Re: [ccp4bb] Requesting old data sets
Hi Jürgen, I'd be willing to share my datasets obtained since 1999, which I have online. Older ones are on tape and it would be a significant effort to retrieve them, if at all possible. best, Kay
Re: [ccp4bb] Requesting old data sets
Personally I'd be happy to share my old datasets if I could find them Phil On 3 Jul 2012, at 03:39, Bosch, Juergen wrote: Dear CCP4 community, what's the general opinion regarding sharing old published data sets ? Would you be offended if I asked you for your raw images from say a 5-10 year old structure ? And then the more tricky question, what if I find something you overlooked and I would perhaps be able to use that information ? Any suggestions and advice are welcome on or off board. Thanks, Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://lupo.jhsph.edu
Re: [ccp4bb] Requesting old data sets
Thank you all for your replies. It is very much in line with my own thoughts. @Phil, sorry you can't find your old data. I started my own repository for things I'm responsible for and once released by the PDB, people will have access to the raw images on our website. @all This kind of study is very nice: http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/1Y13 But that's not what I'm up to. It's more like there's actually some unmodelled density in your structure and what could it be. It might be irrelevant to the original depositor but it could turn out to be interesting in a different protein. And I don't care about the Rama outliers, I'll not hunt down those errors. But if somebody didn't care too much to model a missing loop that might be more interesting. @Nat, for a different propose, I might ask you for that missing kinase loop dataset (torture, ahem education of students) Thank you all, Jürgen On Jul 3, 2012, at 4:02 AM, Phil Evans wrote: Personally I'd be happy to share my old datasets if I could find them Phil On 3 Jul 2012, at 03:39, Bosch, Juergen wrote: Dear CCP4 community, what's the general opinion regarding sharing old published data sets ? Would you be offended if I asked you for your raw images from say a 5-10 year old structure ? And then the more tricky question, what if I find something you overlooked and I would perhaps be able to use that information ? Any suggestions and advice are welcome on or off board. Thanks, Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://lupo.jhsph.edu .. Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-2926 http://lupo.jhsph.edu
Re: [ccp4bb] Requesting old data sets
Bosch, Juergen wrote: Dear CCP4 community, what's the general opinion regarding sharing old published data sets ? Would you be offended if I asked you for your raw images from say a 5-10 year old structure ? And then the more tricky question, what if I find something you overlooked and I would perhaps be able to use that information ? (my 2 cents worth) Sounds like grounds for co-authorship - doesn't need to be an embarrassment for the original authors - further refinement of structure 1xyz revealed important details regarding the . . . It's not unusual for the original authors to discover mistakes after a structure is published, obsolete the original structure and maybe even get another publication. (of course you would have to deposit the data this time) Any suggestions and advice are welcome on or off board. Thanks, Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://lupo.jhsph.edu
Re: [ccp4bb] Requesting old data sets
Dear Juergen, That's a practically important approach to recheck the details of structures. I refined from the structure factor files of two published structures related to my subject and already found some key information that was missing in the published ones. So it would be more confident if original images could be retrieved. I would offer upon request. Thank you for posting the topic! Wenhua Zhang --- Mail sent from my iPhone --- On 3 juil. 2012, at 04:39, Bosch, Juergen jubo...@jhsph.edu wrote: Dear CCP4 community, what's the general opinion regarding sharing old published data sets ? Would you be offended if I asked you for your raw images from say a 5-10 year old structure ? And then the more tricky question, what if I find something you overlooked and I would perhaps be able to use that information ? Any suggestions and advice are welcome on or off board. Thanks, Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://lupo.jhsph.edu
