Hi Seok,
Try using "--projfac .01" in the surf2vol command.
doug
Seok Lew wrote:
> Thank you !
>
> I successfully projected the pial surface normals in the volume. Now
> I wanted to project the normals in the inner gm boundary voxels (i.e.
> gm boundary voxels with wm). What I tried is scali
Thank you !
I successfully projected the pial surface normals in the volume. Now
I wanted to project the normals in the inner gm boundary voxels (i.e.
gm boundary voxels with wm). What I tried is scaling up the wm
surface by
mris_convert -s 1.01 lh.white lh.white101
and then projected
That is the file created by registering your orig.mgz to the mni152
brain (assuming you are using the 152). You can create this registration
file with the mni152reg script.
doug
Seok Lew wrote:
> Thanks, first of all.
>
> I tried with the following scripts, but ended up with an error. I am
>
Thanks, first of all.
I tried with the following scripts, but ended up with an error. I am
not sure which format or file is required for the --volreg.
#
mri_surf2surf --s FS --hemi lh --sval-nxyz pial --tval ./ttt.mgz
#
mri_surf2vol --surfval ttt.mgz --hemi lh --volreg mri/transforms/
talaira
Try using mri_surf2surf with the --sval-nxyz. The output have 3-frame,
one for each component in the normal. Then use mri_surf2vol to stuff
this back into a volume.
doug
Seok Lew wrote:
> Hello users,
>
> My colleagues and I are trying to create a gray matter electric
> conduction model where
Hello users,
My colleagues and I are trying to create a gray matter electric
conduction model where a preferable conduction direction is aligned
with the normal direction induced from the pial and white surface
normals.
Freesurfer reconstruction already gives pial and white matter surface
