[Blends-commit] [Git][blends-team/med][master] Update bio - added Suggests: r-bioc-structuralvariantannotation
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 829f21bf by Steffen Möller at 2021-03-03T18:21:50+00:00 Update bio - added Suggests: r-bioc-structuralvariantannotation Plus some more alphabetical order. - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -274,13 +274,6 @@ Recommends: gassst Recommends: hinge -Recommends: r-bioc-hilbertvis -Remark: It would be interesting to package HilbertVisGUI as well. - -Recommends: r-other-fastbaps - -Recommends: r-other-mott-happy.hbrem - Recommends: seq-gen Recommends: snp-sites @@ -1199,6 +1192,9 @@ Suggests: r-bioc-grohmm Suggests: r-bioc-gviz +Recommends: r-bioc-hilbertvis +Remark: It would be interesting to package HilbertVisGUI as well. + Recommends: r-bioc-htsfilter Recommends: r-bioc-impute @@ -1225,9 +1221,11 @@ Recommends: r-bioc-rtracklayer Suggests: r-bioc-savr +Recommends: r-bioc-scater + Suggests: r-bioc-singlecellexperiment -Recommends: r-bioc-scater +Suggests: r-bioc-structuralvariantannotation Suggests: r-bioc-tximport @@ -1315,6 +1313,10 @@ Recommends: r-cran-wgcna Recommends: r-other-ascat +Recommends: r-other-fastbaps + +Recommends: r-other-mott-happy.hbrem + Recommends: readucks Recommends: recan View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/829f21bfee57a3476b73f82002443a75edab4d31 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/829f21bfee57a3476b73f82002443a75edab4d31 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-bioc-structuralvariantannotation
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 07ab958b by Steffen Möller at 2021-03-03T18:22:56+00:00 Update bio-dev - added r-bioc-structuralvariantannotation - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -205,6 +205,7 @@ Suggests: r-bioc-affxparser, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, + r-bioc-structuralvariantannotation, r-bioc-titancna, r-bioc-tfbstools, r-bioc-tximport, View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/07ab958b808a449de3a93186646ebe44931d97c7 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/07ab958b808a449de3a93186646ebe44931d97c7 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added bioawk
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: d02aa293 by Steffen Möller at 2021-03-03T16:26:11+00:00 Update bio - added bioawk - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -423,6 +423,8 @@ Recommends: libvcflib-tools Recommends: bppsuite, bppphyview +Recommends: bioawk + Suggests: getdata X-Mark: Prospective packages are starting here View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d02aa2936db49a53a52891e84fe564209072eaef -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d02aa2936db49a53a52891e84fe564209072eaef You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added python3-bx
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9e40b532 by Steffen Möller at 2021-02-25T13:34:47+00:00 Update bio-dev - added python3-bx - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -619,6 +619,8 @@ Recommends: python3-torch Recommends: python3-anndata +Recommends: python3-bx + Suggests: libbbhash-dev Recommends: python3-cooler, python3-pairix View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9e40b5326745237e9fe6f89a18be378454f89532 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9e40b5326745237e9fe6f89a18be378454f89532 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-bioc-gseabase, r-bioc-gsva
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 89773eaf by Steffen Möller at 2021-02-18T21:34:15+00:00 Update bio-dev - added r-bioc-gseabase, r-bioc-gsva - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -176,6 +176,8 @@ Suggests: r-bioc-affxparser, r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, + r-bioc-gseabase, + r-bioc-gsva, r-bioc-gviz, r-bioc-hypergraph, r-bioc-impute, View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/89773eaf75183e58c6a09d08b5a9073bb0cfe72e -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/89773eaf75183e58c6a09d08b5a9073bb0cfe72e You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added r-bioc-{affxparser, oligo, oligoclasses, arrayexpress}
Steffen Möller pushed to branch master at Debian Blends Team / med
Commits:
c62a1cd6 by Steffen Möller at 2021-02-18T17:53:31+00:00
Added r-bioc-{affxparser,oligo,oligoclasses,arrayexpress}
- - - - -
1 changed file:
- tasks/bio-dev
Changes:
=
tasks/bio-dev
=
@@ -137,13 +137,15 @@ Suggests: qiime,
q2lint,
q2templates
-Suggests: r-bioc-affy,
+Suggests: r-bioc-affxparser,
+ r-bioc-affy,
r-bioc-affyio,
r-bioc-altcdfenvs,
r-bioc-annotate,
r-bioc-annotationdbi,
r-bioc-annotationhub,
r-bioc-aroma.light,
+ r-bioc-arrayexpress,
r-bioc-biocgenerics,
r-bioc-biocneighbors,
r-bioc-biomart,
@@ -185,6 +187,8 @@ Suggests: r-bioc-affy,
r-bioc-mofa,
r-bioc-multiassayexperiment,
r-bioc-nanostringqcpro,
+ r-bioc-oligo,
+ r-bioc-oligoclasses,
r-bioc-org.hs.eg.db,
r-bioc-pcamethods,
r-bioc-phyloseq,
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/c62a1cd604b65b06fdcb78cafc1db3af6e7a761b
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/c62a1cd604b65b06fdcb78cafc1db3af6e7a761b
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[Blends-commit] [Git][blends-team/med][master] Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 419f39f8 by Steffen Möller at 2021-01-26T12:51:35+00:00 Update bio-dev - corrected libdynamic-dev to libxxsds-dynamic-dev - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -631,6 +631,8 @@ Recommends: python3-peptidebuilder Recommends: libopenmm-dev, libmmblib-dev -Suggests: libconcurrentqueue-dev, libdynamic-dev, libatomicqueue-dev, libargs-dev +Suggests: libconcurrentqueue-dev, libxxsds-dynamic-dev, libatomicqueue-dev, libargs-dev Suggests: libsuma-dev + + View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/419f39f81ba73826c625e3c914ed591b892523d8 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/419f39f81ba73826c625e3c914ed591b892523d8 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added purecn, titancna
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 50bb286a by Steffen Möller at 2020-12-07T14:21:15+00:00 Update bio-dev - added purecn, titancna - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -189,6 +189,7 @@ Suggests: r-bioc-affy, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, + r-bioc-purecn, r-bioc-qusage, r-bioc-rbgl, r-bioc-rsamtools, @@ -198,6 +199,7 @@ Suggests: r-bioc-affy, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, + r-bioc-titancna, r-bioc-tfbstools, r-bioc-tximport, r-bioc-variantannotation, View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/50bb286a9487703d14843178da48e86ca8a79dd2 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/50bb286a9487703d14843178da48e86ca8a79dd2 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added all the qiime packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: e056dc1d by Steffen Möller at 2020-12-02T22:29:18+00:00 Update bio-dev - added all the qiime packages - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -24,6 +24,8 @@ Suggests: python3-biopython-sql, python-biopython-doc Suggests: python3-cogent3 +Suggests: python3-mcaller + Suggests: python3-joypy Suggests: python3-ncls @@ -101,6 +103,34 @@ Remark: Fork from jebl http://sourceforge.net/projects/jebl/ to develop a new API and class library. +Suggests: qiime, + q2-alignment, + q2-composition, + q2-cutadapt + q2-dada2, + q2-deblur, + q2-demux, + q2-diversity, + q2-emperor, + q2-feature-classifier, + q2-feature-table, + q2-fragment-insertion, + q2-gneiss, + q2-longitudinal, + q2-metadata, + q2-phylogeny, + q2-quality-control, + q2-quality-filter, + q2-sample-classifier, + q2-shogun, + q2-taxa, + q2-types, + q2-vsearch, + q2cli, + q2cwl, + q2lint, + q2templates + Suggests: r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, @@ -275,8 +305,6 @@ Suggests: r-cran-venndiagram Recommends: r-cran-webgestaltr - - Recommends: r-other-hms-dbmi-spp Recommends: r-other-apmswapp View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/e056dc1de9486da0086ae5f086950ed0e08cf777 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/e056dc1de9486da0086ae5f086950ed0e08cf777 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added mcaller
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 7662399f by Steffen Möller at 2020-12-02T22:56:26+00:00 Update bio - added mcaller - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -299,6 +299,8 @@ Recommends: gmap Recommends: igv +Recommends: r-other-rajewsky-dropbead + Recommends: picard-tools Recommends: acedb-other @@ -840,6 +842,8 @@ X-Importance: efficient Recommends: mauve-aligner +Suggests: mcaller + Recommends: mecat2 Recommends: medaka View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7662399f6daf6e3fe1079c89f7270ae6e457c254 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7662399f6daf6e3fe1079c89f7270ae6e457c254 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added seqcluster
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 98a7b84c by Steffen Möller at 2020-11-08T23:48:25+00:00 Update bio - added seqcluster - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1376,6 +1376,8 @@ Remark: Formerly part of Debian as biococoa.app but removed Recommends: seqwish +Suggests: seqcluster + Recommends: sga Recommends: shovill View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/98a7b84c797de4f6db21fe81b69083c57bfcb8bf -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/98a7b84c797de4f6db21fe81b69083c57bfcb8bf You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added suggesion for hts-nim-tools
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: a42fa4e1 by Steffen Möller at 2020-11-08T23:46:39+00:00 Update bio - added suggesion for hts-nim-tools - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -741,6 +741,8 @@ Remark: This older version of HMMER is used in some applications Recommends: htqc +Suggests: hts-nim-tools + Recommends: idba Recommends: idefix View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/a42fa4e19f0a457c02dedc4c96976f14d4527b86 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/a42fa4e19f0a457c02dedc4c96976f14d4527b86 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added nim-modules kexpr and lapper
