commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2024-07-17 15:14:20
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.17339 (New)
Package is "python-scipy"
Wed Jul 17 15:14:20 2024 rev:75 rq:1187907 version:1.14.0
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2024-07-03 20:29:46.891925885 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.17339/python-scipy.changes
2024-07-17 15:14:54.773544359 +0200
@@ -1,0 +2,5 @@
+Thu Jul 11 17:55:47 UTC 2024 - Ben Greiner
+
+- Fix hpc build: Provide f2py with correct shebang for build-time
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.3tk6to/_old 2024-07-17 15:14:55.725579223 +0200
+++ /var/tmp/diff_new_pack.3tk6to/_new 2024-07-17 15:14:55.729579369 +0200
@@ -189,11 +189,16 @@
%endif
# makes sure that the cython and pythran commands from the correct flavor are
in PATH
%python_flavored_alternatives
+origpath="$PATH"
%{python_expand #
%if %{with hpc}
+export PATH=$origpath
+mkdir build/hpcflavorbin
py_ver=%{$python_version}
%hpc_setup
module load $python-numpy
+ln -s %{_bindir}/f2py-%{$python_bin_suffix} build/hpcflavorbin/f2py
+export PATH="$PWD/build/hpcflavorbin/:$PATH"
%endif
export CFLAGS="%{optflags} -fno-strict-aliasing"
%{$python_pyproject_wheel}
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-scipy for openSUSE:Factory checked in at 2024-07-03 20:29:17 Comparing /work/SRC/openSUSE:Factory/python-scipy (Old) and /work/SRC/openSUSE:Factory/.python-scipy.new.18349 (New) Package is "python-scipy" Wed Jul 3 20:29:17 2024 rev:74 rq:1184871 version:1.14.0 Changes: --- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes 2024-05-29 19:35:37.523996432 +0200 +++ /work/SRC/openSUSE:Factory/.python-scipy.new.18349/python-scipy.changes 2024-07-03 20:29:46.891925885 +0200 @@ -1,0 +2,208 @@ +Mon Jul 1 13:35:29 UTC 2024 - John Paul Adrian Glaubitz + +- Update to 1.14.0 + ## Highlights of this release + * SciPy now supports the new Accelerate library introduced in macOS 13.3, and +has wheels built against Accelerate for macOS >=14 resulting in significant +performance improvements for many linear algebra operations. + * A new method, ``cobyqa``, has been added to `scipy.optimize.minimize` - this +is an interface for COBYQA (Constrained Optimization BY Quadratic +Approximations), a derivative-free optimization solver, designed to +supersede COBYLA, developed by the Department of Applied Mathematics, The +Hong Kong Polytechnic University. + * `scipy.sparse.linalg.spsolve_triangular` is now more than an order of +magnitude faster in many cases. + ## New features + # `scipy.fft` improvements + * A new function, `scipy.fft.prev_fast_len`, has been added. This function +finds the largest composite of FFT radices that is less than the target +length. It is useful for discarding a minimal number of samples before FFT. + #`scipy.io` improvements + * ``wavfile`` now supports reading and writing of ``wav`` files in the RF64 +format, allowing files greater than 4 GB in size to be handled. + #`scipy.constants` improvements + * Experimental support for the array API standard has been added. + #`scipy.interpolate` improvements + * `scipy.interpolate.Akima1DInterpolator` now supports extrapolation via the +``extrapolate`` argument. + #`scipy.optimize` improvements + * `scipy.optimize.HessianUpdateStrategy` now also accepts square arrays for +``init_scale``. + * A new method, ``cobyqa``, has been added to `scipy.optimize.minimize` - this +is an interface for COBYQA (Constrained Optimization BY Quadratic +Approximations), a derivative-free optimization solver, designed to +supersede COBYLA, developed by the Department of Applied Mathematics, The +Hong Kong Polytechnic University. + * There are some performance improvements in +`scipy.optimize.differential_evolution`. + * `scipy.optimize.approx_fprime` now has linear space complexity. + #`scipy.signal` improvements + * `scipy.signal.minimum_phase` has a new argument ``half``, allowing the +provision of a filter of the same length as the linear-phase FIR filter +coefficients and with the same magnitude spectrum. + #`scipy.sparse` improvements + * Sparse arrays now support 1D shapes in COO, DOK and CSR formats. +These are all the formats we currently intend to support 1D shapes. +Other sparse array formats raise an exception for 1D input. + * Sparse array methods min/nanmin/argmin and max analogs now return 1D arrays. +Results are still COO format sparse arrays for min/nanmin and +dense ``np.ndarray`` for argmin. + * Sparse matrix and array objects improve their ``repr`` and ``str`` output. + * A special case has been added to handle multiplying a ``dia_array`` by a +scalar, which avoids a potentially costly conversion to CSR format. + * `scipy.sparse.csgraph.yen` has been added, allowing usage of Yen's K-Shortest +Paths algorithm on a directed on undirected graph. + * Addition between DIA-format sparse arrays and matrices is now faster. + * `scipy.sparse.linalg.spsolve_triangular` is now more than an order of +magnitude faster in many cases. + #`scipy.spatial` improvements + * ``Rotation`` supports an alternative "scalar-first" convention of quaternion +component ordering. It is available via the keyword argument ``scalar_first`` +of ``from_quat`` and ``as_quat`` methods. + * Some minor performance improvements for inverting of ``Rotation`` objects. + #`scipy.special` improvements + * Added `scipy.special.log_wright_bessel`, for calculation of the logarithm of +Wright's Bessel function. + * The relative error in `scipy.special.hyp2f1` calculations has improved +substantially. + * Improved behavior of ``boxcox``, ``inv_boxcox``, ``boxcox1p``, and +``inv_boxcox1p`` by preventing premature overflow. + #`scipy.stats` improvements + * A new function `scipy.stats.power` can be used for simulating the power +of a hypothesis
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-scipy for openSUSE:Factory checked in at 2024-04-30 17:25:49 Comparing /work/SRC/openSUSE:Factory/python-scipy (Old) and /work/SRC/openSUSE:Factory/.python-scipy.new.1880 (New) Package is "python-scipy" Tue Apr 30 17:25:49 2024 rev:70 rq:1170765 version:1.13.0 Changes: --- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes 2024-03-01 23:34:20.886730700 +0100 +++ /work/SRC/openSUSE:Factory/.python-scipy.new.1880/python-scipy.changes 2024-04-30 17:26:07.991494898 +0200 @@ -1,0 +2,138 @@ +Wed Apr 24 11:41:51 UTC 2024 - Ben Greiner + +- Skip another test out of numeric precision for 32-bit +- Fix HPC _version + +--- +Fri Apr 19 10:55:20 UTC 2024 - Ben Greiner + +- Update to 1.13.0 + ## Highlights of this release + * Support for NumPy 2.0.0. + * Interactive examples have been added to the documentation, +allowing users to run the examples locally on embedded +Jupyterlite notebooks in their browser. + * Preliminary 1D array support for the COO and DOK sparse +formats. + * Several scipy.stats functions have gained support for +additional axis, nan_policy, and keepdims arguments. +scipy.stats also has several performance and accuracy +improvements. + ## New features + * scipy.integrate improvements + * scipy.io improvements + * scipy.interpolate improvements + * scipy.signal improvements + * scipy.sparse improvements + * scipy.spatial improvements + * scipy.special improvements + * scipy.stats improvements + ## Deprecated features + * Complex dtypes in PchipInterpolator and Akima1DInterpolator +have been deprecated and will raise an error in SciPy 1.15.0. +If you are trying to use the real components of the passed +array, use np.real on y. + ## Other changes + * The second argument of scipy.stats.moment has been renamed to +order while maintaining backward compatibility. +- Release 1.12.0 + ## Highlights of this release + * Experimental support for the array API standard has been added +to part of scipy.special, and to all of scipy.fft and +scipy.cluster. There are likely to be bugs and early feedback +for usage with CuPy arrays, PyTorch tensors, and other array +API compatible libraries is appreciated. Use the +SCIPY_ARRAY_API environment variable for testing. + * A new class, ShortTimeFFT, provides a more versatile +implementation of the short-time Fourier transform (STFT), its +inverse (ISTFT) as well as the (cross-) spectrogram. It +utilizes an improved algorithm for calculating the ISTFT. + * Several new constructors have been added for sparse arrays, and +many operations now additionally support sparse arrays, further +facilitating the migration from sparse matrices. + * A large portion of the scipy.stats API now has improved support +for handling NaN values, masked arrays, and more fine-grained +shape-handling. The accuracy and performance of a number of +stats methods have been improved, and a number of new +statistical tests and distributions have been added. + ## New features + * scipy.cluster improvements + * scipy.fft improvements + * scipy.integrate improvements + * scipy.interpolate improvements + * scipy.linalg improvements + * scipy.ndimage improvements + * scipy.optimize improvements + * scipy.signal improvements + * scipy.sparse improvements + * scipy.spatial improvements + * scipy.special improvements + * scipy.stats improvements + ## Deprecated features + * Error messages have been made clearer for objects that donât +exist in the public namespace and warnings sharpened for +private attributes that are not supposed to be imported at all. + * scipy.signal.cmplx_sort has been deprecated and will be removed +in SciPy 1.15. A replacement you can use is provided in the +deprecation message. + * Values the argument initial of +scipy.integrate.cumulative_trapezoid other than 0 and None are +now deprecated. + * scipy.stats.rvs_ratio_uniforms is deprecated in favour of +scipy.stats.sampling.RatioUniforms + * scipy.integrate.quadrature and scipy.integrate.romberg have +been deprecated due to accuracy issues and interface +shortcomings. They will be removed in SciPy 1.15. Please use +scipy.integrate.quad instead. + * Coinciding with upcoming changes to function signatures (e.g. +removal of a deprecated keyword), we are deprecating positional +use of keyword arguments for the affected functions, which will +raise an error starting with SciPy 1.14. In some cases, this +has delayed the originally announced removal date, to give time +to respond to the
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2023-10-11 23:53:38
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1807 (New)
Package is "python-scipy"
Wed Oct 11 23:53:38 2023 rev:66 rq:1116438 version:1.11.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2023-08-06 16:29:20.283611737 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1807/python-scipy.changes
2023-10-12 11:55:44.294551743 +0200
@@ -1,0 +2,5 @@
+Mon Oct 9 06:52:54 UTC 2023 - ecsos
+
+- Let it build for Leap 15.6 also.
