[Bioc-devel] ClusterJudge problems reported in the build/check

[Adrian Pasculescu]

Hi all,

It seems that Bioconductor multi build/check does NOT use the updated git
of ClusterJudge package.  Here is the error reported:
https://master.bioconductor.org/checkResults/3.12/bioc-LATEST/ClusterJudge/malbec1-checksrc.html

However I fixed the error about a month ago and pushed the changes. The
small changes are in R/download_Yeast_GO_mapping.R and simply truncates the
number of columns in a delimited file that is downloaded:

I tested and it works fine after a fresh clone from bioconductor:
$git clone g...@git.bioconductor.org:packages/ClusterJudge.git
git remote -v

origin g...@git.bioconductor.org:packages/ClusterJudge.git (fetch)

origin g...@git.bioconductor.org:packages/ClusterJudge.git (push)

upstream g...@git.bioconductor.org:packages/ClusterJudge (fetch)

upstream g...@git.bioconductor.org:packages/ClusterJudge (push)


The changes are also present in https://github.com/apasculescu/ClusterJudge
however they don't seem to be pulled by BioConductor when it runs the multi
build/check. Where is Bioconductor pulling the ClusterJudge code from?

Many thanks,
Adrian Pasculescu

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[Bioc-devel] Transfer Maintainership of a Package ClusterJudge

[Adrian Pasculescu]

Hi ,

I am the original maintainer of the ClusterJudge but my original email
address (pascule...@lunenfeld.ca) is no longer valid.
I need to continue maintaining the package under the new email address:
a.pascule...@gmail.com
I created a new github repo: https://github.com/apasculescu/ClusterJudge
However I cannot update the package as I am not recognized by bioconductor.

I cannot re-register to bioconductor under the new email address since the
original DESCRIPTION of the ClusterJudge (and the bioconductor database of
maintainers) contains my old and inactive email address.

Can you please help and indicate what are my next steps,
Many thanks,
Adrian Pasculescu
(see also some previous email related to the subject)

-- Forwarded message -
De : Hervé Pagès 
Date: mer. 15 avr. 2020 à 22:29
Subject: Re: ClusterJudge bioconductor package
To: Adrian Pasculescu 
Cc: Frederick Roth 


Hi Adrian,

You're looking at the wrong place. The web hook is for triggering builds
during the package submission process. We're way past this ;-)

One the package is accepted and added to git.bioconductor.org, you need
to push your changes to git.bioconductor.org in addition to pushing them
to your GitHub repo. See our documentation here
https://bioconductor.org/developers/how-to/git/ for the details.

Any further question related to how to maintain/update your package
should be asked on the bioc-devel mailing list.

Thanks,
H.

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