Bug#622345: imagej: still the same with Squeeze...
Hi Andreas, thank You for your patience. ImageJ now works OK. I do not know the reason (lame answer, I know) - therefore I did not send a message, as I do not know what the cure was. What may be the cause: after one of the updates, the machine died after restart (no reaction on keyboard input or mouse input), so I decided to not to waste time with bug fixing (well, maybe it could gave me invaluable lessons in linux administration, but...) and reinstalled the system. Here is the output of Michael's suggested commands (I have got CZ locales): /usr/sbin/update-java-alternatives --list : java-6-openjdk 1061 /usr/lib/jvm/java-6-openjdk /usr/sbin/update-alternatives --display java java - automatický režim odkaz momentálně ukazuje na /usr/lib/jvm/java-6-openjdk/jre/bin/java /usr/bin/gij-4.4 - priorita 1044 /usr/lib/jvm/java-6-openjdk/jre/bin/java - priorita 1061 závislost java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz Momentální „nejlepší“ verze je „/usr/lib/jvm/java-6-openjdk/jre/bin/java“. My attempt to translate it: java - automatic mode link currently points to /usr/lib/jvm/java-6-openjdk/jre/bin/java /usr/bin/gij-4.4 - priority 1044 /usr/lib/jvm/java-6-openjdk/jre/bin/java - priority 1061 dependency java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz Current "best" version is „/usr/lib/jvm/java-6-openjdk/jre/bin/java“ Again, thanks for Your help and patience. Best, Martin Cituji Andreas Tille : Hi Matrtin, do you continuosely observe this problem? If yes, could you please follow the instructions given by Michael below? If it is not possible to reproduce the problem I'm tempted to lower the severity of this problem. Kind regards Andreas. On Fri, Jul 22, 2011 at 03:53:54PM +0200, Michael Schutte wrote: Hi Martin! On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote: > Here is the sample session: > > louskacek@zouzel:~$ imagej > Open other images in this ImageJ panel as follows: > imagej -p 1 [ ... ] > > #guess what happens here :-) > #yes, you are right, the main panel appears and disappears > #with this version it is faster than before :-) > > Exception in thread "main" java.lang.NullPointerException >at java.awt.Component.setDropTarget(libgcj.so.10) >at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) >at ij.IJ.runPlugIn(IJ.java:156) >at ij.IJ.runPlugIn(IJ.java:139) >at ij.ImageJ.(ImageJ.java:196) >at ij.ImageJ.main(ImageJ.java:588) > louskacek@zouzel:~$ Are you still experiencing this issue? If so, it would be useful to see the output for the commands /usr/sbin/update-java-alternatives --list and /usr/sbin/update-alternatives --display java because I suspect the problem is due to gij somehow being the default JRE implementation on your system. I can indeed reproduce the bug by running “gij-4.6 -jar /usr/share/java/ij.jar”. All the best, -- Michael Schutte | michi@{uiae.at,debian.org} Innsbruck, Austria| happily accepting encrypted mail OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A ___ Debian-med-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Bug#622345: imagej: still the same with Squeeze...
Hi Matrtin, do you continuosely observe this problem? If yes, could you please follow the instructions given by Michael below? If it is not possible to reproduce the problem I'm tempted to lower the severity of this problem. Kind regards Andreas. On Fri, Jul 22, 2011 at 03:53:54PM +0200, Michael Schutte wrote: > Hi Martin! > > On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote: > > Here is the sample session: > > > > louskacek@zouzel:~$ imagej > > Open other images in this ImageJ panel as follows: > > imagej -p 1 [ ... ] > > > > #guess what happens here :-) > > #yes, you are right, the main panel appears and disappears > > #with this version it is faster than before :-) > > > > Exception in thread "main" java.lang.NullPointerException > >at java.awt.Component.setDropTarget(libgcj.so.10) > >at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) > >at ij.IJ.runPlugIn(IJ.java:156) > >at ij.IJ.runPlugIn(IJ.java:139) > >at ij.ImageJ.(ImageJ.java:196) > >at ij.ImageJ.main(ImageJ.java:588) > > louskacek@zouzel:~$ > > Are you still experiencing this issue? If so, it would be useful to see > the output for the commands > > /usr/sbin/update-java-alternatives --list > > and > /usr/sbin/update-alternatives --display java > > because I suspect the problem is due to gij somehow being the default > JRE implementation on your system. I can indeed reproduce the bug by > running “gij-4.6 -jar /usr/share/java/ij.jar”. > > All the best, > -- > Michael Schutte | michi@{uiae.at,debian.org} > Innsbruck, Austria| happily accepting encrypted mail > OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A > ___ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Bug#622345: imagej: still the same with Squeeze...