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 80833de6 by Steffen Möller at 2020-11-08T23:44:43+00:00 Update bio-dev - added nim-modules kexpr and lapper - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -360,6 +360,8 @@ Recommends: librelion-dev Recommends: libdivsufsort-dev +Suggests: nim-kexpr, nim-lapper + Recommends: bioclipse Homepage: http://www.bioclipse.net/ License: Eclipse Public License (EPL) + exception View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/80833de6986338a4a3e2c9fbe9f1dab1ec82f203 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/80833de6986338a4a3e2c9fbe9f1dab1ec82f203 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-bioc-cager and dependency
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: d7d721ac by Steffen Möller at 2020-11-08T23:43:29+00:00 Update bio-dev - added r-bioc-cager and dependency - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -117,6 +117,7 @@ Suggests: r-bioc-affy, r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, + r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap, r-bioc-cummerbund, @@ -157,6 +158,7 @@ Suggests: r-bioc-affy, r-bioc-rsamtools, r-bioc-rentrez, r-bioc-rtracklayer, + r-bioc-s4vectors, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d7d721acdcee1eb268cdb501992f437d5d58ebf9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d7d721acdcee1eb268cdb501992f437d5d58ebf9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added BioConductor species gene database representations
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: e0525987 by Steffen Möller at 2020-09-20T01:20:05+00:00 Update bio - added BioConductor species gene database representations - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1197,6 +1197,8 @@ Recommends: r-bioc-multiassayexperiment Recommends: r-bioc-mutationalpatterns +Suggests: r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, r-bioc-org.rn.eg.db, r-bioc-org.ce.eg.db + Recommends: r-bioc-pcamethods Suggests: r-bioc-qusage View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/e05259875da404b719016c4fc7a39c94c3989fb7 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/e05259875da404b719016c4fc7a39c94c3989fb7 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added joypy, *hnsw*, biocneighbors
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: bc4f1e04 by Steffen Möller at 2020-09-06T16:37:37+00:00 Update bio-dev - added joypy, *hnsw*, biocneighbors - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -24,6 +24,8 @@ Suggests: python3-biopython-sql, python-biopython-doc Suggests: python3-cogent3 +Suggests: python3-joypy + Suggests: python3-ncls Suggests: python3-pycosat @@ -57,6 +59,8 @@ Suggests: libfreecontact-doc Recommends: libhdf5-dev +Suggets: libhnswlib-dev + Recommends: libgo-perl Recommends: libbio-graphics-perl, libbio-coordinate-perl @@ -105,6 +109,7 @@ Suggests: r-bioc-affy, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-biocgenerics, + r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, @@ -230,6 +235,8 @@ Recommends: r-cran-qqman Suggests: r-cran-rann +Suggests: r-cran-rcpphnsw + Recommends: r-cran-rentrez Suggests: r-cran-rsgcc View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/bc4f1e0468b318808b7c3c50e763584b909ff6de -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/bc4f1e0468b318808b7c3c50e763584b909ff6de You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added biocneighbors+rcpphnsw+hnswlib
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 3dc09fba by Steffen Möller at 2020-09-06T16:33:42+00:00 Update bio - added biocneighbors+rcpphnsw+hnswlib - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -788,6 +788,8 @@ Recommends: leaff Suggests: libhdf5-dev +Suggests: libhnswlib-dev + Recommends: ltrsift Recommends: lofreq @@ -1139,6 +1141,8 @@ Suggests: r-bioc-aroma.light Suggests: r-bioc-beachmat +Suggests: r-bioc-biocneighbors + Suggests: r-bioc-biocsingular Recommends: r-bioc-biostrings @@ -1261,6 +1265,8 @@ Recommends: r-cran-phytools Recommends: r-cran-pscbs +Suggests: r-cran-rcpphnsw + Suggests: r-cran-rsgcc Suggests: r-cran-sctransform View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/3dc09fba1faa8bdb717b17f228b7ddcf887fb231 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/3dc09fba1faa8bdb717b17f228b7ddcf887fb231 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added nanocomp, python3-nanoget - reordering
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 362a34fe by Steffen Möller at 2020-09-04T12:36:40+00:00 Update bio - added nanocomp, python3-nanoget - reordering - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -890,16 +890,22 @@ Recommends: mview Recommends: nanocall -Recommends: nanook +Suggests: nanocomp -Recommends: nanopolish +Recommends: nanofilt + +# Suggests: nanoget - see python3-nanoget Recommends: nanolyse -Recommends: nanofilt +# Suggests: nanomath - see python3-nanomath + +Recommends: nanook Recommends: nanoplot +Recommends: nanopolish + Recommends: nanostat Recommends: nanosv @@ -1077,6 +1083,8 @@ Suggests: python3-loompy Suggests: python3-nanomath +Suggests: python3-nanoget + Recommends: python3-pairtools Recommends: python3-pybedtools View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/362a34fec8922a63763b8dac5796833f93fa8f47 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/362a34fec8922a63763b8dac5796833f93fa8f47 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - series of build dependencies (header-only libraries)
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 5d24a569 by Steffen Möller at 2020-09-03T14:50:15+00:00 Update bio-dev - series of build dependencies (header-only libraries) - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -575,3 +575,5 @@ Suggests: python3-intake Recommends: python3-nanoget Recommends: libopenmm-dev, libmmblib-dev + +Suggests: libconcurrentqueue-dev, libdynamic-dev, libatomicqueue-dev, libargs-dev View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/5d24a569b75f7e51f2efd878373204691d9a522a -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/5d24a569b75f7e51f2efd878373204691d9a522a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - sorting, adding, typo, no demotions to suggests
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: d9c167d8 by Steffen Möller at 2020-08-26T21:24:15+00:00 Update bio - sorting, adding, typo, no demotions to suggests - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1127,7 +1127,9 @@ Suggests: r-bioc-annotationhub Suggests: r-bioc-aroma.light -Suggests: r-bioc-biosingular +Suggests: r-bioc-beachmat + +Suggests: r-bioc-biocsingular Recommends: r-bioc-biostrings @@ -1181,14 +1183,24 @@ Suggests: r-bioc-qusage Recommends: r-bioc-rtracklayer -Recommends: r-cran-samr +Suggests: r-bioc-savr + +Suggests: r-bioc-singlecellexperiment + +Recommends: r-bioc-scater Suggests: r-bioc-tximport +Recommends: r-cran-adegenet, r-cran-adephylo + Suggests: r-cran-amap +Recommends: r-cran-ape + Suggests: r-cran-biwt +Suggests: r-cran-boolnet + Suggests: r-cran-corrplot Suggests: r-cran-dynamictreecut @@ -1197,23 +1209,19 @@ Recommends: r-bioc-ebseq Suggests: r-cran-epir +Suggests: r-cran-fitdistrplus + Suggests: r-cran-forecast Suggests: r-cran-gprofiler -Suggests: r-cran-fitdistrplus - Suggests: r-cran-qqman Recommends: r-cran-rotl Suggests: r-cran-rentrez -Recommends: r-cran-adegenet, r-cran-adephylo - -Recommends: r-cran-ape - -Suggests: r-cran-boolnet +Recommends: r-cran-samr Recommends: r-cran-distory @@ -1239,8 +1247,6 @@ Recommends: r-cran-pscbs Suggests: r-cran-rsgcc -Suggests: r-bioc-savr - Suggests: r-cran-sctransform Recommends: r-cran-seurat View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d9c167d82147af07913554e956bfcaa1bb3c60d6 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d9c167d82147af07913554e956bfcaa1bb3c60d6 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added python3-networkx, a common dependency
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 1aaa67c5 by Steffen Möller at 2020-08-12T12:42:50+00:00 Update bio-dev - added python3-networkx, a common dependency - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -382,6 +382,8 @@ Recommends: python3-cobra Recommends: libtabixpp-dev +Suggests: python3-networkx + Recommends: python3-ruffus Recommends: python3-hyphy View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1aaa67c54d1809832d80fadcb85de272694ca980 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1aaa67c54d1809832d80fadcb85de272694ca980 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added r-bioc-biosingular, -experimenthub
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 1a49e4c6 by Steffen Möller at 2020-08-06T10:23:29+00:00 Update bio - added r-bioc-biosingular, -experimenthub Alphabetical sorting, no demotions (although tempting) - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1119,40 +1119,50 @@ Recommends: rambo-k Recommends: rapmap -Suggests: r-bioc-ctc +Recommends: r-bioc-annotate -Recommends: r-bioc-cummerbund +Suggests: r-bioc-annotationhub -Recommends: r-bioc-rtracklayer, r-bioc-gviz, r-bioc-biostrings, r-bioc-annotate, r-bioc-genefilter +Suggests: r-bioc-aroma.light -Recommends: r-bioc-deseq2, r-bioc-dnacopy, r-bioc-geneplotter +Suggests: r-bioc-biosingular -Recommends: r-bioc-geoquery +Recommends: r-bioc-biostrings -Suggests: r-bioc-grohmm +Recommends: r-bioc-bitseq -Suggests: r-bioc-tximport +Suggests: r-bioc-ctc -Suggests: r-cran-amap +Recommends: r-bioc-cummerbund -Suggests: r-cran-biwt +Suggests: r-bioc-dnacopy -Suggests: r-cran-corrplot +Recommends: r-bioc-deseq2 -Suggests: r-cran-dynamictreecut +Recommends: r-bioc-edger -Recommends: r-bioc-ebseq +Suggests: r-bioc-ensembldb, -Suggests: r-cran-epir +Suggests: r-bioc-experimenthub -Suggests: r-cran-forecast +Recommends: r-bioc-genefilter -Suggests: r-cran-gprofiler +Suggests: r-bioc-geneplotter -Suggests: r-cran-fitdistrplus +Recommends: r-bioc-geoquery + +Suggests: r-bioc-go.db + +Suggests: r-bioc-grohmm + +Suggests: r-bioc-gviz + +Recommends: r-bioc-htsfilter Recommends: r-bioc-impute +Recommends: r-bioc-limma + Recommends: r-bioc-mergeomics Recommends: r-bioc-metagenomeseq, r-bioc-phyloseq @@ -1163,17 +1173,33 @@ Recommends: r-bioc-multiassayexperiment Recommends: r-bioc-mutationalpatterns -Recommends: r-bioc-limma, r-bioc-edger +Recommends: r-bioc-pcamethods -Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr +Suggests: r-bioc-qusage -Recommends: r-bioc-htsfilter +Recommends: r-bioc-rtracklayer -Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, +Recommends: r-cran-samr -Suggests: r-bioc-go.db +Suggests: r-bioc-tximport -Suggests: r-bioc-qusage +Suggests: r-cran-amap + +Suggests: r-cran-biwt + +Suggests: r-cran-corrplot + +Suggests: r-cran-dynamictreecut + +Recommends: r-bioc-ebseq + +Suggests: r-cran-epir + +Suggests: r-cran-forecast + +Suggests: r-cran-gprofiler + +Suggests: r-cran-fitdistrplus Suggests: r-cran-qqman View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1a49e4c60fd3148cd0bf9076395ca51ff2af50e1 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1a49e4c60fd3148cd0bf9076395ca51ff2af50e1 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added libhdf5-dev