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.yIe8bJ/_old 2023-10-12 11:55:45.054579134 +0200
+++ /var/tmp/diff_new_pack.yIe8bJ/_new 2023-10-12 11:55:45.054579134 +0200
@@ -126,7 +126,7 @@
%endif
%if %{without hpc}
BuildRequires: %{python_module numpy-devel >= 1.18.5}
-%if 0%{?sle_version} && 0%{?sle_version} <= 150500
+%if 0%{?sle_version} && 0%{?sle_version} <= 150600
# The default gcc on SLE15 is gcc7 we need something newer
BuildRequires: gcc10-c++
BuildRequires: gcc10-fortran
@@ -182,7 +182,7 @@
%if !%{with test}
%build
-%if 0%{?sle_version} && 0%{?sle_version} <= 150500
+%if 0%{?sle_version} && 0%{?sle_version} <= 150600
# We need gcc >= 8 for SLE15
export CC=gcc-10
export CXX=g++-10
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2023-08-06 16:29:16
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.22712 (New)
Package is "python-scipy"
Sun Aug 6 16:29:16 2023 rev:65 rq:1101324 version:1.11.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2023-07-05 15:30:34.850573704 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.22712/python-scipy.changes
2023-08-06 16:29:20.283611737 +0200
@@ -1,0 +2,20 @@
+Thu Jul 27 13:31:24 UTC 2023 - Markéta Machová
+
+- Add upstream intc.patch to fix gh#scipy/scipy#18603
+
+---
+Tue Jul 25 10:04:04 UTC 2023 - Markéta Machová
+
+- Update to 1.11.1
+ * Several scipy.sparse array API improvements, including sparse.sparray,
+a new public base class distinct from the older sparse.spmatrix class,
+proper 64-bit index support, and numerous deprecations paving the way
+to a modern sparse array experience.
+ * scipy.stats added tools for survival analysis, multiple hypothesis
+testing, sensitivity analysis, and working with censored data.
+ * A new function was added for quasi-Monte Carlo integration, and linear
+algebra functions det and lu now accept nD-arrays.
+ * An axes argument was added broadly to ndimage functions, facilitating
+analysis of stacked image data.
+
+---
Old:
scipy-1.10.1.tar.gz
New:
intc.patch
scipy-1.11.1.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.07KTdX/_old 2023-08-06 16:29:22.127623548 +0200
+++ /var/tmp/diff_new_pack.07KTdX/_new 2023-08-06 16:29:22.135623599 +0200
@@ -18,7 +18,7 @@
%{?sle15_python_module_pythons}
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_10_1
+%define _ver 1_11_1
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -93,7 +93,7 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version:1.10.1
+Version:1.11.1
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
@@ -102,6 +102,8 @@
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
# Create with pooch: `python3 scipy-%{version}/scipy/datasets/_download_all.py
scipy-datasets/scipy-data; tar czf scipy-datasets.tar.gz scipy-datasets`
Source1:scipy-datasets.tar.gz
+#PATCH-FIX-UPSTREAM
https://github.com/scipy/scipy/commit/8501b7c2fb8a7121aeef94489ece988043c463d0
BUG: sparse.linalg: Cast index arrays to intc before calling SuperLU functions
+Patch: intc.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
@@ -262,6 +264,7 @@
donttest+=" or (test_rotation and test_align_vectors_single_vector)"
donttest+=" or (test_lobpcg and test_tolerance_float32)"
donttest+=" or (test_iterative and test_maxiter_worsening)"
+donttest+=" or (test_resampling and test_bootstrap_alternative)"
%ifarch %ix86
donttest+=" or (test_solvers and test_solve_generalized_discrete_are)"
# Skip the following tests that fail with GCC 13 due to the excess precision
change:
++ intc.patch ++
>From 8501b7c2fb8a7121aeef94489ece988043c463d0 Mon Sep 17 00:00:00 2001
From: CJ Carey
Date: Sun, 2 Jul 2023 16:29:22 -0400
Subject: [PATCH] BUG: sparse.linalg: Cast index arrays to intc before calling
SuperLU functions (#18644)
* BUG: sparse.linalg: Cast to intc before SuperLU
-
Co-authored-by: Stefan van der Walt
Co-authored-by: Dan Schult
---
scipy/sparse/linalg/_dsolve/linsolve.py | 27 +++--
.../linalg/_dsolve/tests/test_linsolve.py | 38 ++-
2 files changed, 44 insertions(+), 21 deletions(-)
diff --git a/scipy/sparse/linalg/_dsolve/linsolve.py
b/scipy/sparse/linalg/_dsolve/linsolve.py
index 0c408f737266..78ba447bcd44 100644
--- a/scipy/sparse/linalg/_dsolve/linsolve.py
+++ b/scipy/sparse/linalg/_dsolve/linsolve.py
@@ -123,6 +123,21 @@ def _get_umf_family(A):
return family, A_new
+def _safe_downcast_indices(A):
+# check for safe downcasting
+max_value = np.iinfo(np.intc).max
+
+if A.indptr[-1] > max_value: # indptr[-1] is max b/c indptr always sorted
+raise ValueError("indptr values too large for SuperLU")
+
+if max(*A.shape) > max_value: # only
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2023-07-05 15:30:32
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.23466 (New)
Package is "python-scipy"
Wed Jul 5 15:30:32 2023 rev:64 rq:1096504 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2023-03-11 18:24:35.139051224 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.23466/python-scipy.changes
2023-07-05 15:30:34.850573704 +0200
@@ -1,0 +2,6 @@
+Thu Jun 29 07:21:08 UTC 2023 - Andreas Schneider
+
+- Use sle15_python_module_pythons
+- Require GCC >= 8
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.CcETdq/_old 2023-07-05 15:30:35.966580326 +0200
+++ /var/tmp/diff_new_pack.CcETdq/_new 2023-07-05 15:30:35.974580373 +0200
@@ -16,6 +16,7 @@
#
+%{?sle15_python_module_pythons}
%global flavor @BUILD_FLAVOR@%{nil}
%define _ver 1_10_1
%define shortname scipy
@@ -123,8 +124,14 @@
%endif
%if %{without hpc}
BuildRequires: %{python_module numpy-devel >= 1.18.5}
-BuildRequires: gcc-c++
-BuildRequires: gcc-fortran
+%if 0%{?sle_version} && 0%{?sle_version} <= 150500
+# The default gcc on SLE15 is gcc7 we need something newer
+BuildRequires: gcc10-c++
+BuildRequires: gcc10-fortran
+%else
+BuildRequires: gcc-c++ >= 8
+BuildRequires: gcc-fortran >= 8
+%endif
Requires: python-numpy >= 1.18.5
Requires: python-pybind11 >= 2.4.3
Suggests: python-pooch
@@ -173,6 +180,12 @@
%if !%{with test}
%build
+%if 0%{?sle_version} && 0%{?sle_version} <= 150500
+# We need gcc >= 8 for SLE15
+export CC=gcc-10
+export CXX=g++-10
+export FC=gfortran-10
+%endif
# makes sure that the cython and pythran commands from the correct flavor are
in PATH
%python_flavored_alternatives
%{python_expand #
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-scipy for openSUSE:Factory checked in at 2023-03-11 18:23:47 Comparing /work/SRC/openSUSE:Factory/python-scipy (Old) and /work/SRC/openSUSE:Factory/.python-scipy.new.31432 (New) Package is "python-scipy" Sat Mar 11 18:23:47 2023 rev:63 rq:1070755 version:1.10.1 Changes: --- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes 2023-02-27 12:54:56.351264503 +0100 +++ /work/SRC/openSUSE:Factory/.python-scipy.new.31432/python-scipy.changes 2023-03-11 18:24:35.139051224 +0100 @@ -1,0 +2,6 @@ +Fri Mar 10 14:18:09 UTC 2023 - Martin Liška + +- Fix i686 tests for GCC 13 due to: + https://gcc.gnu.org/gcc-13/porting_to.html#excess-precision + +--- Other differences: -- ++ python-scipy.spec ++ --- /var/tmp/diff_new_pack.88JGXW/_old 2023-03-11 18:24:35.779054560 +0100 +++ /var/tmp/diff_new_pack.88JGXW/_new 2023-03-11 18:24:35.783054580 +0100 @@ -251,6 +251,9 @@ donttest+=" or (test_iterative and test_maxiter_worsening)" %ifarch %ix86 donttest+=" or (test_solvers and test_solve_generalized_discrete_are)" +# Skip the following tests that fail with GCC 13 due to the excess precision change: +# https://gcc.gnu.org/gcc-13/porting_to.html#excess-precision +donttest+=" or (test_fitpack or test_fitpack2 or test_splint or test_integrate or test_boost)" %endif # fails on big endian donttest+=" or (TestNoData and test_nodata)"
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2023-02-27 12:54:54
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.31432 (New)
Package is "python-scipy"
Mon Feb 27 12:54:54 2023 rev:62 rq:1067788 version:1.10.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2023-01-28 20:07:52.461947736 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.31432/python-scipy.changes
2023-02-27 12:54:56.351264503 +0100
@@ -1,0 +2,7 @@
+Sun Feb 26 00:27:35 UTC 2023 - Ben Greiner
+
+- Update to 1.10.1
+ * bug-fix release with no new features compared to 1.10.0
+- Drop scipy-pr17717-ro-interpn.patch
+
+---
Old:
scipy-1.10.0.tar.gz
scipy-pr17717-ro-interpn.patch
New:
scipy-1.10.1.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.F6LGfA/_old 2023-02-27 12:54:57.671272600 +0100
+++ /var/tmp/diff_new_pack.F6LGfA/_new 2023-02-27 12:54:57.679272649 +0100
@@ -17,7 +17,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_10_0
+%define _ver 1_10_1
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -92,7 +92,7 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version:1.10.0
+Version:1.10.1
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
@@ -101,8 +101,6 @@
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
# Create with pooch: `python3 scipy-%{version}/scipy/datasets/_download_all.py
scipy-datasets/scipy-data; tar czf scipy-datasets.tar.gz scipy-datasets`
Source1:scipy-datasets.tar.gz
-# PATCH-FIX-UPSTREAM scipy-pr17717-ro-interpn.patch gh#scipy/scipy#17717
-Patch0:
https://github.com/scipy/scipy/pull/17717.patch#/scipy-pr17717-ro-interpn.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
++ scipy-1.10.0.tar.gz -> scipy-1.10.1.tar.gz ++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.10.0.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.31432/scipy-1.10.1.tar.gz differ:
char 5, line 1
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2023-01-28 19:59:45
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.32243 (New)
Package is "python-scipy"
Sat Jan 28 19:59:45 2023 rev:61 rq:1059146 version:1.10.0
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-12-25 15:14:43.197327919 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.32243/python-scipy.changes
2023-01-28 20:07:52.461947736 +0100
@@ -1,0 +2,30 @@
+Mon Jan 16 22:06:27 UTC 2023 - Ben Greiner
+
+- Highlights of the 1.10.0 release
+ * A new dedicated datasets submodule (scipy.datasets) has been
+added, and is now preferred over usage of scipy.misc for
+dataset retrieval.
