Re: [spctools-discuss] Issue with MSConvert of TPP v7.0.0.

2024-04-05 Thread 'David Shteynberg' via spctools-discuss
Natchiket, Alternatively to setting the environment PATH, you should be able to run msconvert on the commandline by using the full path to the executable instead, (and remember to include the quotes!) This is the full path on my system, and likely also on yours: "c:\Program Files\ProteoWizard\Prot

Re: [spctools-discuss] Issue with MSConvert of TPP v7.0.0.

2024-04-05 Thread 'David Shteynberg' via spctools-discuss
Hello Nachiket, Thanks for your interest in the TPP! The location where proteowizard is installed on your system is not in your windows system PATH environment variable. Please add the directory where you found msconvert to your PATH environment variable and try running it again. Let us know ho

[spctools-discuss] Issue with MSConvert of TPP v7.0.0.

2024-04-05 Thread Nachiket W
Hello everybody, I've been trying to run MSConvert from the Windows Command Prompt but it keeps giving an error saying 'msconvert' is not recognized as the name of cmdlet. I tried using variations like- 'MSconvert', 'msConvert', 'MSConvert' to no avail. I also tried to look for the applicatio

[spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification

2024-04-05 Thread 'Juergen Bartel' via spctools-discuss
Dear David, to generate my library I have done a couple of steps: 1) modified the file utils.py from seq2ms to contain my modifications: *# C H N O S P# mods = {"ox" : [0,0,0,1,0,0], ## changed this line to enable sulfatase modification prediction se=serine; al=formylglycine-aldehyd; do=f

Re: [spctools-discuss] TPP 7.0.0 Release is now available

2024-04-05 Thread 'Juergen Bartel' via spctools-discuss
Dear David, Thank you for your reply and the offer to help! I will answer in my original post to avoid spaming this announcement too much. Best regards, Juergen David Shteynberg schrieb am Donnerstag, 4. April 2024 um 17:15:02 UTC+2: > Now that I have also read your original message... sorr