Re: [Freesurfer] QDEC failed due to missing files

, Manish Dalwani wrote: Hello Freesurfers, In the past I have been able to run QDEC v 4.5 on images without any problem. Recently I ran recon-all on some new set of images. I was able to run the regression analyses using command line options. However, when I tried running qdec..it failed and I

[Freesurfer] QDEC failed due to missing files

Hello Freesurfers, In the past I have been able to run QDEC v 4.5 on images without any problem. Recently I ran recon-all on some new set of images. I was able to run the regression analyses using command line options. However, when I tried running qdec..it failed and I get the following

[Freesurfer] Can QDEC do a vertex-wise GM comparison?

Dear Freesurfer developers, Is QDEC GUI toolbox ready at this point to do a vertex-wise GM comparison? Regards Manish Dalwani Instructor Dept. of Psychiatry Univ. of Co Sent from my iPhon ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Can QDEC do a vertex-wise GM comparison?

the --pvr option for mri_glmfit)? No, sorry doug On 01/28/2014 07:21 PM, Manish Dalwani wrote: Dear Freesurfer developers, Is QDEC GUI toolbox ready at this point to do a vertex-wise GM comparison? Regards Manish Dalwani Instructor Dept. of Psychiatry Univ. of Co Sent from my iPhon

Re: [Freesurfer] Help with QDEC error

--fsgd FSGD_CD.fsgd dods --C thickness_CD.mtx --surf fsaverage lh --cortex --glmdir lh.thickness_CD.glmdir    2. The FSGD file (if using one)   3. And the design matrix above From: Manish Dalwani manishdalw...@yahoo.com To: Douglas Greve gr...@nmr.mgh.harvard.edu

Re: [Freesurfer] Help with QDEC error

Hi Nick and Doug,  Can you suggest an alternative way if QDEC is unable to handle a single group?   I would like to run these analyses to address reviewers comments.   Best, Manish From: Douglas Greve gr...@nmr.mgh.harvard.edu To: Manish Dalwani manishdalw

Re: [Freesurfer] Help with QDEC error

: Manish Dalwani manishdalw...@yahoo.com To: Douglas Greve gr...@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 20, 2013 1:26 PM Subject: Re: [Freesurfer] Help with QDEC error Hi Doug,  I was out of town for a conference. Please see my

[Freesurfer] Help with QDEC error

-thickness.mat --C /Applications/freesurfer/subjects/qdec/Untitled/contrasts/lh-Diff-CONTROLS-PATIENTS-Cor-thickness-CD.mat Please advice! Regards, Manish Dalwani Instructor Dept. of Psychiatry University of Colorado___ Freesurfer mailing list

[Freesurfer] Freesurfer error..recon-all fails

help with this issue.  Best Regards, Manish Dalwani recon-all.log Description: Binary data ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail

Re: [Freesurfer] Freesurfer error..recon-all fails

] Freesurfer error..recon-all fails Does the license fileexist? Note it is not called license.txt On 06/04/2013 12:13 PM, Manish Dalwani wrote: Hello Freesurfer's I am working on the MAC OS 10.8 and just recently installed the freesurfer on this server machine. I have checked the permissions

Re: [Freesurfer] Freesurfer error..recon-all fails

Subject: Re: [Freesurfer] Freesurfer error..recon-all fails Does the license fileexist? Note it is not called license.txt On 06/04/2013 12:13 PM, Manish Dalwani wrote: Hello Freesurfer's I am working on the MAC OS 10.8 and just recently installed the freesurfer on this server machine. I

Re: [Freesurfer] Freesurfer error..recon-all fails

To: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, June 4, 2013 10:15 AM Subject: Re: [Freesurfer] Freesurfer error..recon-all fails Does the license fileexist? Note it is not called license.txt On 06/04/2013 12:13 PM, Manish Dalwani wrote: Hello Freesurfer's I am working on the MAC OS 10.8

[Freesurfer] help with this error

Dear Freesurfer's I have been using (a slightly older version) Freesurfer on linux and it works fine. I just recently installed freesurfer on the mac workstation OS X 10.8.1. I get the following error: server:subjects manishdalwani$ cd anat_5214 server:anat_5214 manishdalwani$ recon-all -i

[Freesurfer] SORRY POSTED THE WRONG ERROR..This is the the right one

I need help with this error...I do see the a LICENSE file in the freesurfer directory. -- ERROR: FreeSurfer license file /Applications/freesurfer/license.txt not found.   If you are outside the NMR-Martinos Center,   go to