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: c5aa72d9 by Steffen Möller at 2020-07-27T10:43:11+00:00 Update bio - added libhdf5-dev - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -784,6 +784,8 @@ Recommends: lastz Recommends: leaff +Suggests: libhdf5-dev + Recommends: ltrsift Recommends: lofreq View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c5aa72d94bef5e5391f1ae00ffc8e2c14441a59d -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c5aa72d94bef5e5391f1ae00ffc8e2c14441a59d You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added libhdf5-dev
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 55030a60 by Steffen Möller at 2020-07-27T10:42:10+00:00 Update bio-dev - added libhdf5-dev - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -55,6 +55,8 @@ Suggests: libfreecontact-dev, libfreecontact-perl Suggests: libfreecontact-doc +Recommends: libhdf5-dev + Recommends: libgo-perl Recommends: libbio-graphics-perl, libbio-coordinate-perl View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/55030a60dac880b4297b7c91b6d4673bc71c87fb -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/55030a60dac880b4297b7c91b6d4673bc71c87fb You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - some merging with the covid-19 task list
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 26035fed by Steffen Möller at 2020-07-07T15:04:20+00:00 Update bio - some merging with the covid-19 task list - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -449,6 +449,10 @@ Suggests: baitfisher Suggests: bandage +Suggests: bbmap + +Suggests: bcalm + Suggests: beagle Suggests: bedops @@ -625,6 +629,8 @@ Suggests: emmax Suggests: ensembl-vep +Suggests: epigrass + Suggests: examl, raxml-ng Suggests: exabayes @@ -914,8 +920,6 @@ Recommends: optitype Recommends: paipline -Recommends: python3-pairtools - Recommends: pal2nal Recommends: paleomix @@ -1031,29 +1035,45 @@ Recommends: pssh2 Recommends: pufferfish +Recommends: pycorrfit + +Recommends: pyscanfcs + Suggests: python3-alignlib Recommends: python3-cogent -Recommends: pycorrfit +Suggests: python3-cgecore -Recommends: pyscanfcs +Suggests: python3-cyvcf2 -Recommends: python3-deeptools, python3-deeptoolsintervals +Suggests: python3-deeptools, python3-deeptoolsintervals Recommends: python3-geneimpacts Recommends: python3-gffutils +Suggests: Python3-htseq + Suggests: python3-loompy -Recommends: python3-pybel +Suggests: python3-nanomath + +Recommends: python3-pairtools + +Recommends: python3-pybedtools + +Suggests: python3-pybel Suggests: python3-pychopper +Suggests: python3-pyfaidx + +Suggests: python3-pyflow + Suggests: python3-py2bit -Recommends: python3-pybedtools +Suggests: python3-pysam Recommends: python3-sqt @@ -,6 +1131,8 @@ Suggests: r-cran-dynamictreecut Recommends: r-bioc-ebseq +Suggests: r-cran-epir + Suggests: r-cran-forecast Suggests: r-cran-gprofiler @@ -1466,8 +1488,6 @@ Recommends: r-cran-tcr, r-cran-tigger, r-cran-alakazam, r-cran-shazam, igor, r-c Recommends: ncbi-igblast -Suggests: python3-pyflow - Recommends: pigx-rnaseq, pigx-scrnaseq X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/26035fed5503e0529a0db0f406801059ee11b5f9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/26035fed5503e0529a0db0f406801059ee11b5f9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added conda-package-handling
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 15699646 by Steffen Möller at 2020-06-23T16:43:27+00:00 Update bio-dev - added conda-package-handling - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -4,6 +4,8 @@ Description: Debian Med packages for development of bioinformatics applications This metapackage will install Debian packages which might be helpful for development of applications for biological research. +Suggests: conda-package-handling + Recommends: bioperl, bioperl-run, libncbi6-dev Recommends: mcl View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/15699646484a1558a9abcfc69ca4b15295a4f2ce -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/15699646484a1558a9abcfc69ca4b15295a4f2ce You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added conda-package-handling
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 8ce3 by Steffen Möller at 2020-06-23T16:42:51+00:00 Update bio - added conda-package-handling - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -45,6 +45,8 @@ Remark: Dead upstream The homepage of this project vanished as well as the Download area. An old unmaintained version remained at code.google.com. Please drop the maintainer a note if you have any news of this project. + +Suggests: conda-package-handling Suggests: boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/8ce3f22c38f3073aa817e4acc4fe28e98563 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/8ce3f22c38f3073aa817e4acc4fe28e98563 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added entries from new queue
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: ae4c7d37 by Steffen Möller at 2020-06-21T16:43:10+00:00 Update bio - added entries from new queue - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -163,6 +163,16 @@ Suggests: tophat, Suggests: umap +Suggests: python3-intake + +Suggests: python3-ncls + +Suggests: python3-pychopper + +Suggests: python3-pyrle + +Suggests: python3-pyranges + X-End-Category: high-throughput sequencing X-Begin-Category: Analysis of RNA sequences. @@ -173,10 +183,6 @@ Suggests: rnahybrid Suggests: python3-anndata -Suggests: python3-ncls - -X-Category: Target duplex prediction - X-End-Category: Analysis of RNA sequences. X-Begin-Category: Molecular modelling and molecular dynamics View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/ae4c7d375f349d6b8b1dd7568014d6d86f602bb4 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/ae4c7d375f349d6b8b1dd7568014d6d86f602bb4 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added ncls
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9be13a52 by Steffen Möller at 2020-06-13T16:15:05+00:00 Update bio - added ncls - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -173,6 +173,8 @@ Recommends: rnahybrid Suggests: python3-anndata +Suggests: python3-ncls + X-Category: Target duplex prediction X-End-Category: Analysis of RNA sequences. View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9be13a52c3f7293d52e264e49c38ed2d6b1b9f64 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9be13a52c3f7293d52e264e49c38ed2d6b1b9f64 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added TODO mmtf python package
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9c4ebd18 by Steffen Möller at 2020-06-12T19:03:36+00:00 Update covid-19 - added TODO mmtf python package - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -245,6 +245,11 @@ Recommends: pybedtools-bin Recommends: pyomo +Recommends: python3-biopython + +Suggests: python3-mmtf +Remark: https://github.com/rcsb/mmtf-python + Recommends: python3-vcf Recommends: r-bioc-rsamtools View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9c4ebd18a54a95875a50dffce8bcfafe9a4bf6be -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9c4ebd18a54a95875a50dffce8bcfafe9a4bf6be You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - added ref to Rsubread (BioConductor)
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 14546540 by Steffen Möller at 2020-06-11T12:05:27+00:00 Update bio-ngs - added ref to Rsubread (BioConductor) - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -17,6 +17,7 @@ Recommends: picard-tools, r-bioc-edger, r-bioc-hilbertvis, + r-bioc-rsubread, rna-star, samtools, sra-toolkit, View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/14546540cc0aa166c1062338a369af88a1344515 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/14546540cc0aa166c1062338a369af88a1344515 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added ref to Rsubread (BioConductor)
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: f5810bf2 by Steffen Möller at 2020-06-11T12:04:29+00:00 Update covid-19 - added ref to Rsubread (BioConductor) - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -45,6 +45,8 @@ Recommends: r-bioc-rgsepd Recommends: r-bioc-pwmenrich +Suggests: r-bioc-rsubread + Recommends: r-bioc-tcgabiolinks Recommends: r-cran-mediana View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f5810bf20cb9867b90e2bb0550381debac0dbcd2 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f5810bf20cb9867b90e2bb0550381debac0dbcd2 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added tophat and tophat-recondition
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9f36fb44 by Steffen Möller at 2020-06-08T22:23:36+00:00 Update bio - added tophat and tophat-recondition - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -158,6 +158,9 @@ Suggets: q2-taxa, Recommends: scoary +Recommends: tophat, +tophat-recondition + Recommends: umap X-End-Category: high-throughput sequencing View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9f36fb4458762e3b4bfff2696c039eb06dc9afe0 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9f36fb4458762e3b4bfff2696c039eb06dc9afe0 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added qiime2 modules not yet in distribution
