[Bioc-devel] Bioconductor package review

[Lluís Revilla]

Hi,

Recently I was looking how package reviews are done. Specifically those
packages from developers on the Bioconductor team, or listing the
Bioconductor Package Maintainer as the maintainer.

Some of those packages become the backbone of other packages and perhaps
there are some experiences on the reviewing the 50 packages that
Bioconductor is currently maintaining. However, I couldn't find if there
are under the same review process than other packages? Or are there any
other expectations on the review of those packages?

Sorry if this has been described before, I couldn't come up with a good
search term, and didn't find anything on the Package Submission website.
And as a fairly new contributor I don't know how package reviews were done
before github.

Many thanks,

Lluís

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Re: [Bioc-devel] Bioconductor package review

[Martin Morgan]

Core packages go through the same review process as community contributed 
packages, although many of the core packages pre-date the current github review 
process.

Github seems to have been introduced in 2016. Before that we used the roundup 
issue tracker system where packages were uploaded and reviewed by core team 
members. I *think* the review process was public, but it would have been much 
less visible than the current system.

I don't remember when the issue tracker was introduced, or how things were done 
before that.

I think the single package builder (automatic check of submitted packages) was 
introduced during this phase, maybe in the 2012 time frame.

Martin

On 6/9/19, 8:32 AM, "Bioc-devel on behalf of Lluís Revilla" 
 wrote:

Hi,

Recently I was looking how package reviews are done. Specifically those
packages from developers on the Bioconductor team, or listing the
Bioconductor Package Maintainer as the maintainer.

Some of those packages become the backbone of other packages and perhaps
there are some experiences on the reviewing the 50 packages that
Bioconductor is currently maintaining. However, I couldn't find if there
are under the same review process than other packages? Or are there any
other expectations on the review of those packages?

Sorry if this has been described before, I couldn't come up with a good
search term, and didn't find anything on the Package Submission website.
And as a fairly new contributor I don't know how package reviews were done
before github.

Many thanks,

Lluís

[[alternative HTML version deleted]]

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[Bioc-devel] package submission question

[Lily Wang]

Dear Bioconductor Team,

Our group is preparing two R packages for the fall bioconductor release.
One of the packages will depend on the other one. Would it possible to have
both packages included in the fall release? or does one package has to wait
till next Spring?

Thanks very much!

-Lily



Lily Wang

Associate Professor

Department of Public Health Sciences

Dr. John T. Macdonald Foundation

Department of Human Genetics

Miller School of Medicine

University of Miami

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Re: [Bioc-devel] package submission question

[Shepherd, Lori]

Both can be included in the fall release.
Please see 
https://github.com/Bioconductor/Contributions/blob/master/README.md#submitting-related-packages

Get Outlook for Android


From: Bioc-devel  on behalf of Lily Wang 

Sent: Sunday, June 9, 2019 4:38:48 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] package submission question

Dear Bioconductor Team,

Our group is preparing two R packages for the fall bioconductor release.
One of the packages will depend on the other one. Would it possible to have
both packages included in the fall release? or does one package has to wait
till next Spring?

Thanks very much!

-Lily



Lily Wang

Associate Professor

Department of Public Health Sciences

Dr. John T. Macdonald Foundation

Department of Human Genetics

Miller School of Medicine

University of Miami

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Re: [Bioc-devel] package submission question

[Lily Wang]

Great, thanks for the quick response Lori !

-Lily

On Sun, Jun 9, 2019 at 8:24 PM Shepherd, Lori 
wrote:

> Both can be included in the fall release.
> Please see
> https://github.com/Bioconductor/Contributions/blob/master/README.md#submitting-related-packages
>
> Get Outlook for Android 
>
> --
> *From:* Bioc-devel  on behalf of Lily
> Wang 
> *Sent:* Sunday, June 9, 2019 4:38:48 PM
> *To:* bioc-devel@r-project.org
> *Subject:* [Bioc-devel] package submission question
>
> Dear Bioconductor Team,
>
> Our group is preparing two R packages for the fall bioconductor release.
> One of the packages will depend on the other one. Would it possible to have
> both packages included in the fall release? or does one package has to wait
> till next Spring?
>
> Thanks very much!
>
> -Lily
>
> 
>
> Lily Wang
>
> Associate Professor
>
> Department of Public Health Sciences
>
> Dr. John T. Macdonald Foundation
>
> Department of Human Genetics
>
> Miller School of Medicine
>
> University of Miami
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.

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