Thanks!
Just FYI - we applied newer version of NLME from Pierrick Coupé before
running freesurfer and it greatly improved segmentation results.
On Wed, Mar 16, 2016 at 3:47 PM Bruce Fischl
wrote:
> Hi Mojmir
>
> we don't apply mri_nlfilter by default so there is no
Hi Mojmir
we don't apply mri_nlfilter by default so there is no need to turn it
off. You are welcome to try it out. It implement some nonlinear filters
including what is now called nonlocal means as described in this paper:
that's interesting. Is it open source? If so, can you point us at it? Maybe
someone should compare it to the version I wrote 20 years ago :)
On Fri, 18 Mar 2016, Mojmír Vinkler wrote:
Thanks!
Just FYI - we applied newer version of NLME from Pierrick Coupé before
running freesurfer and it
reesurfer@nmr.mgh.harvard.edu>
Betreff: Re: [Freesurfer] Replacing / turning off denoising filter
that's interesting. Is it open source? If so, can you point us at it? Maybe
someone should compare it to the version I wrote 20 years ago :)
On Fri, 18 Mar 2016, Mojmír Vinkler wrote:
> Thanks!
> Jus
list
Betreff: Re: [Freesurfer] Replacing / turning off denoising filter
that's interesting. Is it open source? If so, can you point us at it? Maybe
someone should compare it to the version I wrote 20 years ago :)
On Fri, 18 Mar 2016, Mojmír Vinkler wrote:
> Thanks!
> Just FYI - we a
t; >
> https://sites.google.com/site/pierrickcoupe/softwares/denoising-for-medical
> > -imaging/mri-denoising/mri-denoising-software
> >
> >
> >
> > Best,
> >
> > Falk
> >
> >
> >
> > Von: Bruce Fischl
> > Gesendet: Freitag,
Hi,
I was wondering if it's possible to replace or turn off your denoising
algorithm `mri_nlfilter`. We'd like to try different denoising filters and
compare how they influence segmentation performance. Right now we're
applying filter before running recon-all, but I fear that applying your
filter