Thanks, first of all. I tried with the following scripts, but ended up with an error. I am not sure which format or file is required for the --volreg.
# mri_surf2surf --s FS --hemi lh --sval-nxyz pial --tval ./ttt.mgz # mri_surf2vol --surfval ttt.mgz --hemi lh --volreg mri/transforms/ talairach.xfm --outvol ooo.mgz --template mri/T1.mgz gdiagno = -1 regio_read_register(): No such file or directory Error reading inplaneres from mri/transforms/talairach.xfm Thanks, Seok On Mar 9, 2011, at 2:00 PM, Douglas N Greve wrote: > Try using mri_surf2surf with the --sval-nxyz. The output have 3- > frame, one for each component in the normal. Then use mri_surf2vol > to stuff this back into a volume. > > doug > > Seok Lew wrote: >> Hello users, >> >> My colleagues and I are trying to create a gray matter electric >> conduction model where a preferable conduction direction is >> aligned with the normal direction induced from the pial and white >> surface normals. >> >> Freesurfer reconstruction already gives pial and white matter >> surface normals and correspondences between them. Now I want to >> have the freesurfer surface normals projected on the mri volumes >> and interpolated for gray matter voxels (regions between the pial >> surface and the white surface), such that each voxel of gray >> matter can have a normal direction. >> >> Is it possible to do the job with freesurfer scripts ? If so, >> what scripts might work for this? >> >> Thanks in advance, >> >> Seok >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > Seok Lew, Ph.D. MEG Core Laboratory Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Harvard Medical School s...@nmr.mgh.harvard.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