+ * A new scipy.interpolate.make_smoothing_spline function was
+added. This function constructs a smoothing cubic spline from
+noisy data, using the generalized cross-validation (GCV)
+criterion to find the tradeoff between smoothness and proximity
+to data points.
+ * scipy.stats has three new distributions, two new hypothesis
+tests, three new sample statistics, a class for greater control
+over calculations involving covariance matrices, and many other
+enhancements.
+- Add scipy-pr17717-ro-interpn.patch gh#scipy/scipy#17717
+ * Fixes gh#spacetelescope/gwcs#433
+- Provide scipy-datasets.tar.gz for pooch cache and tests without
+ needing to download during test time.
+
+---
+Wed Jan 11 07:35:47 UTC 2023 - Guillaume GARDET
+
+- Update to version 1.10.0
+- Drop upstream pacthes:
+ * fix-tests.patch
+ * fix-tests-pytest72.patch
+ * scipy-pr17467-no-np.int0.patch
+
+---
Old:
fix-tests-pytest72.patch
fix-tests.patch
scipy-1.9.3.tar.gz
scipy-pr17467-no-np.int0.patch
New:
scipy-1.10.0.tar.gz
scipy-datasets.tar.gz
scipy-pr17717-ro-interpn.patch
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.4CVZqH/_old 2023-01-28 20:07:53.87790 +0100
+++ /var/tmp/diff_new_pack.4CVZqH/_new 2023-01-28 20:07:53.881955572 +0100
@@ -1,7 +1,7 @@
#
# spec file
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -17,7 +17,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_9_3
+%define _ver 1_10_0
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -92,19 +92,17 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version:1.9.3
+Version:1.10.0
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
Group: Development/Libraries/Python
URL:https://www.scipy.org
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
-# PATCH-FIX-UPSTREAM gh#scipy/scipy#16926#issuecomment-1287507634
-Patch1: fix-tests.patch
-# PATCH-FIX-UPSTREAM fix-tests-pytest72.patch gh#scipy/scipy#17296
-Patch2: fix-tests-pytest72.patch
-# PATCH-FIX-UPSTREAM scipy-pr17467-no-np.int0.patch gh#scipy/scipy#17467
-Patch3: scipy-pr17467-no-np.int0.patch
+# Create with pooch: `python3 scipy-%{version}/scipy/datasets/_download_all.py
scipy-datasets/scipy-data; tar czf scipy-datasets.tar.gz scipy-datasets`
+Source1:scipy-datasets.tar.gz
+# PATCH-FIX-UPSTREAM scipy-pr17717-ro-interpn.patch gh#scipy/scipy#17717
+Patch0:
https://github.com/scipy/scipy/pull/17717.patch#/scipy-pr17717-ro-interpn.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
@@ -118,6 +116,7 @@
BuildRequires: pkg-config
BuildRequires: python-rpm-macros >= 20220911
%if %{with test}
+BuildRequires: %{python_module pooch}
BuildRequires: %{python_module pytest-timeout}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module pytest}
@@ -130,6 +129,7 @@
BuildRequires: gcc-fortran
Requires: python-numpy >= 1.18.5
Requires: python-pybind11 >= 2.4.3
+Suggests: python-pooch
%if %{with openblas}
BuildRequires: openblas-devel
%else
@@ -157,8 +157,9 @@
%{?with_hpc:%{hpc_python_master_package -L -a }}
%prep
-%autosetup -p1 -n scipy-%{version}
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-12-25 15:14:31
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1563 (New)
Package is "python-scipy"
Sun Dec 25 15:14:31 2022 rev:60 rq:1045131 version:1.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-12-10 21:18:02.369630568 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1563/python-scipy.changes
2022-12-25 15:14:43.197327919 +0100
@@ -1,0 +2,7 @@
+Fri Dec 23 16:37:30 UTC 2022 - Ben Greiner
+
+- Add scipy-pr17467-no-np.int0.patch gh#scipy/scipy#17467
+- Move the flavored packaganame definition so that quilt does not
+ fail
+
+---
New:
scipy-pr17467-no-np.int0.patch
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.sYDfqi/_old 2022-12-25 15:14:44.11103 +0100
+++ /var/tmp/diff_new_pack.sYDfqi/_new 2022-12-25 15:14:44.117333126 +0100
@@ -42,7 +42,9 @@
%if "%{flavor}" == "test"
%bcond_with hpc
%bcond_without test
+%define package_name %{pname}-test
%else
+%define package_name %{pname}
%bcond_with test
%endif
@@ -60,11 +62,6 @@
%{?with_hpc:%{hpc_requires}}
%bcond_with ringdisabled
%if %{without hpc}
-%if "%{flavor}" == ""
-%define package_name %{pname}
-%else
-%define package_name %{pname}-%{flavor}
-%endif
# for file section
%define p_python_sitearch %{python_sitearch}
# for inside python_expand
@@ -106,6 +103,8 @@
Patch1: fix-tests.patch
# PATCH-FIX-UPSTREAM fix-tests-pytest72.patch gh#scipy/scipy#17296
Patch2: fix-tests-pytest72.patch
+# PATCH-FIX-UPSTREAM scipy-pr17467-no-np.int0.patch gh#scipy/scipy#17467
+Patch3: scipy-pr17467-no-np.int0.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
@@ -269,6 +268,11 @@
donttest+=" or (test_distributions and TestLevyStable and nolan_samples and
pct_range0-alpha_range0-beta_range0)"
donttest+=" or (test_distributions and TestLevyStable and test_location_scale
and pdf)"
donttest+=" or (test_data and test_boost and (betainc or btdtr))"
+donttest+=" or (test_mstats_basic and test_skewtest_2D_WithMask)"
+%endif
+%ifarch %ix86
+# illegal instruction (?)
+donttest+=" or (test_fftlog and test_fht_identity)"
%endif
%ifarch %arm
donttest+=" or (test_cython_api and eval_sh_chebyt)"
++ scipy-pr17467-no-np.int0.patch ++
>From da3ff893b9ac161938e11f9bcd5380e09cf03150 Mon Sep 17 00:00:00 2001
From: warren
Date: Wed, 23 Nov 2022 16:27:51 -0500
Subject: [PATCH] BUG: ndimage: Don't use np.int0 (it is the same as np.intp)
---
scipy/ndimage/_measurements.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
Index: scipy-1.9.3/scipy/ndimage/_measurements.py
===
--- scipy-1.9.3.orig/scipy/ndimage/_measurements.py
+++ scipy-1.9.3/scipy/ndimage/_measurements.py
@@ -1524,8 +1524,7 @@ def watershed_ift(input, markers, struct
if input.shape != markers.shape:
raise RuntimeError('input and markers must have equal shape')
-integral_types = [numpy.int0,
- numpy.int8,
+integral_types = [numpy.int8,
numpy.int16,
numpy.int32,
numpy.int_,
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-12-10 21:17:44
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1835 (New)
Package is "python-scipy"
Sat Dec 10 21:17:44 2022 rev:59 rq:1041891 version:1.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-12-08 16:50:18.551213987 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1835/python-scipy.changes
2022-12-10 21:18:02.369630568 +0100
@@ -1,0 +2,9 @@
+Thu Dec 8 17:07:18 UTC 2022 - Dominique Leuenberger
+
+- Ensure the test flavor has a different source name than the main
+ flavor: OBS uses the source names to create the dep-chain. With
+ the test package having the same name as the mani flavor, all
+ builds behind python-scipy are blocked until the test suite
+ passed.
