Re: [COOT] Get Monomer Function almost freezes system for a while

2008-11-20 Thread Sang Hoon Joo
I am sorry I don't know how to copy those scripts, 
But apparently it runs Refmac quite a while. once the library file is built,
it does not take long to get monomer  next time I run coot, at least for
the same monomer.


[COOT] Get Monomer Function almost freezes system for a while

2008-11-18 Thread Sang
I am running Coot 0.5.0-1 on Mac OS X 10.4.11 (Dual 2.7 GHz Power PC G5, 2
GB DDR SDRAM), which was installed with fink. ccp4 is 6.0.2-7, again
installed with fink.

when I want to get monomer, it freezes quite long time (more than 5 min) to
write cif file using refmac. the monomer I tried was DMS, and PO4, which
shouldn't be difficult.it was a lot quicker when I used Coo5 0.3(less than a
blink by then).
anything I did wrong? or something else?
Thanks for the help.


Re: [COOT] Get Monomer Function almost freezes system for a while

2008-11-18 Thread Paul Emsley

Sang wrote:

I am running Coot 0.5.0-1 on Mac OS X 10.4.11 (Dual 2.7 GHz Power PC G5, 2
GB DDR SDRAM), which was installed with fink. ccp4 is 6.0.2-7, again
installed with fink.

when I want to get monomer, it freezes quite long time (more than 5 min) to
write cif file using refmac. the monomer I tried was DMS, and PO4, which
shouldn't be difficult.


No, a few seconds.


it was a lot quicker when I used Coot 0.3(less than a
blink by then).
anything I did wrong? or something else?
Thanks for the help.


I can't think of why it should be slower for you - my thinking is that 
there may be some sort of refmac issue.


What happens (when are the delays) when you do

(get-monomer EDO)

in the scheme scripting window?

Paul.