[ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
Brilliant - thanks Nat!! Easy to work around that feature. And thanks Nick!! Original Message Subject:Re: [ccp4bb] Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800 From: Nat Echols To: Frank von Delft Using any recent Phenix distribution: labelit.png file_name For reasons unknown to me, the output is named "plain.png" - I will bug Nick about this. On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft wrote: Hello all - anybody know an easy way to convert CBF images (Pilatus) into something lossless like tiff or png? Ideally *easy* as in r e a l l y e a s y and not requiring extensive installation of dependencies and stuff. Because then I might as well write my own stuff using cbflib and PIL in python. Thanks! phx
Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hi Nat!
How recent is recent? From today's 'phenix-online.org':
"New Phenix version 1.8.1 now available", but
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
DX-CORRECTIONS.cbf
Traceback (most recent call last):
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 27, in
OV = overlay_plain(infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 6, in __init__
OverlayDriverClass.__init__(self,infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
line 19, in __init__
self.I = GenericImageWorker(infile,binning=graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
line 12, in __init__
images = ImageFiles(imagenames,labelit_commands)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 184, in __init__
self.filenames = FileNames(arg_module,phil_params)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 70, in __init__
self.interface3_parse_command()
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 138, in interface3_parse_command
self.interface3_FN_factory(os.path.abspath(file),error_message="File
name not accepted")
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 127, in interface3_FN_factory
raise Exception("Input error: "+error_message)
Exception: Input error: File name not accepted
Compared to:
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
Adxv Version 1.9.8
Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
Recognized CBF format data.
Warning: Could not find diffrn_frame_data or diffrn_data_frame
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
DX-CORRECTIONS.tiff
DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
592KB 0.000u 0:00.000
Cheers,
Tim
On 01/10/2013 09:59 PM, Frank von Delft wrote:
> Brilliant - thanks Nat!! Easy to work around that feature.
>
> And thanks Nick!!
>
>
>
>
> Original Message Subject: Re: [ccp4bb]
> Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
> From: Nat Echols To: Frank von
> Delft
>
>
>
> Using any recent Phenix distribution:
>
> labelit.png file_name
>
> For reasons unknown to me, the output is named "plain.png" - I
> will bug Nick about this.
>
> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
> wrote:
>> Hello all - anybody know an easy way to convert CBF images
>> (Pilatus) into something lossless like tiff or png?
>>
>> Ideally *easy* as in r e a l l y e a s y and not requiring
>> extensive installation of dependencies and stuff. Because then I
>> might as well write my own stuff using cbflib and PIL in python.
>>
>> Thanks! phx
>
>
>
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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Version: GnuPG v1.4.12 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
iD8DBQFQ8D8kUxlJ7aRr7hoRAkcsAJ9Z4JmZ3zAvFYDRMaGbzunMYTjLNACfQWBP
s3YM17LqF9zvCsAK8ezG8xQ=
=hXlq
-END PGP SIGNATURE-
Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
I got that error blurb too when I run without an image on the
commandline. Not very elegant.
Try:
labelit.png --help
On 11/01/2013 16:34, Tim Gruene wrote:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hi Nat!
How recent is recent? From today's 'phenix-online.org':
"New Phenix version 1.8.1 now available", but
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
DX-CORRECTIONS.cbf
Traceback (most recent call last):
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 27, in
OV = overlay_plain(infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 6, in __init__
OverlayDriverClass.__init__(self,infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
line 19, in __init__
self.I = GenericImageWorker(infile,binning=graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
line 12, in __init__
images = ImageFiles(imagenames,labelit_commands)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 184, in __init__
self.filenames = FileNames(arg_module,phil_params)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 70, in __init__
self.interface3_parse_command()
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 138, in interface3_parse_command
self.interface3_FN_factory(os.path.abspath(file),error_message="File
name not accepted")
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 127, in interface3_FN_factory
raise Exception("Input error: "+error_message)
Exception: Input error: File name not accepted
Compared to:
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
Adxv Version 1.9.8
Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
Recognized CBF format data.