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.7dLRi6/_old 2022-12-10 21:18:03.641638006 +0100
+++ /var/tmp/diff_new_pack.7dLRi6/_new 2022-12-10 21:18:03.645638029 +0100
@@ -60,7 +60,11 @@
%{?with_hpc:%{hpc_requires}}
%bcond_with ringdisabled
%if %{without hpc}
+%if "%{flavor}" == ""
%define package_name %{pname}
+%else
+%define package_name %{pname}-%{flavor}
+%endif
# for file section
%define p_python_sitearch %{python_sitearch}
# for inside python_expand
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-12-08 16:50:15
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1835 (New)
Package is "python-scipy"
Thu Dec 8 16:50:15 2022 rev:58 rq:1040954 version:1.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-12-03 10:03:33.547214490 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1835/python-scipy.changes
2022-12-08 16:50:18.551213987 +0100
@@ -1,0 +2,6 @@
+Wed Dec 7 11:11:11 UTC 2022 - Daniel Garcia
+
+- Add fix-tests-pytest72.patch to fix the tests that fails with pytest 7
+ gh#scipy/scipy#17296
+
+---
New:
fix-tests-pytest72.patch
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.yTYXwc/_old 2022-12-08 16:50:19.311217875 +0100
+++ /var/tmp/diff_new_pack.yTYXwc/_new 2022-12-08 16:50:19.315217896 +0100
@@ -100,6 +100,8 @@
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
# PATCH-FIX-UPSTREAM gh#scipy/scipy#16926#issuecomment-1287507634
Patch1: fix-tests.patch
+# PATCH-FIX-UPSTREAM fix-tests-pytest72.patch gh#scipy/scipy#17296
+Patch2: fix-tests-pytest72.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
++ fix-tests-pytest72.patch ++
diff --git a/scipy/_lib/tests/test_bunch.py b/scipy/_lib/tests/test_bunch.py
index 6525568b099..1af6f2d5fab 100644
--- a/scipy/_lib/tests/test_bunch.py
+++ b/scipy/_lib/tests/test_bunch.py
@@ -16,7 +16,7 @@ class TestMakeTupleBunch:
# Tests with Result
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-def setup(self):
+def setup_method(self):
# Set up an instance of Result.
self.result = Result(x=1, y=2, z=3, w=99, beta=0.5)
diff --git a/scipy/optimize/tests/test_minpack.py
b/scipy/optimize/tests/test_minpack.py
index c88095351c6..64aafbb63b9 100644
--- a/scipy/optimize/tests/test_minpack.py
+++ b/scipy/optimize/tests/test_minpack.py
@@ -203,10 +203,12 @@ def deriv_func(*args):
assert_array_almost_equal(final_flows, np.ones(4))
def test_concurrent_no_gradient(self):
-return sequence_parallel([self.test_pressure_network_no_gradient] * 10)
+v = sequence_parallel([self.test_pressure_network_no_gradient] * 10)
+assert all([result is None for result in v])
def test_concurrent_with_gradient(self):
-return sequence_parallel([self.test_pressure_network_with_gradient] *
10)
+v = sequence_parallel([self.test_pressure_network_with_gradient] * 10)
+assert all([result is None for result in v])
class TestRootHybr:
@@ -386,10 +388,12 @@ def deriv_func(*args):
assert_array_almost_equal(params_fit, self.abc, decimal=2)
def test_concurrent_no_gradient(self):
-return sequence_parallel([self.test_basic] * 10)
+v = sequence_parallel([self.test_basic] * 10)
+assert all([result is None for result in v])
def test_concurrent_with_gradient(self):
-return sequence_parallel([self.test_basic_with_gradient] * 10)
+v = sequence_parallel([self.test_basic_with_gradient] * 10)
+assert all([result is None for result in v])
def test_func_input_output_length_check(self):
diff --git a/scipy/stats/tests/test_hypotests.py
b/scipy/stats/tests/test_hypotests.py
index 129b3fffc67..e5780df6572 100644
--- a/scipy/stats/tests/test_hypotests.py
+++ b/scipy/stats/tests/test_hypotests.py
@@ -169,7 +169,7 @@ def test_callable_cdf(self):
class TestMannWhitneyU:
-def setup(self):
+def setup_method(self):
_mwu_state._recursive = True
# All magic numbers are from R wilcox.test unless otherwise specied
@@ -616,15 +616,15 @@ def test_gh_2118(self, x, y, alternative, expected):
method="asymptotic")
assert_allclose(res, expected, rtol=1e-12)
-def teardown(self):
+def teardown_method(self):
_mwu_state._recursive = None
class TestMannWhitneyU_iterative(TestMannWhitneyU):
-def setup(self):
+def setup_method(self):
_mwu_state._recursive = False
-def teardown(self):
+def teardown_method(self):
_mwu_state._recursive = None
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-12-03 10:03:27
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1835 (New)
Package is "python-scipy"
Sat Dec 3 10:03:27 2022 rev:57 rq:1039620 version:1.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-10-27 13:53:20.972315680 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1835/python-scipy.changes
2022-12-03 10:03:33.547214490 +0100
@@ -1,0 +2,5 @@
+Fri Dec 2 11:56:35 UTC 2022 - Daniel Garcia
+
+- Add fix-tests.patch gh#scipy/scipy#16926#issuecomment-1287507634
+
+---
New:
fix-tests.patch
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.bVejz8/_old 2022-12-03 10:03:34.295218647 +0100
+++ /var/tmp/diff_new_pack.bVejz8/_new 2022-12-03 10:03:34.307218714 +0100
@@ -98,6 +98,8 @@
Group: Development/Libraries/Python
URL:https://www.scipy.org
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
+# PATCH-FIX-UPSTREAM gh#scipy/scipy#16926#issuecomment-1287507634
+Patch1: fix-tests.patch
BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module meson-python >= 0.9.0}
++ fix-tests.patch ++
Index: scipy-1.9.3/scipy/sparse/linalg/_eigen/tests/test_svds.py
===
--- scipy-1.9.3.orig/scipy/sparse/linalg/_eigen/tests/test_svds.py
+++ scipy-1.9.3/scipy/sparse/linalg/_eigen/tests/test_svds.py
@@ -786,11 +786,15 @@ class SVDSCommonTests:
@pytest.mark.filterwarnings("ignore:The problem size")
@pytest.mark.parametrize("dtype", (float, complex, np.float32))
def test_small_sigma2(self, dtype):
-if not has_propack:
-pytest.skip("PROPACK not enabled")
-# https://github.com/scipy/scipy/issues/11406
-if dtype == complex and self.solver == 'propack':
-pytest.skip("PROPACK unsupported for complex dtype")
+if self.solver == 'propack':
+if not has_propack:
+pytest.skip("PROPACK not enabled")
+elif dtype == np.float32:
+pytest.skip("Test failures in CI, see gh-17004")
+elif dtype == complex:
+# https://github.com/scipy/scipy/issues/11406
+pytest.skip("PROPACK unsupported for complex dtype")
+
rng = np.random.default_rng(179847540)
# create a 10x10 singular matrix with a 4-dim null space
dim = 4
Index: scipy-1.9.3/scipy/linalg/tests/test_solvers.py
===
--- scipy-1.9.3.orig/scipy/linalg/tests/test_solvers.py
+++ scipy-1.9.3/scipy/linalg/tests/test_solvers.py
@@ -474,7 +474,7 @@ def test_solve_discrete_are():
np.array([[0], [1]]),
np.eye(2),
np.array([[1]]),
- None),
+"Presumed issue with OpenBLAS, see gh-16926"),
# TEST CASE 16 : darex #13
(np.array([[16, 10, -2],
[10, 13, -8],
@@ -617,7 +617,7 @@ def test_solve_generalized_discrete_are(
[7.093648e-01, 6.797027e-01, 1.189977e-01],
[7.546867e-01, 6.550980e-01, 4.983641e-01]]),
np.ones((3, 2)),
- None),
+"Presumed issue with OpenBLAS, see gh-16926"),
# user-reported (under PR-6616) 20-Jan-2017
# tests against the case where E is None but S is provided
(mat20170120['A'],
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-10-27 13:53:06
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2275 (New)
Package is "python-scipy"
Thu Oct 27 13:53:06 2022 rev:56 rq:1030333 version:1.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-10-18 12:44:02.277592334 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2275/python-scipy.changes
2022-10-27 13:53:20.972315680 +0200
@@ -1,0 +2,49 @@
+Thu Oct 20 15:05:16 UTC 2022 - Ben Greiner
+
+- Update to version 1.9.3
+ * SciPy 1.9.3 is a bug-fix release with no new features compared
+to 1.9.2.
+ * #3691: scipy.interpolate.UnivariateSpline segfault
+ * #5286: BUG: multivariate_normal returns a pdf for values
+outside its???
+ * #6551: BUG: stats: inconsistency in docs and behavior of gmean
+and hmean
+ * #9245: running
+scipy.interpolate.tests.test_fitpack::test_bisplev_integer_overflow???
+ * #12471: test_bisplev_integer_overflow: Segmentation fault (core
+dumped)
+ * #13321: Bug: setting iprint=0 hides all output from
+fmin_l_bfgs_b, but???
