Bug#622345: imagej: still the same with Squeeze...
Hi Andreas,
thank You for your patience.
ImageJ now works OK. I do not know the reason (lame answer, I know) -
therefore I did not send a message, as I do not know what the cure was.
What may be the cause: after one of the updates, the machine died
after restart (no reaction on keyboard input or mouse input), so I
decided to not to waste time with bug fixing (well, maybe it could
gave me invaluable lessons in linux administration, but...) and
reinstalled the system.
Here is the output of Michael's suggested commands (I have got CZ locales):
/usr/sbin/update-java-alternatives --list :
java-6-openjdk 1061 /usr/lib/jvm/java-6-openjdk
/usr/sbin/update-alternatives --display java
java - automatický režim
odkaz momentálně ukazuje na /usr/lib/jvm/java-6-openjdk/jre/bin/java
/usr/bin/gij-4.4 - priorita 1044
/usr/lib/jvm/java-6-openjdk/jre/bin/java - priorita 1061
závislost java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz
Momentální „nejlepší“ verze je „/usr/lib/jvm/java-6-openjdk/jre/bin/java“.
My attempt to translate it:
java - automatic mode
link currently points to /usr/lib/jvm/java-6-openjdk/jre/bin/java
/usr/bin/gij-4.4 - priority 1044
/usr/lib/jvm/java-6-openjdk/jre/bin/java - priority 1061
dependency java.1.gz: /usr/lib/jvm/java-6-openjdk/jre/man/man1/java.1.gz
Current best version is „/usr/lib/jvm/java-6-openjdk/jre/bin/java“
Again, thanks for Your help and patience.
Best,
Martin
Cituji Andreas Tille ti...@debian.org:
Hi Matrtin,
do you continuosely observe this problem? If yes, could you please
follow the instructions given by Michael below? If it is not possible
to reproduce the problem I'm tempted to lower the severity of this
problem.
Kind regards
Andreas.
On Fri, Jul 22, 2011 at 03:53:54PM +0200, Michael Schutte wrote:
Hi Martin!
On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote:
Here is the sample session:
louskacek@zouzel:~$ imagej
Open other images in this ImageJ panel as follows:
imagej -p 1 image1 [image2 ... imageN]
#guess what happens here :-)
#yes, you are right, the main panel appears and disappears
#with this version it is faster than before :-)
Exception in thread main java.lang.NullPointerException
at java.awt.Component.setDropTarget(libgcj.so.10)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:28)
at ij.IJ.runPlugIn(IJ.java:156)
at ij.IJ.runPlugIn(IJ.java:139)
at ij.ImageJ.init(ImageJ.java:196)
at ij.ImageJ.main(ImageJ.java:588)
louskacek@zouzel:~$
Are you still experiencing this issue? If so, it would be useful to see
the output for the commands
/usr/sbin/update-java-alternatives --list
and
/usr/sbin/update-alternatives --display java
because I suspect the problem is due to gij somehow being the default
JRE implementation on your system. I can indeed reproduce the bug by
running “gij-4.6 -jar /usr/share/java/ij.jar”.
All the best,
--
Michael Schutte | michi@{uiae.at,debian.org}
Innsbruck, Austria| happily accepting encrypted mail
OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A
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Bug#622345: imagej: still the same with Squeeze...
Hi Matrtin,
do you continuosely observe this problem? If yes, could you please
follow the instructions given by Michael below? If it is not possible
to reproduce the problem I'm tempted to lower the severity of this
problem.
Kind regards
Andreas.
On Fri, Jul 22, 2011 at 03:53:54PM +0200, Michael Schutte wrote:
Hi Martin!
On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote:
Here is the sample session:
louskacek@zouzel:~$ imagej
Open other images in this ImageJ panel as follows:
imagej -p 1 image1 [image2 ... imageN]
#guess what happens here :-)
#yes, you are right, the main panel appears and disappears
#with this version it is faster than before :-)
Exception in thread main java.lang.NullPointerException
at java.awt.Component.setDropTarget(libgcj.so.10)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:28)
at ij.IJ.runPlugIn(IJ.java:156)
at ij.IJ.runPlugIn(IJ.java:139)
at ij.ImageJ.init(ImageJ.java:196)
at ij.ImageJ.main(ImageJ.java:588)
louskacek@zouzel:~$
Are you still experiencing this issue? If so, it would be useful to see
the output for the commands
/usr/sbin/update-java-alternatives --list
and
/usr/sbin/update-alternatives --display java
because I suspect the problem is due to gij somehow being the default
JRE implementation on your system. I can indeed reproduce the bug by
running “gij-4.6 -jar /usr/share/java/ij.jar”.
