Hi Emalie
tksurfer and tkmedit have been deprecated for a long time. Can you try
using freeview instead?
cheers
Bruce
On Fri, 21 Feb 2020, Emalie McMahon wrote:
External Email - Use Caution
Hello,
I get an error (see below) when opening tksurfer and tkmedit. Is there
anywa
External Email - Use Caution
Hello,
I get an error (see below) when opening tksurfer and tkmedit. Is there anyway
to resolve this?
tksurfer s001 lh inflated
/Applications/freesurfer/tktools/tksurfer.bin: Bad CPU type in executable.
Freesurfer Details:
freesurfer-i386-apple-d
External Email - Use Caution
Dear experts of the freesurfer,
I was trying to create the white matter and pial surfaces of the cerebellum
of the marmoset, based on ultra-high (80um) resolution ex-vivo images.
I manually segment the cerebellum into the white matter and the gray mat
External Email - Use Caution
Hi Martin,
Thanks. This makes a lot of sense. I'll merge my subjects' surface files that
have been registered to fsaverage, then follow the rest of the protocol listed
at https://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels.
One quick
External Email - Use Caution
Dear Developers,
I am planning to run PVT (psychomotor vigilance task) in fMRI using event
related design. This is an extremely simple reaction time task: participant
has to respond to the appeared geometric shape as quickly as possible. The
key featur
External Email - Use Caution
Hi All,
How do you convert the registered file (.lta) into NIfTI format in
PETsurfer.
Thanks,
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/free
External Email - Use Caution
Hi Doug,
Thank you for your replay.
I understood that if I did not specify "--surfreg
my_avg_subject.sphere.reg" mri_preproc was going to use the original file (
sphere.reg), because in the help of mri_preproc it mentions this:
--surfreg SurfReg : d
External Email - Use Caution
Hi,Douglas,
Thanks for your reply! I have changed the classes and the contrast as
your suggestion. But I still met some problem when viewed the results. I still
met the problem when I loaded the sig.mgh file into freeview or qdec. I don't
External Email - Use Caution
Hi,Douglas,
Thanks for your reply! I have changed the classes and the contrast as
your suggestion. But I still met some problem when viewed the results. I still
met the problem when I loaded the sig.mgh file into freeview or qdec. I still
Hi Guillaume,
not sure what is going on. It could be missing permissions or it could
be that the disk is full?
You could also try to drop the --do-label and see if that works.
Best, Martin
On Fri, 2020-02-14 at 10:12 +0100, Guillaume Carey wrote:
>
> Hello everyone,
> I’m currently work
Hi,
looks like someone changed the default python to version 3, and you are
still using a script written for python 2. I think Andrew updated this
recently, so obtaining a newer version of the long_submit_jobs script
from dev may fix this.
Best, Martin
On Tue, 2020-02-11 at 18:03 +, Huang,
Hi Lara,
no, you should not use time point 1 as base.
You need to distinguish between the image processing part and the
statistics post processing analysis (LME). These are two separate
things.
For the image processing in the longitudinal pipeline, we create the
base (=subject template). The
External Email - Use Caution
Dear Freesurfer experts,
I’ve just completed a GLM analysis in Freesurfer and I’d like to be sure that
all the steps I’ve performed are the right ones.
My analysis is looking at age related changes in cortical thickness in one
group of patients, aft
13 matches
Mail list logo