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 373814bb by Steffen Möller at 2020-06-08T15:25:00+00:00 Update bio - added qiime2 modules not yet in distribution - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -141,6 +141,20 @@ Suggests: q2-cutadapt, q2cli, q2templates +Suggets: q2-taxa, + q2-alignment, + q2-emperor, + q2-composition, + q2-sample-classifier, + q2-vsearch, + q2-dada2. + q2-deblur, + q2-diversity, + q2-gneiss, + q2-longitudinal, + q2-phylogeny, + q2-quality-control, + q2-fragment-insertion Recommends: scoary View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/373814bb72b8bc9e6c8f9770073f7fee672830a0 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/373814bb72b8bc9e6c8f9770073f7fee672830a0 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added qiime modules
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: afb80161 by Steffen Möller at 2020-06-08T14:58:57+00:00 Update bio - added qiime modules - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -131,6 +131,17 @@ Recommends: last-align, maq, ssake, velvet | velvet-long Recommends: qiime +Suggests: q2-cutadapt, + q2-demux, + q2-feature-classifier, + q2-feature-table, + q2-metadata, + q2-quality-filter, + q2-types, + q2cli, + q2templates + + Recommends: scoary Recommends: umap View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/afb80161d9ef2083d26658f875eacd40be6beb99 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/afb80161d9ef2083d26658f875eacd40be6beb99 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added nanosv
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: f3dca1ab by Steffen Möller at 2020-06-07T14:26:10+00:00 Update bio - added nanosv - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -828,6 +828,8 @@ Suggests: nanolyse Suggests: nanoplot +Suggests: nanosv + Recommends: ncbi-entrez-direct Recommends: ncbi-seg View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f3dca1abdd2f7613bf523a0dea9640c6ec2d0698 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f3dca1abdd2f7613bf523a0dea9640c6ec2d0698 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added flappie
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 0dd4c2c6 by Steffen Möller at 2020-06-07T14:21:07+00:00 Update bio - added flappie - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -607,6 +607,8 @@ Recommends: fastqc Recommends: fastqtl +Suggests: flappie + Recommends: flash Recommends: flye View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/0dd4c2c6aa40f7639c320edd72ee17a1bfa40bb8 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/0dd4c2c6aa40f7639c320edd72ee17a1bfa40bb8 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added picopore
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 47bbec80 by Steffen Möller at 2020-06-07T01:39:54+00:00 Update bio - added picopore - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -911,6 +911,8 @@ Recommends: phyx Recommends: physamp +Suggests: picopore + Recommends: piler Recommends: pilercr View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/47bbec8032396ba8cec1a321bfa09de0c61b980a -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/47bbec8032396ba8cec1a321bfa09de0c61b980a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added graphmap2
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: db68db33 by Steffen Möller at 2020-06-03T14:14:34+00:00 Update bio - added graphmap2 - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -661,6 +661,8 @@ Recommends: grabix Recommends: graphlan +Suggests: graphmap2 + Recommends: gwama Recommends: gubbins View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/db68db33a8b349972af5903290a76c47a1b246d9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/db68db33a8b349972af5903290a76c47a1b246d9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - added graphmap2
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 2a7d1d7a by Steffen Möller at 2020-06-03T14:13:47+00:00 Update bio-ngs - added graphmap2 - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -113,6 +113,8 @@ Recommends: fml-asm Recommends: fsm-lite +Suggests: graphmap2 + Recommends: grinder Recommends: giira View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/2a7d1d7ab7f8782d4ec1ec4314446b73bcb8bf63 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/2a7d1d7ab7f8782d4ec1ec4314446b73bcb8bf63 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - added nanolyse, nanoplot
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: dd7c9d6f by Steffen Möller at 2020-06-03T14:08:41+00:00 Update bio-ngs - added nanolyse, nanoplot - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -147,6 +147,10 @@ Recommends: mira-assembler Recommends: mapsembler2 +Suggests: nanolyse + +Suggests: nanoplot + Recommends: nanopolish Recommends: paleomix View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dd7c9d6fdf6999c7cc48055b5142ded797b0e334 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dd7c9d6fdf6999c7cc48055b5142ded797b0e334 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added nanolyse, nanoplot
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 4b1327b9 by Steffen Möller at 2020-06-03T14:07:49+00:00 Update bio - added nanolyse, nanoplot - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -818,6 +818,10 @@ Recommends: nanook Recommends: nanopolish +Suggests: nanolyse + +Suggests: nanoplot + Recommends: ncbi-entrez-direct Recommends: ncbi-seg View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/4b1327b9d0c99522bbf7f34bff48323cac4ffd27 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/4b1327b9d0c99522bbf7f34bff48323cac4ffd27 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added anndata, quicktree
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 86b6dc6e by Steffen Möller at 2020-05-24T21:26:24+00:00 Update covid-19 - added anndata,quicktree - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -9,6 +9,10 @@ X-Mark: Recommends: cwltool, snakemake +Suggests: python3-anndata + +Suggests: quicktree + Recommends: arvados Recommends: augur View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/86b6dc6e7d1249555a7c4d535bd0dce7ac7e4edc -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/86b6dc6e7d1249555a7c4d535bd0dce7ac7e4edc You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - added ref to anndata
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: a7dc85fc by Steffen Möller at 2020-05-24T21:14:54+00:00 Update bio-ngs - added ref to anndata - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -28,6 +28,7 @@ Recommends: Recommends: libvcflib-tools +Suggests: python3-anndata X-Begin -Category: metagenomics View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/a7dc85fc8150f84c304c09f9329862288989ca1f -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/a7dc85fc8150f84c304c09f9329862288989ca1f You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added ref to anndata
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 1f665a2a by Steffen Möller at 2020-05-24T21:14:15+00:00 Update bio-dev - added ref to anndata - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -10,6 +10,8 @@ Recommends: mcl X-Category: Analysis of network structure X-Importance: Clustering of graphs +Suggests: python3-anndata + Recommends: biosquid Recommends: cwltool, snakemake View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1f665a2a1c6c874f09f970260eef2b4ae199116c -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/1f665a2a1c6c874f09f970260eef2b4ae199116c You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added ref to anndata
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 5d1f4529 by Steffen Möller at 2020-05-24T21:13:11+00:00 Update bio - added ref to anndata - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -140,6 +140,9 @@ X-Begin-Category: Analysis of RNA sequences. Recommends: infernal Recommends: rnahybrid + +Suggests: python3-anndata + X-Category: Target duplex prediction X-End-Category: Analysis of RNA sequences. View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/5d1f4529780e0d7a0edd19aa1764cc8d4a8327fa -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/5d1f4529780e0d7a0edd19aa1764cc8d4a8327fa You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added megahit
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 7e7e3834 by Steffen Möller at 2020-05-24T14:34:57+00:00 Update covid-19 - added megahit - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -24,6 +24,8 @@ Recommends: chip-seq Recommends: fieldbioinformatics +Recommends: megahit + Recommends: idseq-dag Recommends: nextstrain-ncov View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7e7e3834768efd7b021a888f3418d1fcd3f45c0e -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7e7e3834768efd7b021a888f3418d1fcd3f45c0e You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added megahit
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9de74567 by Steffen Möller at 2020-05-24T14:26:10+00:00 Update bio - added megahit - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -60,6 +60,8 @@ Recommends: mhap Recommends: bwa +Recommends: megahit + Recommends: mummer, e-mem Recommends: ncbi-blast+-legacy, plast View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9de74567d789c0acf95905c601ba66cad32055d4 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9de74567d789c0acf95905c601ba66cad32055d4 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - added pizzly
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 30b4953a by Steffen Möller at 2020-05-09T19:36:57+00:00 Update bio-ngs - added pizzly - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -156,6 +156,8 @@ Recommends: pbjelly, pbhoney Recommends: pirs +Recommends: pizzly + Recommends: placnet Recommends: poretools View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/30b4953a602b418123a979a8429679b57ee63526 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/30b4953a602b418123a979a8429679b57ee63526 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added ref to python3-bel-resources