All the best,
--
Michael Schutte | michi@{uiae.at,debian.org}
Innsbruck, Austria| happily accepting encrypted mail
OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A
___
Debian-med-packaging mailing list
debian-med-packag...@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
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Bug#622345: imagej: still the same with Squeeze...
Hi Martin!
On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote:
Here is the sample session:
louskacek@zouzel:~$ imagej
Open other images in this ImageJ panel as follows:
imagej -p 1 image1 [image2 ... imageN]
#guess what happens here :-)
#yes, you are right, the main panel appears and disappears
#with this version it is faster than before :-)
Exception in thread main java.lang.NullPointerException
at java.awt.Component.setDropTarget(libgcj.so.10)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:28)
at ij.IJ.runPlugIn(IJ.java:156)
at ij.IJ.runPlugIn(IJ.java:139)
at ij.ImageJ.init(ImageJ.java:196)
at ij.ImageJ.main(ImageJ.java:588)
louskacek@zouzel:~$
Are you still experiencing this issue? If so, it would be useful to see
the output for the commands
/usr/sbin/update-java-alternatives --list
and
/usr/sbin/update-alternatives --display java
because I suspect the problem is due to gij somehow being the default
JRE implementation on your system. I can indeed reproduce the bug by
running “gij-4.6 -jar /usr/share/java/ij.jar”.
All the best,
--
Michael Schutte | michi@{uiae.at,debian.org}
Innsbruck, Austria| happily accepting encrypted mail
OpenPGP: 0x16fb 517b a866 c3f6 8f11 1485 f3e4 122f 1D8C 261A
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Description: Digital signature
Bug#622345: imagej: still the same with Squeeze...
On Sat, Apr 16, 2011 at 02:25:11AM +0200, Martin Weiser wrote: I upgraded to Squeeze (with ImageJ from Sid, ver. 1.45e-1), but it did not make things better (neither did Squeeze's original version). Any other idea how to solve this? No. I do not have any idea at all. There are no other reports like this about problems with imagej. I'm testing every package before I upload it and never have observed a problem like this. For sure that's no reason - but I have just no idea what to try next. Around me there are some Windows machines and ImageJ seems to run smoothly :-) I have not anything else with Debian, but I may try it on other machines with Ubuntu Maverick Meerkat or SuseLinuxEnterpriseDesktop 11 if that could help find the solution of the problem. Shall I do it? Ubuntu is usually featuring the same packages as Debian (hopefully). Trying under Ubuntu might be a reasonable idea. Here is the sample session: louskacek@zouzel:~$ imagej Open other images in this ImageJ panel as follows: imagej -p 1 image1 [image2 ... imageN] #guess what happens here :-) #yes, you are right, the main panel appears and disappears #with this version it is faster than before :-) Exception in thread main java.lang.NullPointerException at java.awt.Component.setDropTarget(libgcj.so.10) at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) at ij.IJ.runPlugIn(IJ.java:156) at ij.IJ.runPlugIn(IJ.java:139) at ij.ImageJ.init(ImageJ.java:196) at ij.ImageJ.main(ImageJ.java:588) Could you try sending this problem report to upstream ImageJ? This would be probably more easy as if I would work as proxy inbetween. Please make sure you keep the bug report in CC. Good luck Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#622345: imagej: still the same with Squeeze...
Package: imagej Version: 1.45e-1 Severity: normal Hi, I upgraded to Squeeze (with ImageJ from Sid, ver. 1.45e-1), but it did not make things better (neither did Squeeze's original version). Any other idea how to solve this? Around me there are some Windows machines and ImageJ seems to run smoothly :-) I have not anything else with Debian, but I may try it on other machines with Ubuntu Maverick Meerkat or SuseLinuxEnterpriseDesktop 11 if that could help find the solution of the problem. Shall I do it? Best, Martin W. Here is the sample session: louskacek@zouzel:~$ imagej Open other images in this ImageJ panel as follows: imagej -p 1 image1 [image2 ... imageN] #guess what happens here :-) #yes, you are right, the main panel appears and disappears #with this version it is faster than before :-) Exception in thread main java.lang.NullPointerException at java.awt.Component.setDropTarget(libgcj.so.10) at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) at ij.IJ.runPlugIn(IJ.java:156) at ij.IJ.runPlugIn(IJ.java:139) at ij.ImageJ.init(ImageJ.java:196) at ij.ImageJ.main(ImageJ.java:588) louskacek@zouzel:~$ -- System Information: Debian Release: 6.0.1 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 2.6.26-2-amd64 (SMP w/2 CPU cores) Locale: LANG=cs_CZ.UTF-8, LC_CTYPE=cs_CZ.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages imagej depends on: ii openjdk-6-jre 6b18-1.8.3-2 OpenJDK Java runtime, using Hotspo imagej recommends no packages. Versions of packages imagej suggests: pn java-virtual-machine none (no description available) -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
