Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
c85afb9d by Steffen Möller at 2019-08-22T12:55:26Z
Update python- to python3, some more recent packages
Some maybe better show up only on bio-dev
- - - - -
1 changed file:
- tasks/bio
Changes:
=
tasks/bio
=
@@ -50,7 +50,7 @@ Recommends: boxshade, fastx-toolkit, gff2aplot, muscle,
sim4, sibsim4, tabix
Suggest: tophat-recondition
-Recommends: maqview
+Recommends: maqview
Recommends: blasr
@@ -258,8 +258,6 @@ Recommends: acedb-other
Recommends: blixem, dotter, belvu
-Recommends: python-cogent
-
Recommends: paml
Recommends: velvetoptimiser
@@ -916,25 +914,33 @@ Recommends: psipred
Recommends: pssh2
-Recommends: python3-pybel
+Suggests: python3-alignlib
+
+Recommends: python3-cogent
Recommends: pycorrfit
Recommends: pyscanfcs
-Recommends: python3-deeptools
+Recommends: python3-deeptools, python3-deeptoolsintervals
Recommends: python3-geneimpacts
Recommends: python3-gffutils
+Suggests: python3-loompy
+
+Recommends: python3-pybel
+
+Suggests: python3-py2bit
+
Recommends: python3-pybedtools
Recommends: python3-sqt
-Recommends: python-reaper
+Recommends: python3-reaper
-Recommends: python-treetime
+Recommends: python3-treetime
Recommends: qcumber
@@ -1243,9 +1249,9 @@ Recommends: r-cran-tcr, r-cran-tigger, r-cran-alakazam,
r-cran-shazam, igor, r-c
Recommends: ncbi-igblast
-Suggests: python-pyflow
+Suggests: python3-pyflow
-Recommends: pigx-rnaseq
+Recommends: pigx-rnaseq, pigx-scrnaseq
X-Mark: The information below needs to be checked whether it can be obtained
from Vcs or needs to stay here
@@ -2598,7 +2604,7 @@ Pkg-Description: annotate genetic variants detected from
diverse genomes
"variants reduction" procedure, making it practical to handle hundreds
of human genomes in a day.
-Recommends: python-orange
+Recommends: python3-orange
License: GPLv3
Homepage: http://orange.biolab.si/
Pkg-URL: http://orange.biolab.si/debian/
View it on GitLab:
https://salsa.debian.org/blends-team/med/commit/c85afb9d56a3ff1de5d54ac94c75f45ebdcb507d
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/commit/c85afb9d56a3ff1de5d54ac94c75f45ebdcb507d
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