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 833b63f8 by Steffen Möller at 2020-05-09T15:25:02+00:00 Update bio-dev - added ref to python3-bel-resources - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -521,7 +521,7 @@ Recommends: python3-treetime Recommends: libbio-tools-run-alignment-tcoffee-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl -Recommends: python3-pybel +Recommends: python3-pybel python3-bel-resources Recommends: python3-mirtop View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/833b63f848cea9cde6cc1188c534a9bf03559518 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/833b63f848cea9cde6cc1188c534a9bf03559518 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added pytorch
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 4dcbc92e by Steffen Möller at 2020-04-27T01:23:53+00:00 Update covid-19 - added pytorch - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -398,3 +398,5 @@ Recommends: umis Recommends: workrave X-Mark: https://lists.debian.org/debian-med/2020/03/msg00142.html + +pytorch \ No newline at end of file View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/4dcbc92ea561a15ddcc0b77d7d65f0aa781598a7 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/4dcbc92ea561a15ddcc0b77d7d65f0aa781598a7 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update covid-19 - added pigx-rnaseq
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: bdbb7808 by Steffen Möller at 2020-04-24T14:35:40+00:00 Update covid-19 - added pigx-rnaseq - - - - - 1 changed file: - tasks/covid-19 Changes: = tasks/covid-19 = @@ -55,6 +55,8 @@ Recommends: vadr Recommends: wtdbg2 +Recommends: pigx-rnaseq + X-Comment: X-Comment: https://lists.debian.org/debian-med/2020/04/msg00235.html View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/bdbb7808dc9a0f41f54f4b410a5487d793fae8ea -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/bdbb7808dc9a0f41f54f4b410a5487d793fae8ea You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added r-cran-optimalcutpoints
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 28014bab by Steffen Möller at 2020-04-23T19:06:30+00:00 Update bio - added r-cran-optimalcutpoints - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1052,6 +1052,8 @@ Suggests: r-cran-minerva Recommends: r-cran-metamix +Suggests: r-cran-optimalcutpoints + Suggests: r-cran-parmigene Recommends: r-cran-phangorn View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/28014babbfa74b11ecaeba6d187a6419db89b8bf -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/28014babbfa74b11ecaeba6d187a6419db89b8bf You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-cran-optimalcutpoints
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 6fde8688 by Steffen Möller at 2020-04-23T19:04:05+00:00 Update bio-dev - added r-cran-optimalcutpoints - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -204,6 +204,8 @@ Suggests: r-cran-natserv Suggests: r-cran-nmf +Suggests: r-cran-optimalcutpoints + Suggests: r-cran-parmigene Suggests: r-cran-pcapp View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/6fde868818095b8e13b77c324a00d7cebca9178c -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/6fde868818095b8e13b77c324a00d7cebca9178c You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added a few packages I found locally
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 7d278383 by Steffen Möller at 2020-03-30T16:19:18+00:00 Update bio-dev - added a few packages I found locally r-cran-shazam, r-cran-sitmo, r-cran-deseq,r-bioc-enrichedheatmap, r-cran-fastcluster, - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -106,14 +106,18 @@ Suggests: r-bioc-affy, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bitseq, + r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cner, + r-bioc-complexheatmap, r-bioc-cummerbund, r-bioc-ctc, r-bioc-dada2, + r-bioc-deseq, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, + r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter, @@ -156,7 +160,7 @@ Suggests: r-bioc-affy, r-bioc-variantannotation, r-bioc-xvector -Recommends: r-cran-adegenet, r-cran-adephylo +Suggests: r-cran-adegenet, r-cran-adephylo Suggest: r-cran-amap @@ -174,6 +178,8 @@ Suggests: r-cran-dt Suggests: r-cran-dynamictreecut +Suggests: r-cran-fastcluster, + Recommends: r-cran-forecast Recommends: r-cran-fitdistrplus @@ -190,6 +196,8 @@ Recommends: r-cran-haplo.stats Suggests: r-cran-ica +Suggests: r-cran-itertools + Suggests: r-cran-kaos Recommends: r-cran-metamix @@ -208,6 +216,8 @@ Suggests: r-cran-pcapp Recommends: r-cran-phangorn +Recommends: r-cran-pheatmap + Recommends: r-cran-phylobase Suggests: r-cran-proc @@ -239,16 +249,22 @@ Recommends: r-cran-samr Recommends: r-cran-sctransform Recommends: r-cran-seurat - +https://salsa.debian.org/blends-team/med/-/graphs/master Recommends: r-cran-seqinr +Suggests: r-cran-shazam + +Suggests: r-cran-sitmo + Recommends: r-cran-tsne Recommends: r-cran-vegan +Suggests: r-cran-venndiagram + Recommends: r-cran-webgestaltr -Recommends: r-cran-pheatmap + Recommends: r-other-hms-dbmi-spp View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7d278383db3f7ba9c5e15108e068ab71a2884db2 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7d278383db3f7ba9c5e15108e068ab71a2884db2 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/science][master] Update mathematics-dev: added python-numpy-groupies
Steffen Möller pushed to branch master at Debian Blends Team / science Commits: 27d5aadb by Steffen Möller at 2020-03-29T12:39:53+00:00 Update mathematics-dev: added python-numpy-groupies - - - - - 1 changed file: - tasks/mathematics-dev Changes: = tasks/mathematics-dev = @@ -221,6 +221,8 @@ Recommends: libfeel++-dev Recommends: python3-pynfft +Suggests: python-numpy-groupies + Recommends: libug-dev Recommends: libplb-dev View it on GitLab: https://salsa.debian.org/blends-team/science/-/commit/27d5aadba70b11714902bbc5df7b20aa23f6faa0 -- View it on GitLab: https://salsa.debian.org/blends-team/science/-/commit/27d5aadba70b11714902bbc5df7b20aa23f6faa0 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added dnapi
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: c3764038 by Steffen Möller at 2020-03-26T02:05:40+00:00 Update bio - added dnapi - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -119,6 +119,10 @@ X-End-Category: Sequence alignments and related programs. X-Begin-Category: high-throughput sequencing +Recommends: bustools + +Suggests: dnapi + Recommends: last-align, maq, ssake, velvet | velvet-long Recommends: qiime @@ -127,8 +131,6 @@ Recommends: scoary Recommends: umap -Recommends: bustools - X-End-Category: high-throughput sequencing X-Begin-Category: Analysis of RNA sequences. View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c3764038d88a6206ded38603bc0c68a153c8cb15 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c3764038d88a6206ded38603bc0c68a153c8cb15 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] bio-dev - minimap 1.x is deprecated, added 2.x
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 8e947380 by Steffen Möller at 2020-03-17T12:10:45+00:00 bio-dev - minimap 1.x is deprecated, added 2.x - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -401,7 +401,9 @@ Recommends: libpbseq-dev, libpbdata-dev, libpbihdf-dev, libblasr-dev Suggests: libpbcopper-dev -Recommends: libminimap-dev +Suggests: libminimap-dev + +Recommends: libminimap2-dev Recommends: libncl-dev View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/8e94738094f2e0e49cbd03d337f3b1ebe92c7b11 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/8e94738094f2e0e49cbd03d337f3b1ebe92c7b11 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added tinyalign
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 0a81d22b by Steffen Möller at 2020-02-26T14:04:36+00:00 Update bio - added tinyalign - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -948,6 +948,8 @@ Recommends: python3-sqt Recommends: python3-reaper +Suggests: python3-tinyalign + Recommends: python3-treetime Recommends: purple View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/0a81d22b36e2b8c00c34d3c49430e703ddb5e78a -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/0a81d22b36e2b8c00c34d3c49430e703ddb5e78a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added bustools
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 29c4566a by Steffen Möller at 2020-02-25T16:51:48+00:00 Update bio - added bustools - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -127,6 +127,8 @@ Recommends: scoary Recommends: umap +Recommends: bustools + X-End-Category: high-throughput sequencing X-Begin-Category: Analysis of RNA sequences. View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/29c4566a4fcb3bfee6a80be1c903f76b1ed9427b -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/29c4566a4fcb3bfee6a80be1c903f76b1ed9427b You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added r-cran-amap r-bioc-ctc r-cran-parmigene r-cran-rsgcc
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: bd36efe7 by Steffen Möller at 2020-01-21T01:13:00+00:00 Update bio - added r-cran-amap r-bioc-ctc r-cran-parmigene r-cran-rsgcc - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -643,7 +643,7 @@ Recommends: gwama Recommends: gubbins -Recommends: haploview +Recommends: haploview-cran-amap Recommends: harvest-tools @@ -969,6 +969,8 @@ Recommends: rambo-k Recommends: rapmap +Suggests: r-bioc-ctc + Recommends: r-bioc-cummerbund Recommends: r-bioc-rtracklayer, r-bioc-gviz, r-bioc-biostrings, r-bioc-annotate, r-bioc-genefilter @@ -979,6 +981,8 @@ Recommends: r-bioc-geoquery Suggests: r-bioc-tximport +Suggests: r-cran-amap + Suggests: r-cran-biwt Suggests: r-cran-corrplot @@ -1033,6 +1037,8 @@ Suggests: r-cran-minerva Recommends: r-cran-metamix +Suggests: r-cran-parmigene + Recommends: r-cran-phangorn Suggests: r-cran-pheatmap @@ -1041,6 +1047,8 @@ Recommends: r-cran-phytools Recommends: r-cran-pscbs +Suggests: r-cran-rsgcc + Suggests: r-bioc-savr Suggests: r-cran-sctransform View it on GitLab: https://salsa.debian.org/blends-team/med/commit/bd36efe79151fd1ecea10507ae5a8a50efdd9057 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/bd36efe79151fd1ecea10507ae5a8a50efdd9057 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-cran-amap r-bioc-ctc r-cran-parmigene r-cran-rsgcc
