Bug#1014452: pyresample: Test failures with rasterio 1.3.0
Control: tags -1 - ftbfs On 7/8/22 09:03, Antonio Valentino wrote: I'm not able to reproduce the issue in sid. I cannot reproduce the FTBFS anymore either, tagging accordingly. Both the package build and autopkgtest seem to work with rasterionv1.3.0 I can reproduce it in bookworm chroot with python3-rasterio from unstable like the debci environment. Start with an uptodate bookworm chroot and login to it: sudo cowbuilder --update \ --basepath /var/cache/pbuilder/base-bookworm.cow/ sudo cowbuilder --login \ --basepath /var/cache/pbuilder/base-bookworm.cow/ Get the source package and install dependencies: cd /tmp/buildd sed -i 's/^#deb/deb/g' /etc/apt/sources.list apt update && apt source pyresample cd pyresample-1.23.0/ apt build-dep pyresample apt install python3-pyresample python-pyresample-test python3-all Install autopkgtest packages: apt install autopkgtest newpid Run autopkgtest with only testing versions of packages: newpid autopkgtest --no-built-binaries \ --output-dir ../autopkgtest.out \ --summary ../autopkgtest.summary \ -- autopkgtest-virt-null This autopkgtest run succeeds. Now add python3-rasterio from unstable: echo "deb http://ftp.nl.debian.org/debian/ unstable main" \ >> /etc/apt/sources.list apt update && apt install python3-rasterio Run autopkgtest again: rm -rfv ../autopkgtest.* newpid autopkgtest --no-built-binaries \ --output-dir ../autopkgtest.out \ --summary ../autopkgtest.summary \ -- autopkgtest-virt-null This run fails like the one on debci. Just importing rasterio fails: python3 >>> import rasterio Traceback (most recent call last): File "", line 1, in File "/usr/lib/python3/dist-packages/rasterio/__init__.py", line 14, in from rasterio.crs import CRS File "rasterio/crs.pyx", line 1, in init rasterio.crs File "rasterio/_base.pyx", line 22, in init rasterio._base File "/usr/lib/python3/dist-packages/rasterio/dtypes.py", line 10, in from rasterio.env import GDALVersion File "/usr/lib/python3/dist-packages/rasterio/env.py", line 16, in from rasterio._env import ( File "rasterio/_env.pyx", line 1, in init rasterio._env ImportError: /usr/lib/python3/dist-packages/rasterio/_filepath.cpython-310-x86_64-linux-gnu.so: undefined symbol: VSIAllocFilesystemPluginCallbacksStruct But it succeeds once libgdal31 from unstable is also used: apt install libgdal31 python3 >>> import rasterio >>> rasterio._show_versions.show_versions() rasterio info: rasterio: 1.3.0 GDAL: 3.5.1 PROJ: 9.0.1 GEOS: 3.11.0 PROJ DATA: /root/.local/share/proj:/usr/share/proj GDAL DATA: None System: python: 3.10.5 (main, Jun 8 2022, 09:26:22) [GCC 11.3.0] executable: /usr/bin/python3 machine: Linux-5.10.0-15-amd64-x86_64-with-glibc2.33 Python deps: affine: 2.3.1 attrs: None certifi: 2020.06.20 click: 8.0.3 cligj: 0.7.2 cython: 0.29.30 numpy: 1.21.5 snuggs: 1.4.7 click-plugins: None setuptools: 59.6.0 > E ImportError: /usr/lib/python3/dist-packages/rasterio/_filepath.cpython-39-x86_64-linux-gnu.so: undefined symbol: VSIAllocFilesystemPluginCallbacksStruct could it be a problem related to a mismatch with the GDAL version? That's possible, the undefined symbols issue has been reported upstream: https://github.com/rasterio/rasterio/issues/2507 Any idea on how to proceed? Rebuilding rasterio with GDAL 3.5.1 seems to fix the symbol issue, let's start there. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1
Bug#1014452: pyresample: Test failures with rasterio 1.3.0