+ * #13730: `scipy.stats.mood` does not correct for ties
+ * #14019: ks_2samp throws `RuntimeWarning: overflow encountered
+in double_scalars`
+ * #14589: `shgo` error since scipy 1.8.0.dev0+1529.803e52d
+ * #14591: Input data validation for RectSphereBivariateSpline
+ * #15101: BUG: binom.pmf - RuntimeWarning: divide by zero
+ * #15342: BUG: scipy.optimize.minimize: Powell???s method function
+evaluated???
+ * #15964: BUG: lombscargle fails if argument is a view
+ * #16211: BUG: Possible bug when using winsorize on pandas data
+instead???
+ * #16459: BUG: stats.ttest_ind returns wrong p-values with
+permutations
+ * #16500: odr.Model default meta value fails with __getattr__
+ * #16519: BUG: Error in error message for incorrect sample
+dimension in???
+ * #16527: BUG: dimension of isuppz in syevr is mistranslated
+ * #16600: BUG: `KDTree`???s optional argument `eps` seems to have
+no???
+ * #16656: dtype not preserved with operations on sparse arrays
+ * #16751: BUG: `stats.fit` on `boltzmann` expects `bound` for
+`lambda`,???
+ * #17012: BUG: Small oversight in sparse.linalg.lsmr?
+ * #17020: BUG: Build failure due to problems with shebang line in
+cythoner.py
+ * #17088: BUG: stats.rayleigh.fit: returns `loc` that is
+inconsistent???
+ * #17104: BUG? Incorrect branch in `LAMV` / `_specfunc.lamv`
+ * #17196: DOC: keepdims in stats.mode is incorrectly documented
+- Move multibuild flavor ":standard" to unflavored build
+- Test in parallel (pytest-xdist)
+
+---
Old:
scipy-1.9.2.tar.gz
New:
scipy-1.9.3.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.cPYXpt/_old 2022-10-27 13:53:22.744324719 +0200
+++ /var/tmp/diff_new_pack.cPYXpt/_new 2022-10-27 13:53:22.748324740 +0200
@@ -17,12 +17,12 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_9_2
+%define _ver 1_9_3
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
-%if "%{flavor}" == "standard"
+%if "%{flavor}" == ""
%bcond_with hpc
%ifarch armv6l s390 s390x m68k
%bcond_with openblas
@@ -91,7 +91,7 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version:1.9.2
+Version:1.9.3
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
@@ -110,10 +110,9 @@
BuildRequires: meson >= 0.62.2
BuildRequires: pkg-config
BuildRequires: python-rpm-macros >= 20220911
-%if "%{flavor}" == ""
-ExclusiveArch: do_not_build
-%endif
%if %{with test}
+BuildRequires: %{python_module pytest-timeout}
+BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module scipy = %{version}}
BuildRequires: %{python_module threadpoolctl}
@@ -152,7 +151,7 @@
%prep
%autosetup -p1 -n scipy-%{version}
-find . -type f -name "*.py" -exec sed -i "s|#!%{_bindir}/env python||" {} \;
+sed -i '1{/env python/d}' scipy/sparse/linalg/_isolve/tests/test_gcrotmk.py
%ifarch i586
# Limit double floating point precision for x87, triggered by GCC 12.
@@ -248,11 +247,11 @@
donttest+=" or (TestBSR and test_scalar_idx_dtype)"
# error while getting entropy
donttest+=" or (test_cont_basic and 500-200-ncf-arg74)"
+#
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-10-18 12:44:01
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2275 (New)
Package is "python-scipy"
Tue Oct 18 12:44:01 2022 rev:55 rq:1009894 version:1.9.2
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-10-11 18:03:51.365920527 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2275/python-scipy.changes
2022-10-18 12:44:02.277592334 +0200
@@ -1,0 +2,7 @@
+Tue Oct 11 08:36:20 UTC 2022 - Ben Greiner
+
+- Update to version 1.9.2
+ * SciPy 1.9.2 is a bug-fix release with no new features compared
+to 1.9.1.
+
+---
Old:
scipy-1.9.1.tar.gz
New:
scipy-1.9.2.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.RGNwun/_old 2022-10-18 12:44:03.273594601 +0200
+++ /var/tmp/diff_new_pack.RGNwun/_new 2022-10-18 12:44:03.277594610 +0200
@@ -17,7 +17,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_9_1
+%define _ver 1_9_2
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -91,16 +91,16 @@
# TODO explore debundling Boost for standard and hpc
Name: %{package_name}
-Version:1.9.1
+Version:1.9.2
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
Group: Development/Libraries/Python
URL:https://www.scipy.org
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
-BuildRequires: %{python_module Cython >= 0.29.21}
+BuildRequires: %{python_module Cython >= 0.29.32}
BuildRequires: %{python_module devel >= 3.8}
-BuildRequires: %{python_module meson-python >= 0.8.1}
+BuildRequires: %{python_module meson-python >= 0.9.0}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module pybind11 >= 2.4.3}
BuildRequires: %{python_module pybind11-devel >= 2.4.3}
@@ -261,6 +261,7 @@
donttest+=" or (test_discrete_basic and test_rv_sample)"
donttest+=" or (test_distributions and TestLevyStable and nolan_samples and
pct_range0-alpha_range0-beta_range0)"
donttest+=" or (test_distributions and TestLevyStable and test_location_scale
and pdf)"
+donttest+=" or (test_data and test_boost and (betainc or btdtr))"
%endif
%ifarch %arm
donttest+=" or (test_cython_api and eval_sh_chebyt)"
++ scipy-1.9.1.tar.gz -> scipy-1.9.2.tar.gz ++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.9.1.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.2275/scipy-1.9.2.tar.gz differ:
char 5, line 1
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-10-11 18:01:23
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2275 (New)
Package is "python-scipy"
Tue Oct 11 18:01:23 2022 rev:54 rq:1007747 version:1.9.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-08-04 13:23:25.416491876 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2275/python-scipy.changes
2022-10-11 18:03:51.365920527 +0200
@@ -1,0 +2,24 @@
+Sat Sep 10 23:43:22 UTC 2022 - Ben Greiner
+
+- Update to version 1.9.1
+ * SciPy 1.9.1 is a bug-fix release with no new features compared
+to 1.9.0. Notably, some important meson build fixes are
+included.
+- Release 1.9.0
+ * Full changelog at
+https://docs.scipy.org/doc/scipy/release.1.9.0.html
+- Highlights of the 1.9.0 release:
+ * We have modernized our build system to use meson,
+substantially improving our build performance, and providing
+better build-time configuration and cross-compilation support,
+ * Added scipy.optimize.milp, new function for mixed-integer
+linear programming,
+ * Added scipy.stats.fit for fitting discrete and continuous
+distributions to data,
+ * Tensor-product spline interpolation modes were added to
+scipy.interpolate.RegularGridInterpolator,
+ * A new global optimizer (DIviding RECTangles algorithm)
+scipy.optimize.direct.
+- Switch to meson-python PEP517 build
+
+---
Old:
python-scipy-rpmlintrc
scipy-1.8.1.tar.gz
New:
scipy-1.9.1.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.MHOCEH/_old 2022-10-11 18:03:52.333922092 +0200
+++ /var/tmp/diff_new_pack.MHOCEH/_new 2022-10-11 18:03:52.337922099 +0200
@@ -17,7 +17,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_8_0
+%define _ver 1_9_1
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -90,27 +90,26 @@
# TODO explore debundling Boost for standard and hpc
-%{?!python_module:%define python_module() python3-%{**}}
-%define skip_python2 1
-
Name: %{package_name}
-Version:1.8.1
+Version:1.9.1
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
Group: Development/Libraries/Python
URL:https://www.scipy.org
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
-Source100: python-scipy-rpmlintrc
-BuildRequires: %{python_module Cython >= 0.29.18}
+BuildRequires: %{python_module Cython >= 0.29.21}
BuildRequires: %{python_module devel >= 3.8}
+BuildRequires: %{python_module meson-python >= 0.8.1}
+BuildRequires: %{python_module pip}
BuildRequires: %{python_module pybind11 >= 2.4.3}
BuildRequires: %{python_module pybind11-devel >= 2.4.3}
-BuildRequires: %{python_module pythran >= 0.10.0}
-BuildRequires: %{python_module setuptools}
+BuildRequires: %{python_module pythran >= 0.9.12}
+BuildRequires: %{python_module wheel}
BuildRequires: fdupes
-BuildRequires: python-rpm-macros
-BuildRequires: swig
+BuildRequires: meson >= 0.62.2
+BuildRequires: pkg-config
+BuildRequires: python-rpm-macros >= 20220911
%if "%{flavor}" == ""
ExclusiveArch: do_not_build
%endif
@@ -120,10 +119,10 @@
BuildRequires: %{python_module threadpoolctl}
%endif
%if %{without hpc}
-BuildRequires: %{python_module numpy-devel >= 1.17.3}
+BuildRequires: %{python_module numpy-devel >= 1.18.5}
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
-Requires: python-numpy >= 1.17.3
+Requires: python-numpy >= 1.18.5
Requires: python-pybind11 >= 2.4.3
%if %{with openblas}
BuildRequires: openblas-devel
@@ -138,7 +137,7 @@
BuildRequires: lua-lmod
BuildRequires: suse-hpc >= 0.3
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
-Requires: python-numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc >=
1.17.3
+Requires: python-numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc >=
1.18.5
%endif
%python_subpackages
@@ -154,31 +153,31 @@
%prep
%autosetup -p1 -n scipy-%{version}
find . -type f -name "*.py" -exec sed -i "s|#!%{_bindir}/env python||" {} \;