Warning: Could not find diffrn_frame_data or diffrn_data_frame
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
DX-CORRECTIONS.tiff
DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
592KB 0.000u 0:00.000
Cheers,
Tim
On 01/10/2013 09:59 PM, Frank von Delft wrote:
Brilliant - thanks Nat!! Easy to work around that feature.
And thanks Nick!!
Original Message Subject: Re: [ccp4bb]
Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
From: Nat Echols To: Frank von
Delft
Using any recent Phenix distribution:
labelit.png file_name
For reasons unknown to me, the output is named "plain.png" - I
will bug Nick about this.
On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
wrote:
Hello all - anybody know an easy way to convert CBF images
(Pilatus) into something lossless like tiff or png?
Ideally *easy* as in r e a l l y e a s y and not requiring
extensive installation of dependencies and stuff. Because then I
might as well write my own stuff using cbflib and PIL in python.
Thanks! phx
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
-BEGIN PGP SIGNATURE-
Version: GnuPG v1.4.12 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
iD8DBQFQ8D8kUxlJ7aRr7hoRAkcsAJ9Z4JmZ3zAvFYDRMaGbzunMYTjLNACfQWBP
s3YM17LqF9zvCsAK8ezG8xQ=
=hXlq
-END PGP SIGNATURE-
Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
I think the help message refers to another program. Anyway, it's an
extremely simple script - having examined the code, the command-line
invocation is:
labelit.png input_file [output_file]
and that's it - no other options available. But Nick or I will fix it
so it prints something more useful if run without arguments.
-Nat
On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft
wrote:
> I got that error blurb too when I run without an image on the commandline.
> Not very elegant.
>
> Try:
> labelit.png --help
>
>
>
>
> On 11/01/2013 16:34, Tim Gruene wrote:
>>
>> -BEGIN PGP SIGNED MESSAGE-
>> Hash: SHA1
>>
>> Hi Nat!
>>
>> How recent is recent? From today's 'phenix-online.org':
>> "New Phenix version 1.8.1 now available", but
>>
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
>> DX-CORRECTIONS.cbf
>> Traceback (most recent call last):
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>> line 27, in
>> OV = overlay_plain(infile,graphics_bin)
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>> line 6, in __init__
>> OverlayDriverClass.__init__(self,infile,graphics_bin)
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
>> line 19, in __init__
>> self.I = GenericImageWorker(infile,binning=graphics_bin)
>>File
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
>> line 12, in __init__
>> images = ImageFiles(imagenames,labelit_commands)
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>> line 184, in __init__
>> self.filenames = FileNames(arg_module,phil_params)
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>> line 70, in __init__
>> self.interface3_parse_command()
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>> line 138, in interface3_parse_command
>>
>> self.interface3_FN_factory(os.path.abspath(file),error_message="File
>> name not accepted")
>>File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>> line 127, in interface3_FN_factory
>> raise Exception("Input error: "+error_message)
>> Exception: Input error: File name not accepted
>>
>> Compared to:
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
>> DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
>> Adxv Version 1.9.8
>> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
>> Recognized CBF format data.
>> Warning: Could not find diffrn_frame_data or diffrn_data_frame
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
>> DX-CORRECTIONS.tiff
>> DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
>> 592KB 0.000u 0:00.000
>>
>> Cheers,
>> Tim
>>
>> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>>>
>>> Brilliant - thanks Nat!! Easy to work around that feature.
>>>
>>> And thanks Nick!!
>>>
>>>
>>>
>>>
>>> Original Message Subject: Re: [ccp4bb]
>>> Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
>>> From: Nat Echols To: Frank von
>>> Delft
>>
>>
>>
>>
>>
>>
>>>
>>>
>>> Using any recent Phenix distribution:
>>>
>>> labelit.png file_name
>>>
>>> For reasons unknown to me, the output is named "plain.png" - I
>>> will bug Nick about this.
>>>
>>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
>>> wrote:
Hello all - anybody know an easy way to convert CBF images
(Pilatus) into something lossless like tiff or png?
Ideally *easy* as in r e a l l y e a s y and not requiring
extensive installation of dependencies and stuff. Because then I
might as well write my own stuff using cbflib and PIL in python.
