Re: [deal.II] Boost serialization linking error
Paras: deal.II 9.0.1 is nearly 3 years old and it's unlikely that anyone will spend the time to figure out in detail what the issue is. I would suggest upgrading to a more recent version and seeing whether the problem persists. That said, this... cd /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/variants and this... /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake and this... -E cmake_link_script CMakeFiles/cookmembranedistributed.dir/link.txt --verbose=1 /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/openmpi-3.1.6-6d7xi6tah53fltt3wtens3wt6zoaysr7/bin/mpic++ -rdynamic -rdynamic -fuse-ld=gold -ggdb CMakeFiles/cookmembranedistributed.dir/cook_membrane_distributed/CookMembraneDistributed.cc.o CMakeFiles/cookmembranedistributed.dir/cook_membrane_distributed/CookMembraneDistributedMain.cc.o -o cookmembranedistributed -Wl,-rpath,/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/dealii-9.0.1-dealii-901-dev-mzkyyfiqp2zxw4ip4cuyx7ok6ym57bp7/lib/libdeal_II.g.so.9.0.1 ../libmncfrac.so /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/dealii-9.0.1-dealii-901-dev-mzkyyfiqp2zxw4ip4cuyx7ok6ym57bp7/lib/libdeal_II.g.so.9.0.1 -ltbb_debug -lboost_iostreams-mt -lboost_serialization-mt -lboost_system-mt -lboost_thread-mt -lboost_regex-mt -lboost_chrono-mt -lboost_date_time-mt -lboost_atomic-mt -lmuelu-adapters -lmuelu-interface -lmuelu -lifpack2 -lanasazitpetra -lModeLaplace -lanasaziepetra -lanasazi -lmapvarlib -lsuplib -lsuplib_c -lsuplib_cpp -lsupes -laprepro_lib -lio_info_lib -lIonit -lIotr -lIohb -lIogs -lIogn -lIovs -lIoexo_fac -lIopx -lIofx -lIoex -lIoss -lnemesis -lexoIIv2for32 -lexodus_for -lexodus -lamesos2 -lbelosxpetra -lbelostpetra -lbelosepetra -lbelos -lml -lifpack -lzoltan2 -lamesos -lgaleri-xpetra -lgaleri-epetra -laztecoo -lxpetra-sup -lxpetra -ltrilinosss -ltpetraext -ltpetrainout -ltpetra -lkokkostsqr -ltpetraclassiclinalg -ltpetraclassicnodeapi -ltpetraclassic -lepetraext -ltriutils -lzoltan -lepetra -lsacado -lkokkoskernels -lteuchoskokkoscomm -lteuchoskokkoscompat -lteuchosremainder -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchosparser -lteuchoscore -lkokkosalgorithms -lkokkoscontainers -lkokkoscore -lgtest -lmatio -ldmumps -lmumps_common -lpord -lumfpack -lcholmod -lccolamd -lcolamd -lcamd -lsuitesparseconfig -lamd -lrt -ladolc -lparpack -larpack -lassimp -lgsl -lgslcblas -lmuparser -lnetcdf_c++ -lnetcdf -lTKBO -lTKBool -lTKBRep -lTKernel -lTKFeat -lTKFillet -lTKG2d -lTKG3d -lTKGeomAlgo -lTKGeomBase -lTKHLR -lTKIGES -lTKMath -lTKMesh -lTKOffset -lTKPrim -lTKShHealing -lTKSTEP -lTKSTEPAttr -lTKSTEPBase -lTKSTEP209 -lTKSTL -lTKTopAlgo -lTKXSBase -lp4est -lsc -lscalapack -lslepc -lpetsc -lHYPRE -lsuperlu_dist -lopenblas -lhdf5hl_fortran -lhdf5_hl -lhdf5_fortran -lhdf5 -lparmetis -lmetis -lz -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lpthread -lquadmath -ldl -lsundials_idas -lsundials_arkode -lsundials_kinsol -lsundials_nvecserial -lsundials_nvecparallel ...are the commands that trigger the error. You can execute them by hand on the command line, and test your hypothesis about the order of libraries by switching what needs to be switched. Best W. -- Wolfgang Bangerth email: bange...@colostate.edu www: http://www.math.colostate.edu/~bangerth/ -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/86dedcca-b197-1bef-acce-bd26840b2879%40colostate.edu.
[deal.II] Boost serialization linking error
Dear All, I am trying to install deal.ii-9.0.1 using spack v.15 on our HPC cluster (Centos 7 OS). The installation works fine. Most of my code compiles without any issues, but when compiling targets using Boost serilization functionalities, I get the following linking errors: iwtm020h@emmy1:/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build$ make VERBOSE=1 /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -S/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac -B/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build --check-build-system CMakeFiles/Makefile.cmake 0 /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -E cmake_progress_start /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/CMakeFiles /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make -f CMakeFiles/mncfrac.dir/build.make CMakeFiles/mncfrac.dir/depend make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' cd /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build && /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -E cmake_depends "Unix Makefiles" /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/CMakeFiles/mncfrac.dir/DependInfo.cmake --color= make[2]: Leaving directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make -f CMakeFiles/mncfrac.dir/build.make CMakeFiles/mncfrac.dir/build make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make[2]: Nothing to be done for `CMakeFiles/mncfrac.dir/build'. make[2]: Leaving directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' [ 54%] Built target mncfrac make -f CMakeFiles/mncfracture.dir/build.make CMakeFiles/mncfracture.dir/depend make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' cd /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build && /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -E cmake_depends "Unix Makefiles" /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/CMakeFiles/mncfracture.dir/DependInfo.cmake --color= make[2]: Leaving directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make -f CMakeFiles/mncfracture.dir/build.make CMakeFiles/mncfracture.dir/build make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make[2]: Nothing to be done for `CMakeFiles/mncfracture.dir/build'. make[2]: Leaving directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' [ 63%] Built target mncfracture make -f variants/CMakeFiles/cookmembranedistributed.dir/build.make variants/CMakeFiles/cookmembranedistributed.dir/depend make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' cd /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build && /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -E cmake_depends "Unix Makefiles" /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/variants /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/variants /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/variants/CMakeFiles/cookmembranedistributed.dir/DependInfo.cmake --color= make[2]: Leaving directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' make -f variants/CMakeFiles/cookmembranedistributed.dir/build.make variants/CMakeFiles/cookmembranedistributed.dir/build make[2]: Entering directory `/home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build' [ 68%] Linking CXX executable cookmembranedistributed cd /home/woody/iwtm/iwtm020h/trial-code/MNC-Frac/_build/variants && /home/woody/iwtm/iwtm020h/spack-install/dealii901-spackv15-gcc/spack/opt/spack/linux-centos7-ivybridge/gcc-7.3.0/cmake-3.17.3-yp7x4tfykdwkolbguxb2nbd46ktt5e6h/bin/cmake -E cmake_link_script CMakeFiles/cookmembranedistributed.dir/link.txt --verbose=1