-echo 'ignore:.*The distutils.* is deprecated.*:DeprecationWarning' >>
pytest.ini
%ifarch i586
# Limit double floating point precision for x87, triggered by GCC 12.
%global optflags %(echo "%{optflags} -ffloat-store")
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-08-04 13:23:12
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1521 (New)
Package is "python-scipy"
Thu Aug 4 13:23:12 2022 rev:53 rq:990111 version:1.8.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-05-24 20:31:12.826911207 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1521/python-scipy.changes
2022-08-04 13:23:25.416491876 +0200
@@ -1,0 +2,5 @@
+Mon Jul 18 15:23:43 UTC 2022 - Ben Greiner
+
+- Keep lowercase egg-info despite setuptools 60+
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.z0WOwR/_old 2022-08-04 13:23:26.216494145 +0200
+++ /var/tmp/diff_new_pack.z0WOwR/_new 2022-08-04 13:23:26.220494156 +0200
@@ -61,14 +61,20 @@
%bcond_with ringdisabled
%if %{without hpc}
%define package_name %{pname}
+# for file section
%define p_python_sitearch %{python_sitearch}
+# for inside python_expand
+%define p_python_sitearch_expand %{$python_sitearch}
%define p_prefix %{_prefix}
%define p_bindir %{_bindir}
%else
%{!?compiler_family:%global compiler_family gnu}
%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?ext:-e %{ext}}}
%define package_name %{hpc_package_name %{_ver}}
+# for file section
%define p_python_sitearch %{hpc_python_sitearch}
+# for inside python_expand
+%define p_python_sitearch_expand $($python -c "import sysconfig as s;
print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))")
%define p_prefix %{hpc_prefix}
%define p_bindir %{hpc_bindir}
# Magic for OBS Staging. Only build the flavors required by
@@ -181,16 +187,21 @@
%hpc_setup
module load $python-numpy
%endif
+# Note: SciPy 1.9 will switch to Meson and support for numpy.distutils will be
removed in 1.10
$python setup.py install --prefix=%{p_prefix} --root=%{buildroot}
-%fdupes %{buildroot}%{$python_sitearch}
+# Setuptools 60+ unexpectedly writes the egg-info in CamelCase,
+# upstream published dist-info is lowercase; keep lowercase until above
mentioned switch happens.
+if [ -d
%{buildroot}%{p_python_sitearch_expand}/SciPy-%{version}-py%{$python_bin_suffix}.egg-info
]; then
+ mv
%{buildroot}%{p_python_sitearch_expand}/SciPy-%{version}-py%{$python_bin_suffix}.egg-info
\
+
%{buildroot}%{p_python_sitearch_expand}/scipy-%{version}-py%{$python_bin_suffix}.egg-info
+fi
+%fdupes %{buildroot}%{p_python_sitearch_expand}
}
%if %{with hpc}
%define hpc_module_pname ${python_flavor}-%{shortname}
%{python_expand #
-python_flavor=$(cat _current_flavor)
-sitesearch_path=`$python -c "import sysconfig as s;
print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
-rm -rf
%{buildroot}${sitesearch_path}/scipy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
+rm -rf
%{buildroot}%{p_python_sitearch_expand}/scipy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
%hpc_write_modules_files
#%%Module1.0#
@@ -261,7 +272,7 @@
%files %{python_files}
%license LICENSE.txt
%{p_python_sitearch}/scipy/
-%{p_python_sitearch}/scipy-*-py*.egg-info
+%{p_python_sitearch}/scipy-%{version}*-info
%if %{with hpc}
%define hpc_module_pname %{python_flavor}-scipy
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-05-24 20:30:57
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2254 (New)
Package is "python-scipy"
Tue May 24 20:30:57 2022 rev:52 rq:978687 version:1.8.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-05-04 15:10:16.520107445 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2254/python-scipy.changes
2022-05-24 20:31:12.826911207 +0200
@@ -1,0 +2,6 @@
+Sat May 21 08:12:51 UTC 2022 - andy great
+
+- Update to version 1.8.1.
+ * Bug-fix release with no new features.
+
+---
Old:
scipy-1.8.0.tar.gz
New:
scipy-1.8.1.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.aZDXTR/_old 2022-05-24 20:31:14.490912693 +0200
+++ /var/tmp/diff_new_pack.aZDXTR/_new 2022-05-24 20:31:14.494912696 +0200
@@ -88,7 +88,7 @@
%define skip_python2 1
Name: %{package_name}
-Version:1.8.0
+Version:1.8.1
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
++ scipy-1.8.0.tar.gz -> scipy-1.8.1.tar.gz ++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.8.0.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.2254/scipy-1.8.1.tar.gz differ:
char 5, line 1
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-05-04 15:10:16
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1538 (New)
Package is "python-scipy"
Wed May 4 15:10:16 2022 rev:51 rq:969712 version:1.8.0
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-04-02 18:20:45.338130243 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1538/python-scipy.changes
2022-05-04 15:10:16.520107445 +0200
@@ -1,0 +2,13 @@
+Tue Apr 12 12:20:43 UTC 2022 - Martin Li??ka
+
+- With the previously added -ffloat-store, some tests that fail on i586.
+ Disable them.
+
+---
+Tue Apr 12 06:36:01 UTC 2022 - Martin Li??ka
+
+- Limit double floating point precision for x87, triggered by GCC 12.
+ Fixes test_kolmogorov.py Fatal Python error: Floating point exception
+ which is a double floating-point test.
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.ftgzTa/_old 2022-05-04 15:10:17.500108650 +0200
+++ /var/tmp/diff_new_pack.ftgzTa/_new 2022-05-04 15:10:17.508108660 +0200
@@ -150,6 +150,11 @@
find . -type f -name "*.py" -exec sed -i "s|#!%{_bindir}/env python||" {} \;
echo 'ignore:.*The distutils.* is deprecated.*:DeprecationWarning' >>
pytest.ini
+%ifarch i586
+# Limit double floating point precision for x87, triggered by GCC 12.
+%global optflags %(echo "%{optflags} -ffloat-store")
+%endif
+
%if !%{with test}
%build
%{python_expand #
@@ -235,6 +240,13 @@
donttest+=" or (TestBSR and test_scalar_idx_dtype)"
# error while getting entropy
donttest+=" or (test_cont_basic and 500-200-ncf-arg74)"
+# fails on i586
+%ifarch i586
+donttest+=" or (test_linprog and test_bug_6690)"
+donttest+=" or (test_hausdorff and test_brute_force_comparison_forward)"
+donttest+=" or (test_hausdorff and test_2d_data_forward)"
+donttest+=" or (test_iterative and test_x0_equals_Mb)"
+%endif
%python_exec runtests.py -vv --no-build -m fast -- -k "not ($donttest)"
# prevent failing debuginfo extraction because we did not create anything for
testing
touch debugsourcefiles.list
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-04-02 18:20:32
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1900 (New)
Package is "python-scipy"
Sat Apr 2 18:20:32 2022 rev:50 rq:965742 version:1.8.0
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2022-02-03 23:16:39.368543282 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1900/python-scipy.changes
2022-04-02 18:20:45.338130243 +0200
@@ -1,0 +2,41 @@
+Mon Mar 28 18:16:15 UTC 2022 - Ben Greiner
+
+- Update to version 1.8.0
+ * https://scipy.github.io/devdocs/release.1.8.0.html
+ * SciPy 1.8.0 is the culmination of 6 months of hard work. It
+contains many new features, numerous bug-fixes, improved test
+coverage and better documentation. There have been a number of
+deprecations and API changes in this release. All users are
+encouraged to upgrade to this release, as there are a large
+number of bug-fixes and optimizations. Before upgrading, we
+recommend that users check that their own code does not use
+deprecated SciPy functionality (to do so, run your code with
+python -Wd and check for `DeprecationWarning`s).
+ * A sparse array API has been added for early testing and
+feedback; this work is ongoing, and users should expect minor
+API refinements over the next few releases.
+ * The sparse SVD library PROPACK is now vendored with SciPy, and
+an interface is exposed via scipy.sparse.svds with
+solver='PROPACK'. It is currently default-off due to potential
+issues on Windows that we aim to resolve in the next release,
+but can be optionally enabled at runtime for friendly testing
+with an environment variable setting of USE_PROPACK=1.
+ * A new scipy.stats.sampling submodule that leverages the UNU.RAN
+C library to sample from arbitrary univariate non-uniform
+continuous and discrete distributions
+ * All namespaces that were private but happened to miss
+underscores in their names have been deprecated.
+ * Backwards incompatible changes
+- SciPy has raised the minimum compiler versions to GCC 6.3 on
+ linux and VS2019 on windows. In particular, this means that
+ SciPy may now use C99 and C++14 features. For more details
+ see here.
+- The result for empty bins for scipy.stats.binned_statistic
+ with the builtin 'std' metric is now nan, for consistency
+ with np.std.
+- The function scipy.spatial.distance.wminkowski has been
+ removed. To achieve the same results as before, please use
+ the minkowski distance function with the (optional) w=
+ keyword-argument for the given weight.