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: f52132aa by Steffen Möller at 2020-01-21T01:14:59+00:00 Update bio-dev - added r-cran-amap r-bioc-ctc r-cran-parmigene r-cran-rsgcc - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -107,6 +107,7 @@ Suggests: r-bioc-affy, r-bioc-bsgenome, r-bioc-cner, r-bioc-cummerbund, + r-bioc-ctc, r-bioc-dada2, r-bioc-deseq2, r-bioc-dnacopy, @@ -150,6 +151,8 @@ Suggests: r-bioc-affy, Recommends: r-cran-adegenet, r-cran-adephylo +Suggest: r-cran-amap + Suggests: r-cran-biwt Recommends: r-cran-boolnet @@ -192,6 +195,8 @@ Suggests: r-cran-natserv Suggests: r-cran-nmf +Suggests: r-cran-parmigene + Suggests: r-cran-pcapp Recommends: r-cran-phangorn @@ -208,6 +213,8 @@ Suggests: r-cran-rann Recommends: r-cran-rentrez +Suggests: r-cran-rsgcc + Recommends: r-cran-rncl, r-cran-rnexml Suggests: r-cran-robustrankaggreg View it on GitLab: https://salsa.debian.org/blends-team/med/commit/f52132aaeab4a749ea3aca071d57cc096cba9b75 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/f52132aaeab4a749ea3aca071d57cc096cba9b75 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev with biwt and minerva CRAN packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: cf5e6e2f by Steffen Möller at 2020-01-20T18:26:23+00:00 Update bio-dev with biwt and minerva CRAN packages - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -150,6 +150,8 @@ Suggests: r-bioc-affy, Recommends: r-cran-adegenet, r-cran-adephylo +Suggests: r-cran-biwt + Recommends: r-cran-boolnet Recommends: r-cran-corrplot @@ -184,6 +186,8 @@ Recommends: r-cran-metamix Suggests: r-cran-metap +Suggests: r-cran-minerva + Suggests: r-cran-natserv Suggests: r-cran-nmf View it on GitLab: https://salsa.debian.org/blends-team/med/commit/cf5e6e2fc1ba82f905ed8c0867f2d61fb704c84f -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/cf5e6e2fc1ba82f905ed8c0867f2d61fb704c84f You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added biwt and minerva CRAN packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 4d61c76b by Steffen Möller at 2020-01-20T18:25:10+00:00 Update bio - added biwt and minerva CRAN packages - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -979,6 +979,8 @@ Recommends: r-bioc-geoquery Suggests: r-bioc-tximport +Suggests: r-cran-biwt + Suggests: r-cran-corrplot Suggests: r-cran-dynamictreecut @@ -1027,6 +1029,8 @@ Recommends: r-cran-drinsight Recommends: r-cran-kaos +Suggests: r-cran-minerva + Recommends: r-cran-metamix Recommends: r-cran-phangorn View it on GitLab: https://salsa.debian.org/blends-team/med/commit/4d61c76b9d11ba342cec955e85cf25c4b73381a7 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/4d61c76b9d11ba342cec955e85cf25c4b73381a7 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev added r-bioc-nanostringqcpro
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 2d03e389 by Steffen Möller at 2020-01-14T12:46:18+00:00 Update bio-dev added r-bioc-nanostringqcpro - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -131,6 +131,7 @@ Suggests: r-bioc-affy, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, + r-bioc-nanostringqcpro, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, View it on GitLab: https://salsa.debian.org/blends-team/med/commit/2d03e389914e006905ea5d299309bad8167159a6 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/2d03e389914e006905ea5d299309bad8167159a6 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-cran-nmf
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 2b708bed by Steffen Möller at 2020-01-14T12:40:37+00:00 Update bio-dev - added r-cran-nmf - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -185,6 +185,8 @@ Suggests: r-cran-metap Suggests: r-cran-natserv +Suggests: r-cran-nmf + Suggests: r-cran-pcapp Recommends: r-cran-phangorn View it on GitLab: https://salsa.debian.org/blends-team/med/commit/2b708bed45e07efa388f6f5cf4fb2631b1791b24 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/2b708bed45e07efa388f6f5cf4fb2631b1791b24 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added r-cran-robustrankaggreg
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 966d792b by Steffen Möller at 2020-01-14T10:10:37+00:00 Update bio-dev - added r-cran-robustrankaggreg - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -203,6 +203,8 @@ Recommends: r-cran-rentrez Recommends: r-cran-rncl, r-cran-rnexml +Suggests: r-cran-robustrankaggreg + Suggests: r-cran-rocr Suggets: r-cran-rook View it on GitLab: https://salsa.debian.org/blends-team/med/commit/966d792ba6ff0546fd67c68891d4461cb9e9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/966d792ba6ff0546fd67c68891d4461cb9e9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - sorting, added r-cran-dt
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: d1750a99 by Steffen Möller at 2019-11-11T09:37:49Z Update bio-dev - sorting, added r-cran-dt - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -148,12 +148,14 @@ Recommends: r-cran-boolnet Recommends: r-cran-corrplot -Recommends: r-cran-dynamictreecut - Recommends: r-cran-distory Recommends: r-cran-drinsight +Suggests: r-cran-dt + +Suggests: r-cran-dynamictreecut + Recommends: r-cran-forecast Recommends: r-cran-fitdistrplus View it on GitLab: https://salsa.debian.org/blends-team/med/commit/d1750a996c8a750528bbee16d0cf46d5ababaa51 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/d1750a996c8a750528bbee16d0cf46d5ababaa51 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added a few recent accepts from CRAN+BioC
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 68a8c2ff by Steffen Möller at 2019-11-10T10:39:45Z Update bio-dev - added a few recent accepts from CRAN+BioC - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -103,6 +103,7 @@ Suggests: r-bioc-affy, r-bioc-bsgenome, r-bioc-cner, r-bioc-cummerbund, + r-bioc-dada2, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, @@ -169,6 +170,8 @@ Recommends: r-cran-haplo.stats Suggests: r-cran-ica +Suggests: r-cran-kaos + Recommends: r-cran-metamix Suggests: r-cran-metap @@ -192,6 +195,8 @@ Recommends: r-cran-phangorn Recommends: r-cran-phylobase +Suggests: r-cran-proc + Recommends: r-cran-pscbs Recommends: r-cran-qqman View it on GitLab: https://salsa.debian.org/blends-team/med/commit/68a8c2ff492b1a3580023e81555bb5a9cdb2650a -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/68a8c2ff492b1a3580023e81555bb5a9cdb2650a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added skewer
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 601764aa by Steffen Möller at 2019-11-08T22:20:12Z Update bio - added skewer - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -366,6 +366,8 @@ Recommends: sickle Recommends: smalr +Suggests: skewer + Recommends: kmc Recommends: king-probe View it on GitLab: https://salsa.debian.org/blends-team/med/commit/601764aaf9a3e4a3362c1230a7f6eae87c7a7e1f -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/601764aaf9a3e4a3362c1230a7f6eae87c7a7e1f You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev - added fast, biobambam2
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 5c5a096c by Steffen Möller at 2019-11-08T18:10:01Z Update bio-dev - added fast, biobambam2 - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -358,6 +358,8 @@ Suggests: libbam-dev Recommends: libqes-dev +Suggests: libfast-perl + Recommends: libfast5-dev, python3-fast5 Recommends: libpbseq-dev, libpbdata-dev, libpbihdf-dev, libblasr-dev @@ -490,4 +492,6 @@ Comment: As explained on the Debian Med mailing list https://lists.debian.org/debian-med/2019/04/msg00036.html there is no point to recommend this package to users -Recommends: libmaus2-dev +Suggests: libmaus2-dev + +Recommends: biobambam2 View it on GitLab: https://salsa.debian.org/blends-team/med/commit/5c5a096ca06fc075c13970cfc58581c65c7dd1b1 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/5c5a096ca06fc075c13970cfc58581c65c7dd1b1 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev with ref to dnaio package
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 77ea4065 by Steffen Möller at 2019-10-31T10:07:59Z Update bio-dev with ref to dnaio package - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -26,7 +26,7 @@ Suggests: python3-pycosat Recommends: python3-screed -Recommends: python3-cutadapt +Recommends: python3-cutadapt, python3-dnaio Recommends: ruby-bio View it on GitLab: https://salsa.debian.org/blends-team/med/commit/77ea40659dc4d29ed627099c3b13d9f3d9f4979a -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/77ea40659dc4d29ed627099c3b13d9f3d9f4979a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/website][master] Preparing for conda-forge channel
Steffen Möller pushed to branch master at Debian Blends Team / website Commits: 59f3bf1f by Steffen Möller at 2019-09-22T12:11:42Z Preparing for conda-forge channel - - - - - 1 changed file: - www/css/sentinel.css View it on GitLab: https://salsa.debian.org/blends-team/website/commit/59f3bf1f7f425300a2eb024450579da80e6047eb -- View it on GitLab: https://salsa.debian.org/blends-team/website/commit/59f3bf1f7f425300a2eb024450579da80e6047eb You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added r-cran-kaos to bio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 62457086 by Steffen Möller at 2019-09-20T21:56:42Z Added r-cran-kaos to bio Could possibly just occur in bio-dev, only. - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1012,6 +1012,8 @@ Recommends: r-cran-distory Recommends: r-cran-drinsight +Recommends: r-cran-kaos + Recommends: r-cran-metamix Recommends: r-cran-phangorn View it on GitLab: https://salsa.debian.org/blends-team/med/commit/624570866e71bc5923070ddc14e2d29e2120e0c9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/624570866e71bc5923070ddc14e2d29e2120e0c9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/website][master] Attempt to add ref to bioconda packages in tasks.xhtml
Steffen Möller pushed to branch master at Debian Blends Team / website Commits: 366e0cd5 by Steffen Möller at 2019-09-18T12:58:12Z Attempt to add ref to bioconda packages in tasks.xhtml - - - - - 1 changed file: - webtools/templates/tasks.xhtml View it on GitLab: https://salsa.debian.org/blends-team/website/commit/366e0cd59e59c64d55498a6f4078d88201facc3d -- View it on GitLab: https://salsa.debian.org/blends-team/website/commit/366e0cd59e59c64d55498a6f4078d88201facc3d You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added a couple of recent R packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: dd57d389 by Steffen Möller at 2019-08-22T12:47:38Z Added a couple of recent R packages - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -300,10 +300,6 @@ Recommends: cd-hit Recommends: cufflinks -Recommends: r-bioc-cummerbund - -Suggests: r-bioc-tximport - Recommends: eigensoft Recommends: grinder @@ -960,13 +956,11 @@ Recommends: r-bioc-rtracklayer, r-bioc-gviz, r-bioc-biostrings, r-bioc-annotate, Recommends: r-bioc-deseq2, r-bioc-dnacopy, r-bioc-geneplotter -Suggests: r-cran-corrplot - -Recommends: r-bioc-impute +Recommends: r-bioc-cummerbund -Recommends: r-bioc-mergeomics +Suggests: r-bioc-tximport -Recommends: r-bioc-metagenomeseq, r-bioc-phyloseq +Suggests: r-cran-corrplot Recommends: r-bioc-ebseq @@ -974,6 +968,16 @@ Suggests: r-cran-forecast Suggests: r-cran-gprofiler +Suggests: r-cran-fitdistrplus + +Recommends: r-cran-tsne + +Recommends: r-bioc-impute + +Recommends: r-bioc-mergeomics + +Recommends: r-bioc-metagenomeseq, r-bioc-phyloseq + Recommends: r-bioc-limma Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr @@ -1008,7 +1012,9 @@ Recommends: r-cran-pscbs Suggests: r-cran-boolnet -Recommends: r-cran-seurat, r-cran-sctransform +Suggests: r-cran-sctransform + +Recommends: r-cran-seurat Recommends: r-cran-seqinr View it on GitLab: https://salsa.debian.org/blends-team/med/commit/dd57d389b52bc7e4d62e935bc11721aa8bb3903a -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/dd57d389b52bc7e4d62e935bc11721aa8bb3903a You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update python- to python3, some more recent packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: c85afb9d by Steffen Möller at 2019-08-22T12:55:26Z Update python- to python3, some more recent packages Some maybe better show up only on bio-dev - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -50,7 +50,7 @@ Recommends: boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix Suggest: tophat-recondition -Recommends: maqview +Recommends: maqview Recommends: blasr @@ -258,8 +258,6 @@ Recommends: acedb-other Recommends: blixem, dotter, belvu -Recommends: python-cogent - Recommends: paml Recommends: velvetoptimiser @@ -916,25 +914,33 @@ Recommends: psipred Recommends: pssh2 -Recommends: python3-pybel +Suggests: python3-alignlib + +Recommends: python3-cogent Recommends: pycorrfit Recommends: pyscanfcs -Recommends: python3-deeptools +Recommends: python3-deeptools, python3-deeptoolsintervals Recommends: python3-geneimpacts Recommends: python3-gffutils +Suggests: python3-loompy + +Recommends: python3-pybel + +Suggests: python3-py2bit + Recommends: python3-pybedtools Recommends: python3-sqt -Recommends: python-reaper +Recommends: python3-reaper -Recommends: python-treetime +Recommends: python3-treetime Recommends: qcumber @@ -1243,9 +1249,9 @@ Recommends: r-cran-tcr, r-cran-tigger, r-cran-alakazam, r-cran-shazam, igor, r-c Recommends: ncbi-igblast -Suggests: python-pyflow +Suggests: python3-pyflow -Recommends: pigx-rnaseq +Recommends: pigx-rnaseq, pigx-scrnaseq X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here @@ -2598,7 +2604,7 @@ Pkg-Description: annotate genetic variants detected from diverse genomes "variants reduction" procedure, making it practical to handle hundreds of human genomes in a day. -Recommends: python-orange +Recommends: python3-orange License: GPLv3 Homepage: http://orange.biolab.si/ Pkg-URL: http://orange.biolab.si/debian/ View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c85afb9d56a3ff1de5d54ac94c75f45ebdcb507d -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c85afb9d56a3ff1de5d54ac94c75f45ebdcb507d You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added R packages
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 6628979d by Steffen Möller at 2019-08-20T12:56:21Z Update bio - added R packages - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -980,10 +980,14 @@ Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, r-bioc-go.db +Suggests: r-bioc-qusage + Suggests: r-bioc-savr Recommends: r-bioc-tfbstools, r-bioc-cner +Suggests: r-bioc-tximport + Suggests: r-cran-qqman Recommends: r-cran-rotl @@ -994,6 +998,8 @@ Recommends: r-cran-adegenet, r-cran-adephylo Recommends: r-cran-distory +Recommends: r-cran-drinsight + Recommends: r-cran-metamix Recommends: r-cran-phangorn View it on GitLab: https://salsa.debian.org/blends-team/med/commit/6628979d37a09d3134e367b1f1284f1ab8fa32e9 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/6628979d37a09d3134e367b1f1284f1ab8fa32e9 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev with cthreadpool-dev
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 0ea61cb1 by Steffen Möller at 2019-08-14T14:05:40Z Update bio-dev with cthreadpool-dev Maintained in d/science but a dependency for vienna-rna - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -325,6 +325,8 @@ Recommends: python3-bx Recommends: toil, galaxy-lib +Suggets: cthreadpool-dev + Recommends: libbio-eutilities-perl Recommends: libseqlib-dev View it on GitLab: https://salsa.debian.org/blends-team/med/commit/0ea61cb18ed1b81d8ce343798661fd7975e0bcef -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/0ea61cb18ed1b81d8ce343798661fd7975e0bcef You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-dev
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 25bad5f1 by Steffen Möller at 2019-08-12T12:00:54Z Update bio-dev Added three packages of which libgclib was just accepted. - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -387,6 +387,10 @@ Recommends: python3-cgecore Recommends: python3-deeptools, python3-deeptoolsintervals, python3-py2bit +Recommends: python3-loompy + +Recommends: gffread, libgclib + Ignore: golang-github-biogo-hts-dev Comment: As explained on the Debian Med mailing list https://lists.debian.org/debian-med/2019/04/msg00036.html View it on GitLab: https://salsa.debian.org/blends-team/med/commit/25bad5f1b931bf1ccd6ffedcbf9c59366cdcf000 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/25bad5f1b931bf1ccd6ffedcbf9c59366cdcf000 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added pigx-rnaseq
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: f0332039 by Steffen Möller at 2019-08-11T15:36:56Z Added pigx-rnaseq - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1231,6 +1231,8 @@ Recommends: ncbi-igblast Suggests: python-pyflow +Recommends: pigx-rnaseq + X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here Recommends: copycat View it on GitLab: https://salsa.debian.org/blends-team/med/commit/f03320396e2915bdd5a09806c0d222d1cb3009d4 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/f03320396e2915bdd5a09806c0d222d1cb3009d4 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio with python3-deeptools
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: a5eeec77 by Steffen Möller at 2019-08-11T15:30:43Z Update bio with python3-deeptools Deeptools should not only appear on -dev - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -926,6 +926,8 @@ Recommends: pycorrfit Recommends: pyscanfcs +Recommends: python3-deeptools + Recommends: python3-geneimpacts Recommends: python3-gffutils View it on GitLab: https://salsa.debian.org/blends-team/med/commit/a5eeec77b1994c15afbf9cb9becf7e3073bdec8b -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/a5eeec77b1994c15afbf9cb9becf7e3073bdec8b You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Updated bio-dev with deeptools
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: febc74ad by Steffen Möller at 2019-08-11T15:28:38Z Updated bio-dev with deeptools and immediate dependencies - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -385,6 +385,8 @@ Recommends: libnexml-java Recommends: python3-cgecore +Recommends: python3-deeptools, python3-deeptoolsintervals, python3-py2bit + Ignore: golang-github-biogo-hts-dev Comment: As explained on the Debian Med mailing list https://lists.debian.org/debian-med/2019/04/msg00036.html View it on GitLab: https://salsa.debian.org/blends-team/med/commit/febc74ad251ab3726e213f256bdd96ff0811c211 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/febc74ad251ab3726e213f256bdd96ff0811c211 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Updated med/bio for r-bioc-tximport
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 1c42e2f1 by Steffen Möller at 2019-08-06T09:42:10Z Updated med/bio for r-bioc-tximport - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -302,6 +302,8 @@ Recommends: cufflinks Recommends: r-bioc-cummerbund +Suggests: r-bioc-tximport + Recommends: eigensoft Recommends: grinder View it on GitLab: https://salsa.debian.org/blends-team/med/commit/1c42e2f15472c1178003fb0a39f243f58a83b169 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/1c42e2f15472c1178003fb0a39f243f58a83b169 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Updated bio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 7381f7ec by Steffen Möller at 2019-08-05T18:17:12Z Updated bio - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -350,7 +350,7 @@ Recommends: microbiomeutil, chimeraslayer, nast-ier, wigeon Recommends: minia -Recommends: trimmomatic +Recommends: trimmomatic, trim-galore Recommends: saint @@ -956,6 +956,8 @@ Recommends: r-bioc-rtracklayer, r-bioc-gviz, r-bioc-biostrings, r-bioc-annotate, Recommends: r-bioc-deseq2, r-bioc-dnacopy, r-bioc-geneplotter +Suggests: r-cran-corrplot + Recommends: r-bioc-impute Recommends: r-bioc-mergeomics @@ -966,6 +968,8 @@ Recommends: r-bioc-ebseq Suggests: r-cran-forecast +Suggests: r-cran-gprofiler + Recommends: r-bioc-limma Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr View it on GitLab: https://salsa.debian.org/blends-team/med/commit/7381f7ec61aa52d67784ed4a33df1b823efbac8d -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/7381f7ec61aa52d67784ed4a33df1b823efbac8d You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added python-pyflow
