Re: [base] Data cube has already been committed
Chad Matsalla wrote: > Greetings All! > > Is there anything that I can so about this error? I'm completely stuck. > I don't really know what a data cube is or how it could have already > been committed. A datacube is a representation of the data in the dynamic database that is used to store analysed data. It is a "cube" because it requires three coordinates to pinpoint data for a spot, the bioassayset, the bioassay and the position. Some parts of the datacube, ie. how positions map to reporters and raw data, can't be modified after the creation of a datacube. I seems like the Base1PluginExecuter is trying to add additional reporter mappings to an already existing data cube and that is why the error happens. We hope to fix this in the next release (2.4.5). /Nicklas - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
[base] Data cube has already been committed
Greetings All! Is there anything that I can so about this error? I'm completely stuck. I don't really know what a data cube is or how it could have already been committed. Do I need to delete the experiment or something? I can't help but wonder if it has something to do with my trashcan problems. Is there some sort of database validator that I can run to test if my databases are consistent? They are large - 10G. Chad Matsalla - This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
[base] Data cube has already been committed
Greetings, I'm running base-2.4.2 on tomcat 6.0.14. I'm running a base1 plugin. When I run it on the commandline on one of the stdin.txt-s that base2 creates it runs successfully and prints nothing to my console. WHen running it in base it generates data, runs, indicates that it's importing data and then hangs for a long time with this in the job's status: Status: Executing: Reading from error stream. After some time I see this in the status: Error: Permission denied: Data cube has already been committed: Data cube[id=24] The exception is this:[1]. Can someone point me in the right direction? I didn't really see much on this in the tickets. Thank you! Chad Matsalla [1] net.sf.basedb.core.PermissionDeniedException: Permission denied: Data cube has already been committed: Data cube[id=21] at net.sf.basedb.core.BioAssaySet.getPositionBatcher(BioAssaySet.java:781) at net.sf.basedb.plugins.Base1PluginExecuter.importData(Base1PluginExecuter.java:1542) at net.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:700) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:89) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:421) at java.lang.Thread.run(Thread.java:595) - This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse012070mrt/direct/01/ ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
