[galaxy-dev] Error in matplotlib

2016-01-19 Thread Shane Kelly
Could anyone shed some light on this error please? (Information from the Galaxy operator here who is having trouble posting) The error is for the dependency “package_matplotlib1_2” The full error information is Name: matplotlib Version: 1.2.1 Type: Package Status: Error Error: File

Re: [galaxy-dev] tool development

2016-01-19 Thread Hans-Rudolf Hotz
Hi Matthias Have you considered "Data Libraries"? A cron job can query your LIMS and use the API to create "Data Libraries". Then the user can select which datasets she/he wants to import. And back to your original question: Yes, it is possible to create interactive tools. Check out the

Re: [galaxy-dev] tool development

2016-01-19 Thread Matthias De Smet
Hi Hans-Rudolf Yes, we have considered using data libraries, but for this particular use case we would prefer an approach like this. Our users are notoriously bad at data management and we would like to limit the amount of data that gets loaded in Galaxy. The networked share does not store all

Re: [galaxy-dev] CEAS error

2016-01-19 Thread Peter Briggs
Hello Philipp I'm assuming this is the 'ceas' tool from the toolshed which is owned by 'pjbriggs' (that is me)? If it is then from what you describe I'm not sure whether this is a problem with the specific tool or a more general issue with Galaxy's tool installation. My own experiences of

Re: [galaxy-dev] python_mysqldb caused zip_safe flag not set

2016-01-19 Thread Peter Briggs
Hello Mic Apologies, I missed your post the first time around - I didn't pick up that it was related to my 'ceas' tool. However the error you reported sounds superficially similar to that reported by Philipp Rather. Did you manage to resolve the problem yourself? If not (and if you're still