Re: [COOT] click on residue get geometry analysis?

[Paul Emsley]

Francis E Reyes wrote:
Is there a shortcut for this? 


No.

I'm looking for something similar to the analysis you obtain after a 
real space refine.


There is no pre-refinement analysis (i.e. validation).  It would be a 
nice thing.  It is on the list (with 3D markup).



Paul.

[COOT] click on residue get geometry analysis?

[Francis E Reyes]

Is there a shortcut for this? I'm looking for something similar to the  
analysis you obtain after a real space refine.


Thanks

FR

-
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder

gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D

8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D

Re: [COOT] Zalman & Coot

[Bernhard Lohkamp]

You can use the command:

(set-hardware-stereo-angle-factor -1)

to invert the image too. I shall make some buttons for this (and the
Zalman stereo too).
Additionally I am thinking of querying the window position and size to
automatically set this.
Not sure when I'll get to this though (other issues more burning
currently)...

B

> ;; These should be even numbers to keep the stereo
> ;; the right way around
> (set-graphics-window-position 0 0)
> (set-graphics-window-size 1680 1050)
> 
> In general, if the image is inverted, just move the window up or 
> down 1
> pixel.
> 
> 
> 
> On Thu, August 6, 2009 8:04 am, James Partridge wrote:
> > Has anyone noticed that the 3D image in coot is inverted?  Things 
> that are
> > in the front on
> > the mono image are switched to the back in the Zalman mode image.
> > PyMOL has an option to flip the polarization of the image.  Is 
> there a
> > similar command for
> > coot?  Or is there a monitor setting that anyone has figured out?
> >
> > Thanks
> > James
> >
> 
> 
> 
> William G. Scott
> 
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/
>