+
+---
Old:
scipy-1.7.3.tar.gz
New:
scipy-1.8.0.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.lvWHLX/_old 2022-04-02 18:20:46.830113496 +0200
+++ /var/tmp/diff_new_pack.lvWHLX/_new 2022-04-02 18:20:46.834113451 +0200
@@ -17,7 +17,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_7_3
+%define _ver 1_8_0
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@@ -88,7 +88,7 @@
%define skip_python2 1
Name: %{package_name}
-Version:1.7.3
+Version:1.8.0
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
@@ -97,10 +97,10 @@
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
Source100: python-scipy-rpmlintrc
BuildRequires: %{python_module Cython >= 0.29.18}
-BuildRequires: %{python_module devel >= 3.7}
+BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module pybind11 >= 2.4.3}
BuildRequires: %{python_module pybind11-devel >= 2.4.3}
-BuildRequires: %{python_module pythran}
+BuildRequires: %{python_module pythran >= 0.10.0}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
@@ -111,12 +111,13 @@
%if %{with test}
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module scipy = %{version}}
+BuildRequires: %{python_module threadpoolctl}
%endif
%if %{without hpc}
-BuildRequires: %{python_module numpy-devel >= 1.16.5}
+BuildRequires: %{python_module numpy-devel >= 1.17.3}
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
-Requires: python-numpy >= 1.16.5
+Requires: python-numpy >= 1.17.3
Requires:
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2022-02-03 23:16:10
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1898 (New)
Package is "python-scipy"
Thu Feb 3 23:16:10 2022 rev:49 rq:950300 version:1.7.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2021-07-28 19:19:44.803658607 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1898/python-scipy.changes
2022-02-03 23:16:39.368543282 +0100
@@ -1,0 +2,31 @@
+Sat Jan 29 20:44:30 UTC 2022 - Ben Greiner
+
+- Provide empty debuginfo extraction for :test flavor
+
+---
+Sun Jan 23 17:52:38 UTC 2022 - Ben Greiner
+
+- Update to version 1.7.3
+ * 3rd bugfix release since 1.7.0
+- Highlights from the 1.7.0 release
+ * A new submodule for quasi-Monte Carlo, scipy.stats.qmc, was
+added
+ * The documentation design was updated to use the same
+PyData-Sphinx theme as NumPy and other ecosystem libraries.
+ * We now vendor and leverage the Boost C++ library to enable
+numerous improvements for long-standing weaknesses in
+scipy.stats
+ * scipy.stats has six new distributions, eight new (or
+overhauled) hypothesis tests, a new function for bootstrapping,
+a class that enables fast random variate sampling and
+percentile point function evaluation, and many other
+enhancements.
+ * cdist and pdist distance calculations are faster for several
+metrics, especially weighted cases, thanks to a rewrite to a
+new C++ backend framework
+ * A new class for radial basis function interpolation,
+RBFInterpolator, was added to address issues with the Rbf
+class.
+- Enable fast part of the test suite
+
+---
Old:
scipy-1.6.3.tar.gz
New:
scipy-1.7.3.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.LzHf3N/_old 2022-02-03 23:16:41.840526409 +0100
+++ /var/tmp/diff_new_pack.LzHf3N/_new 2022-02-03 23:16:41.848526354 +0100
@@ -1,7 +1,7 @@
#
# spec file
#
-# Copyright (c) 2021 SUSE LLC
+# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -17,11 +17,11 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_6_0
+%define _ver 1_7_3
%define shortname scipy
%define pname python-%{shortname}
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
+
%if "%{flavor}" == "standard"
%bcond_with hpc
%ifarch armv6l s390 s390x m68k
@@ -38,6 +38,14 @@
%endif
%endif
%endif
+
+%if "%{flavor}" == "test"
+%bcond_with hpc
+%bcond_without test
+%else
+%bcond_with test
+%endif
+
%if "%{flavor}" == "gnu-hpc"
%define compiler_family gnu
%bcond_without hpc
@@ -48,9 +56,7 @@
%define c_f_ver 7
%bcond_without hpc
%endif
-%define skip_python2 1
-# https://numpy.org/neps/nep-0029-deprecation_policy.html
-%define skip_python36 1
+
%{?with_hpc:%{hpc_requires}}
%bcond_with ringdisabled
%if %{without hpc}
@@ -75,11 +81,17 @@
%endif
%{hpc_modules_init openblas}
%endif
+
+# TODO explore debundling Boost for standard and hpc
+
+%{?!python_module:%define python_module() python3-%{**}}
+%define skip_python2 1
+
Name: %{package_name}
-Version:1.6.3
+Version:1.7.3
Release:0
Summary:Scientific Tools for Python
-License:BSD-3-Clause AND LGPL-2.0-or-later
+License:BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0
Group: Development/Libraries/Python
URL:https://www.scipy.org
Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
@@ -88,6 +100,7 @@
BuildRequires: %{python_module devel >= 3.7}
BuildRequires: %{python_module pybind11 >= 2.4.3}
BuildRequires: %{python_module pybind11-devel >= 2.4.3}
+BuildRequires: %{python_module pythran}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
@@ -95,6 +108,10 @@
%if "%{flavor}" == ""
ExclusiveArch: do_not_build
%endif
+%if %{with test}
+BuildRequires: %{python_module pytest}
+BuildRequires: %{python_module scipy = %{version}}
+%endif
%if %{without hpc}
BuildRequires: %{python_module numpy-devel >= 1.16.5}
BuildRequires: gcc-c++
@@ -128,9 +145,11 @@
%{?with_hpc:%{hpc_python_master_package -L -a }}
%prep
-%setup -q -n
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2021-07-28 19:19:29
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.1899 (New)
Package is "python-scipy"
Wed Jul 28 19:19:29 2021 rev:48 rq:908547 version:1.6.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2021-05-05 20:39:42.654990940 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.1899/python-scipy.changes
2021-07-28 19:19:44.803658607 +0200
@@ -1,0 +2,5 @@
+Mon Jul 26 14:37:33 UTC 2021 - Andreas Schwab
+
+- Enable openblas on riscv64
+
+---
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.kG6qKj/_old 2021-07-28 19:19:45.423657793 +0200
+++ /var/tmp/diff_new_pack.kG6qKj/_new 2021-07-28 19:19:45.427657788 +0200
@@ -1,5 +1,5 @@
#
-# spec file for package python-scipy
+# spec file
#
# Copyright (c) 2021 SUSE LLC
#
@@ -24,7 +24,7 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%if "%{flavor}" == "standard"
%bcond_with hpc
- %ifarch armv6l s390 s390x m68k riscv64
+ %ifarch armv6l s390 s390x m68k
%bcond_with openblas
%else
%if 0%{?sle_version} == 120200
@@ -70,7 +70,7 @@
%if %{with ringdisabled}
ExclusiveArch: do_not_build
%endif
- %ifarch armv6l s390 s390x m68k riscv64 i586
+ %ifarch armv6l s390 s390x m68k i586
ExclusiveArch: do_not_build
%endif
%{hpc_modules_init openblas}
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2021-05-05 20:39:39
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2988 (New)
Package is "python-scipy"
Wed May 5 20:39:39 2021 rev:47 rq:890051 version:1.6.3
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2021-04-08 21:03:15.709971683 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2988/python-scipy.changes
2021-05-05 20:39:42.654990940 +0200
@@ -1,0 +2,18 @@
+Mon May 3 01:31:43 UTC 2021 - Arun Persaud
+
+- update to version 1.6.3:
+ * Issues closed
++ #13772: Divide by zero in distance.yule
++ #13796: CI: prerelease_deps failures
++ #13890: TST: spatial rotation failure in (1.6.3) wheels repo
+ (ARM64)
+ * Pull requests
++ #13755: CI: fix the matplotlib warning emitted during builing
+ docs
++ #13773: BUG: Divide by zero in yule dissimilarity of constant
+ vectors
++ #13799: CI/MAINT: deprecated np.typeDict
++ #13819: substitute np.math.factorial with math.factorial
++ #13895: TST: add random seeds in Rotation module
+
+---
Old:
scipy-1.6.2.tar.gz
New:
scipy-1.6.3.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.hIAhPw/_old 2021-05-05 20:39:43.798986030 +0200
+++ /var/tmp/diff_new_pack.hIAhPw/_new 2021-05-05 20:39:43.802986013 +0200
@@ -76,7 +76,7 @@
%{hpc_modules_init openblas}
%endif
Name: %{package_name}
-Version:1.6.2
+Version:1.6.3
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later
++ scipy-1.6.2.tar.gz -> scipy-1.6.3.tar.gz ++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.6.2.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.2988/scipy-1.6.3.tar.gz differ:
char 5, line 1
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2021-04-08 21:03:06
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2401 (New)
Package is "python-scipy"
Thu Apr 8 21:03:06 2021 rev:46 rq:883202 version:1.6.2
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2021-03-17 20:14:29.606869612 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2401/python-scipy.changes
2021-04-08 21:03:15.709971683 +0200
@@ -1,0 +2,18 @@
+Sun Apr 4 16:40:00 UTC 2021 - Arun Persaud
+
+- update to version 1.6.2:
+ * Issues closed for 1.6.2
++ #13512: `stats.gaussian_kde.evaluate` broken on S390X
++ #13584: rotation._compute_euler_from_matrix() creates an array
+ with negative...