Thanks! phx
>>>
>>>
>>>
>>>
>> - -- - --
>> Dr Tim Gruene
>> Institut fuer anorganische Chemie
>> Tammannstr. 4
>> D-37077 Goettingen
>>
>> GPG Key ID = A46BEE1A
>>
>> -BEGIN PGP SIGNATURE-
>> Version: GnuPG v1.4.12 (GNU/Linux)
>> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>>
>> iD8DBQFQ8D8kUxlJ7aRr7hoRAkcsAJ9Z4JmZ3zAvFYDRMaGbzunMYTjLNACfQWBP
>> s3YM17LqF9zvCsAK8ezG8xQ=
>> =hXlq
>> -END PGP SIGNATURE-
Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
The formatting of icedove probably created confusion, but these error
message come from running labelit.png WITH the file DX-CORRECTIONS.cbf
as one and only command line option and no output is created. adxv has
not problem dealing with XDS cbf-files.
Tim
On 01/11/2013 06:43 PM, Nat Echols wrote:
> I think the help message refers to another program. Anyway, it's
> an extremely simple script - having examined the code, the
> command-line invocation is:
>
> labelit.png input_file [output_file]
>
> and that's it - no other options available. But Nick or I will fix
> it so it prints something more useful if run without arguments.
>
> -Nat
>
> On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft
> wrote:
>> I got that error blurb too when I run without an image on the
>> commandline. Not very elegant.
>>
>> Try: labelit.png --help
>>
>>
>>
>>
>> On 11/01/2013 16:34, Tim Gruene wrote:
>>>
> Hi Nat!
>
> How recent is recent? From today's 'phenix-online.org': "New Phenix
> version 1.8.1 now available", but
>
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$
> labelit.png_1.8.1-1168 DX-CORRECTIONS.cbf Traceback (most recent
> call last): File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>
>
line 27, in
> OV = overlay_plain(infile,graphics_bin) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>
>
line 6, in __init__
> OverlayDriverClass.__init__(self,infile,graphics_bin) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
>
>
line 19, in __init__
> self.I = GenericImageWorker(infile,binning=graphics_bin) File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
>
>
line 12, in __init__
> images = ImageFiles(imagenames,labelit_commands) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>
>
line 184, in __init__
> self.filenames = FileNames(arg_module,phil_params) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>
>
line 70, in __init__
> self.interface3_parse_command() File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>
>
line 138, in interface3_parse_command
>
> self.interface3_FN_factory(os.path.abspath(file),error_message="File
>
>
name not accepted")
> File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>
>
line 127, in interface3_FN_factory
> raise Exception("Input error: "+error_message) Exception: Input
> error: File name not accepted
>
> Compared to: tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv
> -sa DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff Adxv Version 1.9.8
> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems
> Corporation Recognized CBF format data. Warning: Could not find
> diffrn_frame_data or diffrn_data_frame
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
> DX-CORRECTIONS.tiff DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0
> 8-bit PseudoClass 256c 592KB 0.000u 0:00.000
>
> Cheers, Tim
>
> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>
> Brilliant - thanks Nat!! Easy to work around that
> feature.
>
> And thanks Nick!!
>
>
>
>
> Original Message Subject: Re:
> [ccp4bb] Convert cbf to png/tiff? Date: Thu, 10 Jan
> 2013 12:47:21 -0800 From: Nat Echols
> To: Frank von Delft
>
>
>
>
>
>
>
>
>
> Using any recent Phenix distribution:
>
> labelit.png file_name
>
> For reasons unknown to me, the output is named "plain.png"
> - I will bug Nick about this.
>
> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
> wrote:
>>
>> Hello all - anybody know an easy way to convert CBF
>> images (Pilatus) into something lossless like tiff or
>> png?
>>
>> Ideally *easy* as in r e a l l y e a s y and not
>> requiring extensive installation of dependencies and
>> stuff. Because then I might as well write my own stuff
>> using cbflib and PIL in python.
>>
>> Thanks! phx
>
>
>
>
> -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr.
> 4 D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
-BEGIN PGP SIGNATURE-
Version: GnuPG v1.4.12 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
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xwICsaEtz3Phoe6uM2kJ308=
=fdKq
-END PGP SIGNATURE-
Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?
