Dear all,
I have what feels like a trivial question about modelling in coot, but
unfortunately I have not managed to solve it myself.
I would like to create a bond between a P-tRNA and nascent chain and then
subsequently use RSR in Coot for modelling.
What I gathered so far is that I should use acedrg to create the restraints of
the linked unit (in my case "A" to "VAL"). Therefore, I first followed the
tutorial in the Coot development blog which worked well.
But when I try to do the "real world" example with my model, acedrg crashes
(and I could not find a useful error message).
What I could figure out is that it has something to do with the RNA-nucleotide
being referred to as "A", because linking an imported "AMP" molecule to valine
as well as my whole nascent chain works as it should.
Therefore, I wanted to ask if you could briefly tell me what is the correct way
to achieve this type of linkage in Coot?
Many thanks for reading and best wishes,
Helge
P. S. I have modified Oli Clarke's trimmings to automatically load the
"Restraints" menu with "add_module_restraints()", but this is only partially
working as the menu is not showing all entries upon starting coot. I have to
still manually load "Calculate -> Modules -> Restraints" to get the rest of the
entries to show. Is there something I could do to have the full menu from the
get go?
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