++ #13585: Behavior change in coo_matrix when dtype=None
++ #13686: delta0 argument of scipy.odr.ODR() ignored
+ * Pull requests for 1.6.2
++ #12862: REL: put upper bounds on versions of dependencies
++ #13575: BUG: fix `gaussian_kernel_estimate` on S390X
++ #13586: BUG: sparse: Create a utility function `getdata`
++ #13598: MAINT, BUG: enforce contiguous layout for output array
+ in Rotation.as_euler
++ #13687: BUG: fix scipy.odr to consider given delta0 argument
+
+---
Old:
scipy-1.6.1.tar.gz
New:
scipy-1.6.2.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.9f5Olj/_old 2021-04-08 21:03:17.261973359 +0200
+++ /var/tmp/diff_new_pack.9f5Olj/_new 2021-04-08 21:03:17.261973359 +0200
@@ -76,7 +76,7 @@
%{hpc_modules_init openblas}
%endif
Name: %{package_name}
-Version:1.6.1
+Version:1.6.2
Release:0
Summary:Scientific Tools for Python
License:BSD-3-Clause AND LGPL-2.0-or-later
++ scipy-1.6.1.tar.gz -> scipy-1.6.2.tar.gz ++
/work/SRC/openSUSE:Factory/python-scipy/scipy-1.6.1.tar.gz
/work/SRC/openSUSE:Factory/.python-scipy.new.2401/scipy-1.6.2.tar.gz differ:
char 5, line 1
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2021-03-17 20:13:52
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.2401 (New)
Package is "python-scipy"
Wed Mar 17 20:13:52 2021 rev:45 rq:879292 version:1.6.1
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2021-02-10 21:29:49.826236127 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.2401/python-scipy.changes
2021-03-17 20:14:29.606869612 +0100
@@ -1,0 +2,61 @@
+Wed Mar 3 19:09:30 UTC 2021 - Arun Persaud
+
+- update to version 1.6.1:
+ * Issues closed
++ #13072: BLD: Quadpack undefined references
++ #13241: Not enough values to unpack when passing tuple to
+ `blocksize`...
++ #13329: Large sparse matrices of big integers lose information
++ #13342: fftn crashes if shape arguments are supplied as ndarrays
++ #13356: LSQBivariateSpline segmentation fault when quitting the
+ Python...
++ #13358: scipy.spatial.transform.Rotation object can not be
+ deepcopied...
++ #13408: Type of `has_sorted_indices` property
++ #13412: Sorting spherical Voronoi vertices leads to crash in
+ area calculation
++ #13421: linear_sum_assignment - support for matrices with more
+ than 2^31...
++ #13428: `stats.exponnorm.cdf` returns `nan` for small values of
+ `K`...
++ #13465: KDTree.count_neighbors : 0xC005 error for tuple of
+ different...
++ #13468: directed_hausdorff issue with shuffle
++ #13472: Failures on FutureWarnings with numpy 1.20.0 for
+ lfilter, sosfilt...
++ #13565: BUG: 32-bit wheels repo test failure in optimize
+ * Pull requests
++ #13318: REL: prepare for SciPy 1.6.1
++ #13344: BUG: fftpack doesn't work with ndarray shape argument
++ #13345: MAINT: Replace scipy.take with numpy.take in FFT
+ function docstrings.
++ #13354: BUG: optimize: rename private functions to include
+ leading underscore
++ #13387: BUG: Support big-endian platforms and big-endian WAVs
++ #13394: BUG: Fix Python crash by allocating larger array in
+ LSQBivariateSpline
++ #13400: BUG: sparse: Better validation for BSR ctor
++ #13403: BUG: sparse: Propagate dtype through CSR/CSC
+ constructors
++ #13414: BUG: maintain dtype of SphericalVoronoi regions
++ #13422: FIX: optimize: use npy_intp to store array dims for lsap
++ #13425: BUG: spatial: make Rotation picklable
++ #13426: BUG: `has_sorted_indices` and `has_canonical_format`
+ should...
++ #13430: BUG: stats: Fix exponnorm.cdf and exponnorm.sf for small
+ K
++ #13470: MAINT: silence warning generated by
+ `spatial.directed_hausdorff`
++ #13473: TST: fix failures due to new FutureWarnings in NumPy
+ 1.21.dev0
++ #13479: MAINT: update directed_hausdorff Cython code
++ #13485: BUG: KDTree weighted count_neighbors doesn't work
+ between two...
++ #13503: TST: fix `test_fortranfile_read_mixed_record` on
+ big-endian...
++ #13518: DOC: document that pip >= 20.3.3 is needed for macOS 11
++ #13520: BLD: update reqs based on oldest-supported-numpy in
+ pyproject.toml
++ #13567: TST, BUG: adjust tol on test_equivalence
+
+---
Old:
scipy-1.6.0.tar.gz
New:
scipy-1.6.1.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.TCz884/_old 2021-03-17 20:15:07.634921592 +0100
+++ /var/tmp/diff_new_pack.TCz884/_new 2021-03-17 20:15:07.634921592 +0100
@@ -17,22 +17,12 @@
%global flavor @BUILD_FLAVOR@%{nil}
-
%define _ver 1_6_0
%define shortname scipy
%define pname python-%{shortname}
-
-%bcond_with ringdisabled
-
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
-
-%if "%flavor" == ""
-ExclusiveArch: do_not_build
-%endif
-
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
-
-%if "%flavor" == "standard"
+%if "%{flavor}" == "standard"
%bcond_with hpc
%ifarch armv6l s390 s390x m68k riscv64
%bcond_with openblas
@@ -48,25 +38,33 @@
%endif
%endif
%endif
-
-%if "%flavor" == "gnu-hpc"
- %bcond_without hpc
+%if "%{flavor}" == "gnu-hpc"
%define compiler_family gnu
+ %bcond_without hpc
%undefine c_f_ver
%endif
-
-%if "%flavor" == "gnu7-hpc"
- %bcond_without hpc
+%if "%{flavor}" == "gnu7-hpc"
%define compiler_family gnu
%define c_f_ver 7
+ %bcond_without hpc
%endif
-
+%define skip_python2 1
+# https://numpy.org/neps/nep-0029-deprecation_policy.html
+%define
commit python-scipy for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2021-02-10 21:29:48
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new.28504 (New)
Package is "python-scipy"
Wed Feb 10 21:29:48 2021 rev:44 rq:863807 version:1.6.0
Changes:
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2020-12-23 14:19:52.209644699 +0100
+++ /work/SRC/openSUSE:Factory/.python-scipy.new.28504/python-scipy.changes
2021-02-10 21:29:49.826236127 +0100
@@ -1,0 +2,54 @@
+Sat Jan 16 17:14:26 UTC 2021 - Benjamin Greiner
+
+- NEP 29: Last minorversion bump deprecated Python 3.6
+ https://numpy.org/neps/nep-0029-deprecation_policy.html
+- Fix hpc setup for coinstallable python3 flavors, needs
+ gh#openSUSE/hpc#3
+
+---
+Tue Jan 5 07:57:30 UTC 2021 - Paolo Stivanin
+
+- Update to 1.6.0:
+ * scipy.ndimage improvements: Fixes and ehancements to boundary extension
+modes for interpolation functions. Support for complex-valued inputs
+in many filtering and interpolation functions. New grid_mode option
+for scipy.ndimage.zoom to enable results consistent with scikit-image???s
rescale.
+ * scipy.optimize.linprog has fast, new methods for large, sparse
+problems from the HiGHS library.
+ * scipy.stats improvements including new distributions, a new test,
+and enhancements to existing distributions and tests
+ * scipy.special now has improved support for 64-bit LAPACK backend
+ * scipy.odr now has support for 64-bit integer BLAS
+ * scipy.odr.ODR has gained an optional overwrite argument so that
+existing files may be overwritten.
+ * scipy.cluster.hierarchy.DisjointSet has been added for incremental
+connectivity queries.
+ * scipy.cluster.hierarchy.dendrogram return value now also includes
+leaf color information in leaves_color_list.
+ * scipy.interpolate.interp1d has a new method nearest-up, similar to
+the existing method nearest but rounds half-integers up instead of down.
+ * scipy.ndimage.convolve, scipy.ndimage.correlate and their 1d counterparts
+now accept both complex-valued images and/or complex-valued filter kernels.
+All convolution-based filters also now accept complex-valued inputs
+ * scipy.optimize.linprog has fast, new methods for large, sparse problems
+from the HiGHS C++ library
+ * scipy.optimize.quadratic_assignment has been added for approximate
solution of
+the quadratic assignment problem.
+ * scipy.optimize.linear_sum_assignment now has a substantially reduced
+overhead for small cost matrix sizes
+ * scipy.optimize.least_squares has improved performance when the user
+provides the jacobian as a sparse jacobian already in csr_matrix format
+ * scipy.signal.gammatone has been added to design FIR or IIR filters that
+model the human auditory system.
+ * scipy.signal.iircomb has been added to design IIR peaking/notching
+comb filters that can boost/attenuate a frequency from a signal.
+ * scipy.signal.sosfilt performance has been improved to avoid some
+previously- observed slowdowns
+ * scipy.signal.windows.taylor has been added???the Taylor window function
+is commonly used in radar digital signal processing
+ * scipy.signal.gauss_spline now supports list type input for consistency
+with other related SciPy functions
+ * scipy.signal.correlation_lags has been added to allow calculation of
+the lag/ displacement indices array for 1D cross-correlation.
+
+---
Old:
scipy-1.5.4.tar.gz
New:
scipy-1.6.0.tar.gz
Other differences:
--
++ python-scipy.spec ++
--- /var/tmp/diff_new_pack.mZv6aw/_old 2021-02-10 21:29:51.842239048 +0100
+++ /var/tmp/diff_new_pack.mZv6aw/_new 2021-02-10 21:29:51.846239053 +0100
@@ -1,7 +1,7 @@
#
# spec file for package python-scipy
#
-# Copyright (c) 2020 SUSE LLC
+# Copyright (c) 2021 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -18,7 +18,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
-%define _ver 1_5_4
+%define _ver 1_6_0
%define shortname scipy
%define pname python-%{shortname}
@@ -85,8 +85,10 @@
%endif
%define skip_python2 1
+# https://numpy.org/neps/nep-0029-deprecation_policy.html
+%define skip_python36 1
Name: %{package_name}
-Version:1.5.4
+Version:1.6.0
Release:0
Summary:Scientific Tools for Python
License:
