[ccp4bb] Multiple postdoctoral and Ph.D. positions at IBS (Grenoble)

2024-06-26 Thread Elke De Zitter
Dear all, 

We have four immediate openings for postdoctoral researchers and one opening 
for a Ph.D. student in the DYNAMOP group at the Institute for Structural 
Biology in Grenoble (France). 

The first postdoctoral project focuses on the development and optimization of 
bio-scavengers targeting toxic compounds. The researcher with use time-resolved 
crystallography and in silico design methodologies. Interested candidates can 
find more information at [ 
https://www.ibs.fr/en/careers/job-offers/two-year-postdoctoral-position-for-the-dynamop-group-time-resolved
 | 
https://www.ibs.fr/en/careers/job-offers/two-year-postdoctoral-position-for-the-dynamop-group-time-resolved
 ] (application deadline: 12/07/2024 ). 

In the second postdoctoral project, the researcher will study the binding of 
toxic compounds to their physiological target and subsequent chemical 
reactivation via time-resolved crystallography. 

The third postdoctoral project is focused on the development of an experimental 
approach for the determination of the photoinduced structural dynamics of 
photosensitive biomolecules both in vitro and in cell using time-resolved X-ray 
scattering techniques. More information and the application procedure can be 
found on [ 
https://emploi.cnrs.fr/Offres/CDD/UMR5075-VALLAN-024/Default.aspx?lang=EN | 
https://www.ibs.fr/en/careers/job-offers/two-year-postdoctoral-position-for-the-dynamop-group-time-resolved
 ] (application deadline 30/06/2024). 

In the fourth postdoctoral project, the researcher will apply serial 
diffraction techniques (SSX, SFX, SED) to structurally study natural and 
recombinant protein nanocrystals 

Last, a 3-year funded PhD fellowship is available to explore the structural 
dynamics of the orange carotenoid protein by means of time-resolved serial 
crystallography. 

Applicants for the postdoctoral positions must have obtained a Ph.D. in 
structural biology, biophysics, biochemistry, physics, chemistry, or a related 
field. The candidates must show a track-record of publications in peer-reviewed 
journals. Applicants for the Ph.D. position are expected to have a master's 
degree in one of the above mentioned fields. All candidates are expected to be 
proficient in English and highly motivated to learn new skills. The candidates 
need to be a good team player as well as being capable of working 
independently. 

For inquiries regarding the positions and application processes, please contact 
Elke De Zitter ( [ mailto:elke.de-zit...@ibs.fr | elke.de-zit...@ibs.fr ] ), 
Martin Weik ( [ mailto:martin.w...@ibs.fr | martin.w...@ibs.fr ] ), Giorgio 
Schiro ( [ mailto:giorgio.sch...@ibs.fr | giorgio.sch...@ibs.fr ] ) or 
Jacques-Philippe Colletier ( [ mailto:jacques-philippe.collet...@ibs.fr | 
jacques-philippe.collet...@ibs.fr ] ) 

Best regards, 
Martin, Giorgio, Jacques-Philippe and Elke 

Elke De Zitter 
Institut de Biologie Structurale - IBS 
group DYNAMOP 
71 avenue des Martyrs 
38044 Grenoble Cedex 9, France 
+33 4 57 42 86 56 
elke.de-zit...@ibs.fr 



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Re: [ccp4bb] mystery blob!

2024-06-26 Thread Eleanor Dodson
Thank you all for the ideas!

On Wed, 26 Jun 2024 at 16:49, MARCHOT Pascale 
wrote:

>
> *One of these green little gosts?*
>
> *P *
>
> --
> *De :* CCP4 bulletin board  de la part de Eleanor
> Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk>
> *Envoyé :* mercredi 26 juin 2024 17:09
> *À :* CCP4BB@JISCMAIL.AC.UK
> *Objet :* [ccp4bb] mystery blob!
>
>
> Ce mail provient de l'extérieur, restons vigilants
> ANY ideas what this could be
>
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
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Re: [ccp4bb] mystery blob!

2024-06-26 Thread Yves Muller

a HEPES molecule?

Regards,

Yves

--

Prof. Yves Muller   Phone: +49-(0)-9131-8523082, 8523081
Lehrstuhl fuer BiotechnikFAX:   +49-(0)-9131-8523080
www.biotechnik.nat.fau.de
Department Biologie
Friedrich-Alexander-Universität, Erlangen-Nuernberg
Im MVC, Henkestrasse 91, D-91052 Erlangen




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Re: [ccp4bb] mystery blob!

2024-06-26 Thread Tom Huxford
Dear Eleanor,

Perhaps a PMSF-EG adduct?

Tom Huxford.

==
Tom Huxford
Structural Biochemistry Laboratory
Department of Chemistry & Biochemistry
San Diego State University
(619) 594-1606

> On Jun 26, 2024, at 8:09 AM, Eleanor Dodson 
> <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote:
> 
> ANY ideas what this could be
> 
> 
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
> 
> 




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Re: [ccp4bb] CCP4 Cloud Server Structure Prediction Task Unavailable

2024-06-26 Thread YASH MISRA PHD222012
Dear Harry,

Thank you for your email and the information regarding the CCP4 Cloud
server. It was really helpful.

On Wed, Jun 26, 2024 at 2:36 PM Harry Powell <
193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote:

> Hi
>
> You probably need to try again later...
>
> It looks to me as if the CCP4 Cloud server (for “remote”) is down for some
> reason - I just tried to run it and I get a pop-up that says “CCP4 Cloud
> Maintenance”, that includes the text “failed to connect”.
>
> I think that the “structure prediction” task is not available for CCP4
> Cloud Desktop unless you have AlphaFold set up to run locally on your
> machine; for most users, this is not very likely.
>
> Generally, though, I’ve found that using CCP4 Cloud is by far the easiest
> way to run AlphaFold predictions (rather than for downloading previously
> predicted models from the DB).
>
> Harry
>
> > On 26 Jun 2024, at 06:00, YASH MISRA PHD222012 <
> yashmisr...@iisertvm.ac.in> wrote:
> >
> > Dear all,
> >
> > Can someone help me with this?
> >
> > Until yesterday it was working fine but today when I tried running this
> task I am getting the following error. I tried accessing this task via.
> https://cloud.ccp4.ac.uk/ using my Windows system as well as LInux but to
> no avail.
> >
> > 
> >
> > I also tried using the CCP4 Cloud Desktop but it showed me the following
> error:
> >
> > 
> >
> > I am not sure which software to install for the latter.
> >
> > Any assistance would be appreciated.
> >
> > Thank you.
> >
> > Kind regards
> >
> > Yash Misra
> > Ph.D. Scholar
> > Dr. R. Natesh Lab
> > School of Biology
> > Indian Institute of Science Education and Research- Thiruvananthapuram
> > Kerala
> > INDIA
> >
> > To unsubscribe from the CCP4BB list, click the following link:
> > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
> >
>
> 
>
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-- 
Thank you.

*Kind regards*


*Yash Misra*
*Ph.D. Scholar*

*Dr. R. Natesh Lab*
*School of Biology*

*Indian Institute of Science Education and Research- Thiruvananthapuram*

*Kerala*
*INDIA*



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Re: [ccp4bb] CCP4 Cloud Server Structure Prediction Task Unavailable

2024-06-26 Thread Harry Powell
Hi

You probably need to try again later...

It looks to me as if the CCP4 Cloud server (for “remote”) is down for some 
reason - I just tried to run it and I get a pop-up that says “CCP4 Cloud 
Maintenance”, that includes the text “failed to connect”.

I think that the “structure prediction” task is not available for CCP4 Cloud 
Desktop unless you have AlphaFold set up to run locally on your machine; for 
most users, this is not very likely.

Generally, though, I’ve found that using CCP4 Cloud is by far the easiest way 
to run AlphaFold predictions (rather than for downloading previously predicted 
models from the DB).

Harry

> On 26 Jun 2024, at 06:00, YASH MISRA PHD222012  
> wrote:
> 
> Dear all,
> 
> Can someone help me with this?
> 
> Until yesterday it was working fine but today when I tried running this task 
> I am getting the following error. I tried accessing this task via. 
> https://cloud.ccp4.ac.uk/ using my Windows system as well as LInux but to no 
> avail. 
> 
> 
> 
> I also tried using the CCP4 Cloud Desktop but it showed me the following 
> error:
> 
> 
> 
> I am not sure which software to install for the latter.
> 
> Any assistance would be appreciated.
> 
> Thank you.
> 
> Kind regards
> 
> Yash Misra
> Ph.D. Scholar
> Dr. R. Natesh Lab
> School of Biology
> Indian Institute of Science Education and Research- Thiruvananthapuram
> Kerala
> INDIA
>  
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
> 



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