Re: [Bioc-devel] Rhtslib on arm64

[Martin Grigorov]

Hi Ulrich,

The issue with the LOCK files and folders have been addressed with
https://github.com/Bioconductor/BBS/pull/291
https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/Rhtslib/kjohnson2-install.html
says "This page was generated on 2023-06-02 11:02:20". I guess the issue
will be gone with the next report.

In addition I could say that Rhtslib builds fine on Linux ARM64 -
https://bio-arm.github.io/latest/report/Rhtslib/

Regards,
Martin



On Wed, Jun 7, 2023 at 12:29 PM  wrote:

> Dear Hervé, dear Rhtslib developers, dear BioC core team,
>
> I am regularly checking all BioC check results in order to make sure that I
> do not miss any issues of the four Bioconductor packages that I am
> maintaining. It seems that the ‘podkat’ package in BioC 3.17 release has
> not
> been built for arm64 yet. On the results page
> https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/,
> ‘podkat’
> has been “red” for weeks now. It seems to me that the reason for this is
> that ‘Rhtslib’ does not build either. I have now looked at the results page
> of ‘Rhtslib’
> (https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/Rhtslib/
> )
> and it seems that it is a simple issue with a lock file on the build
> server,
> but not a major problem why the package is not built (who knows, but I
> suppose so). I am therefore asking if anybody is able to resolve that issue
> such that the ‘Rhtslib’ package builds for arm64 and , as a consequence,
> hopefully, my ‘podkat’ package too.
>
> Thanks a lot in advance and best regards,
> Ulrich
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Rhtslib on arm64

[bodenhofer]

Great, Martin, thanks!

Best regards, Ulrich


From: Martin Grigorov  
Sent: Wednesday, June 7, 2023 12:04 PM
To: bodenho...@bioinf.jku.at
Cc: bioc-devel@r-project.org; Hervé Pagès 
Subject: Re: [Bioc-devel] Rhtslib on arm64

Hi Ulrich,

The issue with the LOCK files and folders have been addressed with 
https://github.com/Bioconductor/BBS/pull/291
https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/Rhtslib/kjohnson2-install.html
 says "This page was generated on 2023-06-02 11:02:20". I guess the issue will 
be gone with the next report.

In addition I could say that Rhtslib builds fine on Linux ARM64 - 
https://bio-arm.github.io/latest/report/Rhtslib/

Regards,
Martin



On Wed, Jun 7, 2023 at 12:29 PM  wrote:
Dear Hervé, dear Rhtslib developers, dear BioC core team,

I am regularly checking all BioC check results in order to make sure that I
do not miss any issues of the four Bioconductor packages that I am
maintaining. It seems that the ‘podkat’ package in BioC 3.17 release has not
been built for arm64 yet. On the results page
https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/, ‘podkat’
has been “red” for weeks now. It seems to me that the reason for this is
that ‘Rhtslib’ does not build either. I have now looked at the results page
of ‘Rhtslib’
(https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/Rhtslib/)
and it seems that it is a simple issue with a lock file on the build server,
but not a major problem why the package is not built (who knows, but I
suppose so). I am therefore asking if anybody is able to resolve that issue
such that the ‘Rhtslib’ package builds for arm64 and , as a consequence,
hopefully, my ‘podkat’ package too.

Thanks a lot in advance and best regards,
Ulrich

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[Bioc-devel] Rhtslib on arm64

[bodenhofer]

Dear Hervé, dear Rhtslib developers, dear BioC core team,

I am regularly checking all BioC check results in order to make sure that I
do not miss any issues of the four Bioconductor packages that I am
maintaining. It seems that the ‘podkat’ package in BioC 3.17 release has not
been built for arm64 yet. On the results page
https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/, ‘podkat’
has been “red” for weeks now. It seems to me that the reason for this is
that ‘Rhtslib’ does not build either. I have now looked at the results page
of ‘Rhtslib’
(https://bioconductor.org/checkResults/3.17/bioc-mac-arm64-LATEST/Rhtslib/)
and it seems that it is a simple issue with a lock file on the build server,
but not a major problem why the package is not built (who knows, but I
suppose so). I am therefore asking if anybody is able to resolve that issue
such that the ‘Rhtslib’ package builds for arm64 and , as a consequence,
hopefully, my ‘podkat’ package too.

Thanks a lot in advance and best regards,
Ulrich

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