Hi Daniel,
This problem has been tackled several times, maybe have a look at the
following URLs, it might help you getting started:
http://www.rubor.de/bioinf/tips_python.html#msdist
http://sourceforge.net/mailarchive/message.php?msg_id=2914266
And also dont forget the search feature
The question is: how can I then delete the created MyColor
object? I tried the cmd.delete command, it does not generate
an error but apparently the color is still defined... Any idea?!
Colors can't be undefined, and that would especially be true if an object is
still using a given color,
Hello,
This may be slightly off-topic, but I was wondering whether PyMol
would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used for
structural refinements (minimizations, etc.) elsewhere.
If PyMol cannot do this, is
James,
PyMol would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used
Just hold down ALT/OPTION and type in the peptide sequence. The
numbering will be arbitrary, but at least you'll have something to work
with.
Hi James,
Sounds like you want a homology model type set up, ie generate
coordinates based on a template. Modeller can do this and an easier way
is via the swissmodel
http://swissmodel.expasy.org//SWISS-MODEL.html
If however you want a relatively random structure then pymol _can_ do
this.
Thanks for the prompt responses, Warren and Joe! Works like a charm!
Now, I just wish that my Kensington Expert Mouse could function as a
true three button mouse...is there a keystroke that mimics the third
mouse button?
Thanks again,
james