmr.mgh.harvard.edu
o
Hi - I still have not been able to apply the field map correction within
tracula. Tracula does not appear to recognize the format of my field maps
in either dicom or nifti formats. However, as a work around I first did the
field map correction outside tracula (using our wrapper script for
epidewarp
Hi Anastasia and Barbara
I updated Tracula and now everything is running fine.
Thx,
Robby
Robby De Pauw, drs.
Ghent University
Department of Physiotherapy and Rehabilitation Sciences
3B3
De Pintelaan 185
B-9000 Ghent
robby.dep...@ugent.be
On 04 Sep 2014, at 22:01, Anastasia Yendiki
wro
