Re: [ccp4bb] how to install coot on ubuntu 11.10

[Tim Gruene]

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Hash: SHA1

Dear Michael,

the command 'aptitude search coot' could give you an answer, although
I am not sure 'aptitude' is available on Ubuntu (it is in Debian).

Tim

On 04/25/12 17:54, Michael Murphy wrote:
> I am trying to install Coot on a laptop that runs Ubuntu. Following
> the instructions on the CCp4wiki 
> http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Packages_for_Ubuntu
>
> 
> 
> sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys
> 1DC81A57 sudo add-apt-repository ppa:mok0/ppa apt-get update &&
> apt-get install coot <- I had to add "sudo" to the beginning of
> this command and after the &&
> 
> and I received this fail message
> 
> "Package coot is not available, but is referred to by another
> package. This may mean that the package is missing, has been
> obsoleted, or is only available from another source
> 
> E: Package 'coot' has no installation candidate"
> 
> 
> is there some other name/link for the package other than the word
> "coot" or do I need to install it by some other method other than
> what I have been doing?
> 

- -- 
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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Re: [ccp4bb] how to install coot on ubuntu 11.10

[AFL]

Hi Michael,

 If I interpret the content of Morten Kjeldgaard ppa repository 
correctly the latest coot available there is for Natty Narwhal (11.04). 
Hence, installation in 11.10 or later will just not work.


Cheers, Andrzej

On 4/25/12 5:54 PM, Michael Murphy wrote:

I am trying to install Coot on a laptop that runs Ubuntu. Following the
instructions on the CCp4wiki
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Packages_for_Ubuntu

  sudo apt-key adv --keyserverkeyserver.ubuntu.com  
  --recv-keys 1DC81A57
  sudo add-apt-repository ppa:mok0/ppa
apt-get update&&  apt-get install coot<- I had to add"sudo"  to the beginning of this 
command and after the&&


and I received this fail message

"Package coot is not available, but is referred to by another package.
This may mean that the package is missing, has been obsoleted, or
is only available from another source

E: Package 'coot' has no installation candidate"


is there some other name/link for the package other than the word "coot"
or do I need to install it by some other method other than what I have
been doing?




--

Re: [ccp4bb] how to install coot on ubuntu 11.10

[Miguel Ortiz Lombardia]

El 25/04/12 17:54, Michael Murphy escribió:
> I am trying to install Coot on a laptop that runs Ubuntu. Following the
> instructions on the CCp4wiki
> http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Packages_for_Ubuntu
>  
> 
>  sudo apt-key adv --keyserver keyserver.ubuntu.com 
>  --recv-keys 1DC81A57
>  sudo add-apt-repository ppa:mok0/ppa
> apt-get update && apt-get install coot <- I had to add "sudo" to the 
> beginning of this command and after the &&
> 
> 
> and I received this fail message
> 
> "Package coot is not available, but is referred to by another package.
> This may mean that the package is missing, has been obsoleted, or
> is only available from another source
> 
> E: Package 'coot' has no installation candidate"
> 
> 
> is there some other name/link for the package other than the word "coot"
> or do I need to install it by some other method other than what I have
> been doing?
> 
> 

Hi Michael,

Just this weekend I installed coot on a similar computer. It's an Ubuntu
11.10 (oneiric ocelot) at 64bit. I had no much problem installing it
using Paul's autobuild script
(http://www.biop.ox.ac.uk/coot/software/build-script/build-install-coot-from-scratch)
after a couple of tweaks of that script and of the one that this script
downloads (so you may download both manually, apply de patches and
comment the if/fi lines in the first script). The tweaks are included as
diff files in the attached file.

The only other thing I had to do was to install guile-1.8 and
guile-1.8-dev from the Ubuntu repositories. Anything else compiled just
fine with Paul's script.

Good luck,


-- 
Miguel

Architecture et Fonction des Macromolécules Biologiques (UMR6098)
CNRS, Universités d'Aix-Marseille I & II
Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
Tel: +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
mailto:miguel.ortiz-lombar...@afmb.univ-mrs.fr
http://w2.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia


cootbuilddiffs.tgz
Description: application/compressed-tar