Dear Bas, On Wed, 06 Jul 2022 13:04:41 +0200 Bas Couwenberg wrote: Source: pyresample Version: 1.23.0-1 Severity: serious Tags: ftbfs upstream Dear Maintainer, Your package FTBFS with rasterio 1.3.0 due to test failures which also affect the autopkgtests: TestMisc.test_get_area_def_from_raster self = def test_get_area_def_from_raster(self): from affine import Affine > from rasterio.crs import CRS as RCRS /usr/lib/python3/dist-packages/pyresample/test/test_utils.py:441: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/rasterio/__init__.py:14: in from rasterio.crs import CRS rasterio/crs.pyx:1: in init rasterio.crs ??? rasterio/_base.pyx:22: in init rasterio._base ??? /usr/lib/python3/dist-packages/rasterio/dtypes.py:10: in from rasterio.env import GDALVersion /usr/lib/python3/dist-packages/rasterio/env.py:16: in from rasterio._env import ( _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > ??? E ImportError: /usr/lib/python3/dist-packages/rasterio/_filepath.cpython-39-x86_64-linux-gnu.so: undefined symbol: VSIAllocFilesystemPluginCallbacksStruct rasterio/_env.pyx:1: ImportError ___ TestMisc.test_get_area_def_from_raster_extracts_proj_id self = def test_get_area_def_from_raster_extracts_proj_id(self): > from rasterio.crs import CRS as RCRS /usr/lib/python3/dist-packages/pyresample/test/test_utils.py:465: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ """Rasterio""" from collections import namedtuple from contextlib import ExitStack import logging from logging import NullHandler import os import warnings import rasterio._loading > with rasterio._loading.add_gdal_dll_directories(): E AttributeError: partially initialized module 'rasterio' has no attribute '_loading' (most likely due to a circular import) /usr/lib/python3/dist-packages/rasterio/__init__.py:11: AttributeError I'm not able to reproduce the issue in sid. Both the package build and autopkgtest seem to work with rasterionv1.3.0 Also rasterio seems to properly load the '_loading' module: $ python3 Python 3.10.5 (main, Jun 8 2022, 09:26:22) [GCC 11.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import rasterio >>> rasterio.__version__ '1.3.0' >>> rasterio._loading '/usr/lib/python3/dist-packages/rasterio/_loading.py'> I see > E ImportError: /usr/lib/python3/dist-packages/rasterio/_filepath.cpython-39-x86_64-linux-gnu.so: undefined symbol: VSIAllocFilesystemPluginCallbacksStruct could it be a problem related to a mismatch with the GDAL version? Any idea on how to proceed? kind regards -- Antonio Valentino
Bug#1014452: pyresample: Test failures with rasterio 1.3.0
Source: pyresample Version: 1.23.0-1 Severity: serious Tags: ftbfs upstream Dear Maintainer, Your package FTBFS with rasterio 1.3.0 due to test failures which also affect the autopkgtests: TestMisc.test_get_area_def_from_raster self = def test_get_area_def_from_raster(self): from affine import Affine > from rasterio.crs import CRS as RCRS /usr/lib/python3/dist-packages/pyresample/test/test_utils.py:441: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/rasterio/__init__.py:14: in from rasterio.crs import CRS rasterio/crs.pyx:1: in init rasterio.crs ??? rasterio/_base.pyx:22: in init rasterio._base ??? /usr/lib/python3/dist-packages/rasterio/dtypes.py:10: in from rasterio.env import GDALVersion /usr/lib/python3/dist-packages/rasterio/env.py:16: in from rasterio._env import ( _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > ??? E ImportError: /usr/lib/python3/dist-packages/rasterio/_filepath.cpython-39-x86_64-linux-gnu.so: undefined symbol: VSIAllocFilesystemPluginCallbacksStruct rasterio/_env.pyx:1: ImportError ___ TestMisc.test_get_area_def_from_raster_extracts_proj_id self = def test_get_area_def_from_raster_extracts_proj_id(self): > from rasterio.crs import CRS as RCRS /usr/lib/python3/dist-packages/pyresample/test/test_utils.py:465: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ """Rasterio""" from collections import namedtuple from contextlib import ExitStack import logging from logging import NullHandler import os import warnings import rasterio._loading > with rasterio._loading.add_gdal_dll_directories(): E AttributeError: partially initialized module 'rasterio' has no attribute '_loading' (most likely due to a circular import) /usr/lib/python3/dist-packages/rasterio/__init__.py:11: AttributeError Other tests raise the same AttributeError, see: https://ci.debian.net/data/autopkgtest/testing/amd64/p/pyresample/23427351/log.gz Kind Regards, Bas