Normally the input files for Labelit must have sequential numbering
like lysozyme_001.cbf. The file name "DX-CORRECTIONS.cbf" causes the
reported error as it does not conform to this format.
Nick
On Fri, Jan 11, 2013 at 9:51 AM, Tim Gruene wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
>
> The formatting of icedove probably created confusion, but these error
> message come from running labelit.png WITH the file DX-CORRECTIONS.cbf
> as one and only command line option and no output is created. adxv has
> not problem dealing with XDS cbf-files.
>
> Tim
>
> On 01/11/2013 06:43 PM, Nat Echols wrote:
>> I think the help message refers to another program. Anyway, it's
>> an extremely simple script - having examined the code, the
>> command-line invocation is:
>>
>> labelit.png input_file [output_file]
>>
>> and that's it - no other options available. But Nick or I will fix
>> it so it prints something more useful if run without arguments.
>>
>> -Nat
>>
>> On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft
>> wrote:
>>> I got that error blurb too when I run without an image on the
>>> commandline. Not very elegant.
>>>
>>> Try: labelit.png --help
>>>
>>>
>>>
>>>
>>> On 11/01/2013 16:34, Tim Gruene wrote:
>> Hi Nat!
>>
>> How recent is recent? From today's 'phenix-online.org': "New Phenix
>> version 1.8.1 now available", but
>>
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$
>> labelit.png_1.8.1-1168 DX-CORRECTIONS.cbf Traceback (most recent
>> call last): File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>>
>>
> line 27, in
>> OV = overlay_plain(infile,graphics_bin) File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>>
>>
> line 6, in __init__
>> OverlayDriverClass.__init__(self,infile,graphics_bin) File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
>>
>>
> line 19, in __init__
>> self.I = GenericImageWorker(infile,binning=graphics_bin) File
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
>>
>>
> line 12, in __init__
>> images = ImageFiles(imagenames,labelit_commands) File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>>
>>
> line 184, in __init__
>> self.filenames = FileNames(arg_module,phil_params) File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>>
>>
> line 70, in __init__
>> self.interface3_parse_command() File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>>
>>
> line 138, in interface3_parse_command
>>
>> self.interface3_FN_factory(os.path.abspath(file),error_message="File
>>
>>
> name not accepted")
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>>
>>
> line 127, in interface3_FN_factory
>> raise Exception("Input error: "+error_message) Exception: Input
>> error: File name not accepted
>>
>> Compared to: tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv
>> -sa DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff Adxv Version 1.9.8
>> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems
>> Corporation Recognized CBF format data. Warning: Could not find
>> diffrn_frame_data or diffrn_data_frame
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
>> DX-CORRECTIONS.tiff DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0
>> 8-bit PseudoClass 256c 592KB 0.000u 0:00.000
>>
>> Cheers, Tim
>>
>> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>>
>> Brilliant - thanks Nat!! Easy to work around that
>> feature.
>>
>> And thanks Nick!!
>>
>>
>>
>>
>> Original Message Subject: Re:
>> [ccp4bb] Convert cbf to png/tiff? Date: Thu, 10 Jan
>> 2013 12:47:21 -0800 From: Nat Echols
>> To: Frank von Delft
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> Using any recent Phenix distribution:
>>
>> labelit.png file_name
>>
>> For reasons unknown to me, the output is named "plain.png"
>> - I will bug Nick about this.
>>
>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
>> wrote:
>>>
>>> Hello all - anybody know an easy way to convert CBF
>>> images (Pilatus) into something lossless like tiff or
>>> png?
>>>
>>> Ideally *easy* as in r e a l l y e a s y and not
>>> requiring extensive installation of dependencies and
>>> stuff. Because then I might as well write my own stuff
>>> using cbflib and PIL in python.
>>>
>>> Thanks! phx
>>
>>
>>
>>
>> -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr.
>> 4 D-37077 Goettingen
>>
>> GPG Key ID = A46BEE1A
>>
>>
>
> - --
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
> -BEGIN PGP SIGNATURE-
> Version: GnuPG v1.4.12 (GNU/
