Many thanks for all of your guidance Bob -- I've taken your advice about
switching over to Jmol.js and jmolApplet() / jmolScript() ... as you say, I
expect it will save me even more trouble in the future! I've only been
working at this for ~ a week, so I've got a great deal of learning to do
(and
Hi again Tom. (Sorry to be late, the time shift)
1.- Everything in your page (using the files you sent me off-list) works OK
here in local
mode, so the problem as Bob advised must be specific to serving files from the
web server.
Those of us who started with Chime before Jmol have got into the
Thomas Stout wrote:
>
> Ah ha! -- Lots of good information and suggestions there - thank you
> very much!
> One of those was exactly the problem: it turns out that naming the
> script "load.script" OR load_script was problematic. Renaming to
> either "load_script.txt" or "foo" works as expecte
Ah ha! -- Lots of good information and suggestions there - thank you very
much!
One of those was exactly the problem: it turns out that naming the script "
load.script" OR load_script was problematic. Renaming to either
"load_script.txt" or "foo" works as expected! As you suggest, I suspect
there
Thomas Stout wrote:
>
> Thanks very much -- this is getting /more/ confusing! If I add "set
> debugScript; set loglevel 5;" to the script, nothing changes and the
> amount of output to the console does not change (I only get "Script
> completed / Jmol script terminated".
But you also get thos
Thanks very much -- this is getting *more* confusing! If I add "set
debugScript; set loglevel 5;" to the script, nothing changes and the amount
of output to the console does not change (I only get "Script completed /
Jmol script terminated". However, the coordinates DO load, but no other
JMol co
Hi, Thomas, welcome to Jmol world!
I can see no reason for the problem you describe.
Try these:
1.- open the Java console* and see if there is some error there
(*find a coffee cup icon in the taskbar, bottom right of your screen,
right-click on it,
choose "Open Console")
2.- open Jmol console
Tom, welcome! Be sure to let us know if you are using the application or
the applet -- sometimes it makes a difference. The zap command is not
necessary -- it's always executed first as part of the load command. But
it must have been excuted. Everything looks fine there.
Try adding these first
Hi All --
I am *just *getting started with JMol, so I apologize if this is blatently
obvious, but I've run into a bit of strange behavior with scripting the
applet. Is there something particularly "special" about the "load"
command? I am calling out to a script file to load several PDB files, b
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