Hi Martin! On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote: > Here is the sample session: > > louskacek@zouzel:~$ imagej > Open other images in this ImageJ panel as follows: > imagej -p 1 [ ... ] > > #guess what happens here :-) > #yes, you are right, the main panel appears and disappears > #with this version it is faster than before :-) > > Exception in thread "main" java.lang.NullPointerException >at java.awt.Component.setDropTarget(libgcj.so.10) >at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) >at ij.IJ.runPlugIn(IJ.java:156) >at ij.IJ.runPlugIn(IJ.java:139) >at ij.ImageJ.(ImageJ.java:196) >at ij.ImageJ.main(ImageJ.java:588) > louskacek@zouzel:~$ Are you still experiencing this issue? If so, it would be useful to see the output for the commands /usr/sbin/update-java-alternatives --list and /usr/sbin/update-alternatives --display java because I suspect the problem is due to gij somehow being the default JRE implementation on your system. I can indeed reproduce the bug by running “gij-4.6 -jar /usr/share/java/ij.jar”. All the best, -- Michael Schutte | michi@{uiae.at,debian.org} Innsbruck, Austria| happily accepting encrypted mail OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A signature.asc Description: Digital signature
Bug#622345: imagej: still the same with Squeeze...
On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote: > I upgraded to Squeeze (with ImageJ from Sid, ver. 1.45e-1), but it did not > make things better (neither did Squeeze's original version). > Any other idea how to solve this? No. I do not have any idea at all. There are no other reports like this about problems with imagej. I'm testing every package before I upload it and never have observed a problem like this. For sure that's no reason - but I have just no idea what to try next. > Around me there are some Windows machines and ImageJ seems to run smoothly :-) > I have not anything else with Debian, but I may try it on other machines > with Ubuntu Maverick Meerkat or SuseLinuxEnterpriseDesktop 11 > if that could help find the solution of the problem. Shall I do it? Ubuntu is usually featuring the same packages as Debian (hopefully). Trying under Ubuntu might be a reasonable idea. > Here is the sample session: > > louskacek@zouzel:~$ imagej > Open other images in this ImageJ panel as follows: > imagej -p 1 [ ... ] > > #guess what happens here :-) > #yes, you are right, the main panel appears and disappears > #with this version it is faster than before :-) > > Exception in thread "main" java.lang.NullPointerException >at java.awt.Component.setDropTarget(libgcj.so.10) >at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) >at ij.IJ.runPlugIn(IJ.java:156) >at ij.IJ.runPlugIn(IJ.java:139) >at ij.ImageJ.(ImageJ.java:196) >at ij.ImageJ.main(ImageJ.java:588) Could you try sending this problem report to upstream ImageJ? This would be probably more easy as if I would work as proxy inbetween. Please make sure you keep the bug report in CC. Good luck Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Bug#622345: imagej: still the same with Squeeze...
Package: imagej Version: 1.45e-1 Severity: normal Hi, I upgraded to Squeeze (with ImageJ from Sid, ver. 1.45e-1), but it did not make things better (neither did Squeeze's original version). Any other idea how to solve this? Around me there are some Windows machines and ImageJ seems to run smoothly :-) I have not anything else with Debian, but I may try it on other machines with Ubuntu Maverick Meerkat or SuseLinuxEnterpriseDesktop 11 if that could help find the solution of the problem. Shall I do it? Best, Martin W. Here is the sample session: louskacek@zouzel:~$ imagej Open other images in this ImageJ panel as follows: imagej -p 1 [ ... ] #guess what happens here :-) #yes, you are right, the main panel appears and disappears #with this version it is faster than before :-) Exception in thread "main" java.lang.NullPointerException at java.awt.Component.setDropTarget(libgcj.so.10) at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) at ij.IJ.runPlugIn(IJ.java:156) at ij.IJ.runPlugIn(IJ.java:139) at ij.ImageJ.(ImageJ.java:196) at ij.ImageJ.main(ImageJ.java:588) louskacek@zouzel:~$ -- System Information: Debian Release: 6.0.1 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 2.6.26-2-amd64 (SMP w/2 CPU cores) Locale: LANG=cs_CZ.UTF-8, LC_CTYPE=cs_CZ.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages imagej depends on: ii openjdk-6-jre 6b18-1.8.3-2 OpenJDK Java runtime, using Hotspo imagej recommends no packages. Versions of packages imagej suggests: pn java-virtual-machine (no description available) -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org