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: ffac2a47 by Steffen Möller at 2019-08-02T16:46:17Z Added python-pyflow Somewhat problematic since this has apparently not yet seen the light of Python3 - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1221,6 +1221,8 @@ Recommends: r-cran-tcr, r-cran-tigger, r-cran-alakazam, r-cran-shazam, igor, r-c Recommends: ncbi-igblast +Suggests: python-pyflow + X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here Recommends: copycat View it on GitLab: https://salsa.debian.org/blends-team/med/commit/ffac2a472d452a23c2ccbcf9bdf14122d2c874bc -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/ffac2a472d452a23c2ccbcf9bdf14122d2c874bc You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Updated bio-dev with python3-pycosat
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 57798c0b by Steffen Möller at 2019-08-02T13:57:30Z Updated bio-dev with python3-pycosat Found locally. - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -22,6 +22,8 @@ Suggests: python3-biopython-sql, python-biopython-doc Recommends: python-cogent +Suggests: python3-pycosat + Recommends: python-screed Recommends: python3-cutadapt View it on GitLab: https://salsa.debian.org/blends-team/med/commit/57798c0b87cfe676c2dae7406afb780df7a32e63 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/57798c0b87cfe676c2dae7406afb780df7a32e63 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added packages referenced for bcbio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 33de5479 by Steffen Möller at 2019-08-02T10:57:43Z Added packages referenced for bcbio - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -48,6 +48,8 @@ Remark: Dead upstream Recommends: boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix, tophat, wise +Suggest: tophat-recondition + Recommends: maqview Recommends: blasr @@ -284,8 +286,12 @@ Recommends: ballview Recommends: pynast +Recommends: pizzly + Recommends: raxml +Recommends: seqcluster + Recommends: mlv-smile Suggests: cain @@ -1124,6 +1130,8 @@ Recommends: stacks Recommends: strap, strap-base Language: Java +Suggests: strelka + Recommends: stringtie Recommends: subread View it on GitLab: https://salsa.debian.org/blends-team/med/commit/33de54790d32c45221809d8c9ef9cb899f7e2d96 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/33de54790d32c45221809d8c9ef9cb899f7e2d96 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Updated bio-dev with python3-alignlib
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 810f711a by Steffen Möller at 2019-08-01T22:22:22Z Updated bio-dev with python3-alignlib - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -357,6 +357,8 @@ Recommends: python3-airr, python3-presto Suggests: libmilib-java, vdjtools +Suggests: python3-alignlib + Recommends: python3-bcbio Suggests: python3-ctdopts, ctdconverter View it on GitLab: https://salsa.debian.org/blends-team/med/commit/810f711adf118d20316cb8a3286967f0f7350a14 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/810f711adf118d20316cb8a3286967f0f7350a14 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added wham-align to bio-ngs
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 65b8049c by Steffen Möller at 2019-07-10T17:51:17Z Added wham-align to bio-ngs - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -13,6 +13,7 @@ Recommends: mhap, fastx-toolkit, last-align, + wham-align, maq, picard-tools, r-bioc-hilbertvis, View it on GitLab: https://salsa.debian.org/blends-team/med/commit/65b8049c78d8090f7f3b48ae75aa64cf16af3c45 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/65b8049c78d8090f7f3b48ae75aa64cf16af3c45 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added wham-align to bio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 9f49d642 by Steffen Möller at 2019-07-10T17:50:29Z Added wham-align to bio - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -96,6 +96,8 @@ Recommends: seaview Recommends: sigma-align +Recommends: wham-align + Recommends: emboss Recommends: embassy-domalign, embassy-domainatrix, embassy-domsearch, embassy-phylip View it on GitLab: https://salsa.debian.org/blends-team/med/commit/9f49d6423285c252fde6a5e07a94ed370b02ae77 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/9f49d6423285c252fde6a5e07a94ed370b02ae77 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added python3-geneimpacts
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 04a43ece by Steffen Möller at 2019-05-29T17:26:26Z Added python3-geneimpacts - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -912,6 +912,8 @@ Recommends: pycorrfit Recommends: pyscanfcs +Recommends: python3-geneimpacts + Recommends: python3-gffutils Recommends: python3-pybedtools View it on GitLab: https://salsa.debian.org/blends-team/med/commit/04a43ece5c6467dcc8c739d3e5002e66eb148942 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/04a43ece5c6467dcc8c739d3e5002e66eb148942 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio for the advent of r-cran-webgestaltr
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 19a9f4db by Steffen Möller at 2019-05-18T20:14:34Z Update bio for the advent of r-cran-webgestaltr - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -984,6 +984,8 @@ Recommends: r-cran-seqinr Recommends: r-cran-vegan +Recommends: r-cran-webgestaltr + Suggests: r-cran-pheatmap Recommends: r-other-hms-dbmi-spp View it on GitLab: https://salsa.debian.org/blends-team/med/commit/19a9f4dbb538a489bc37e298d2b6f28da230a61c -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/19a9f4dbb538a489bc37e298d2b6f28da230a61c You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added ref to libbigwig
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 17ef7166 by Steffen Möller at 2019-05-04T10:33:36Z Added ref to libbigwig - - - - - 1 changed file: - tasks/bio-dev Changes: = tasks/bio-dev = @@ -156,6 +156,8 @@ Recommends: libbamtools-dev Recommends: libpbbam-dev +Recommends: libbigwig-dev + Recommends: libbio-das-lite-perl Recommends: python-mmtk View it on GitLab: https://salsa.debian.org/blends-team/med/commit/17ef7166d9c810d2050d46065d8bf9660b40a184 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/17ef7166d9c810d2050d46065d8bf9660b40a184 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs - stringtie was just accepted
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 1b7e4f31 by Steffen Möller at 2019-04-10T20:45:06Z Update bio-ngs - stringtie was just accepted - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -216,6 +216,8 @@ Recommends: sprai Recommends: sra-toolkit +Recommends: stringtie + Recommends: tophat Recommends: transrate-tools View it on GitLab: https://salsa.debian.org/blends-team/med/commit/1b7e4f316b6f355b51baad005b89dcb4b4c98d4d -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/1b7e4f316b6f355b51baad005b89dcb4b4c98d4d You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added StringTie to bio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: beb97cf5 by Steffen Möller at 2019-03-16T18:11:46Z Added StringTie to bio - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -1088,6 +1088,8 @@ Recommends: stacks Recommends: strap, strap-base Language: Java +Recommends: stringtie + Recommends: subread Recommends: suitename View it on GitLab: https://salsa.debian.org/blends-team/med/commit/beb97cf58ff2c170a8a1ad5d7e00746ca5d0a364 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/beb97cf58ff2c170a8a1ad5d7e00746ca5d0a364 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/website] Pushed new branch show-topics
Steffen Möller pushed new branch show-topics at Debian Blends Team / website -- View it on GitLab: https://salsa.debian.org/blends-team/website/tree/show-topics You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Added braker to bio
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: fe811cef by Steffen Möller at 2019-02-04T20:28:43Z Added braker to bio - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -480,6 +480,8 @@ Recommends: blobology Recommends: bio-rainbow +Recommends: braker + Recommends: card-rgi Recommends: cassiopee View it on GitLab: https://salsa.debian.org/blends-team/med/commit/fe811cef86c58bfbd7c556af214addd0d2b348ce -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/fe811cef86c58bfbd7c556af214addd0d2b348ce You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio - added bcbio package
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: e4d3e843 by Steffen Möller at 2019-01-21T22:19:45Z Update bio - added bcbio package - - - - - 1 changed file: - tasks/bio Changes: = tasks/bio = @@ -460,8 +460,7 @@ Recommends: bagpipe Recommends: bax2bam -Recommends: bcbio, python3-bcbio -# bcbio is the source package name and does not show up +Recommends: bcbio Recommends: bcftools View it on GitLab: https://salsa.debian.org/blends-team/med/commit/e4d3e843c799f68114245b0246331ac4555c2471 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/e4d3e843c799f68114245b0246331ac4555c2471 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
[Blends-commit] [Git][blends-team/med][master] Update bio-ngs with bcbio, samblaster
Steffen Möller pushed to branch master at Debian Blends Team / med Commits: 3c160ca1 by Steffen Möller at 2019-01-21T22:18:42Z Update bio-ngs with bcbio, samblaster - - - - - 1 changed file: - tasks/bio-ngs Changes: = tasks/bio-ngs = @@ -70,6 +70,8 @@ Recommends: last-align, maq, ssake, velvet | velvet-long Recommends: bamtools +Recommends: bcbio + Recommends: bcftools WNPP: 804007 @@ -179,6 +181,8 @@ Recommends: salmon Recommends: sambamba +Recommends: samblaster + Recommends: scythe Recommends: seqprep View it on GitLab: https://salsa.debian.org/blends-team/med/commit/3c160ca12057531962a781ac7db4693c77d6f7a5 -- View it on GitLab: https://salsa.debian.org/blends-team/med/commit/3c160ca12057531962a781ac7db4693c77d6f7a5 You're receiving this email because of your account on salsa.debian.org. ___ Blends-commit mailing list Blends-commit@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/blends-commit
