Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)
Thanks for fixing this so quickly! On Thu, Jan 05, 2017 at 08:13:37PM -0600, Dirk Eddelbuettel wrote: > > On 6 January 2017 at 02:53, Santiago Vila wrote: > | Hi. > | > | I've triggered rebuilds in reproducible builds > > Why? That wasn't what I asked you to do. > > | and it also fails there: > | > | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rmpi.html > > Well, doh. Computers and being deterministic and all that. Well, to clarify a little bit, by "it also fails" I was referring only to the fact that the package failed to build, and not to the fact that it builds reproducibly or not. The URL was, then, just a reference for the build failure which was independent from buildd.debian.org and my own autobuilder. I have a (personal) category of FTBFS bugs which fail randomly: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-randomly;users=sanv...@debian.org Since the failure of rmpi was not of this kind, you did not really need my help to debug it, and I could continue reporting other bugs (or going to bed, as it was late here :-). Sorry if it soundad like I did not want to be helpful. Thanks.
Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)
On 6 January 2017 at 02:53, Santiago Vila wrote: | Hi. | | I've triggered rebuilds in reproducible builds Why? That wasn't what I asked you to do. | and it also fails there: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rmpi.html Well, doh. Computers and being deterministic and all that. Dirk | | in both testing and unstable, so it should be easy to reproduce. | (i.e. please try it for yourself first). | | Thanks. -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)
Hi. I've triggered rebuilds in reproducible builds and it also fails there: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rmpi.html in both testing and unstable, so it should be easy to reproduce. (i.e. please try it for yourself first). Thanks.
Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)
On 6 January 2017 at 00:53, Santiago Vila wrote: | Package: src:rmpi | Version: 0.6-6-1 | Severity: serious | | Dear maintainer: | | I tried to build this package in stretch with "dpkg-buildpackage -B" | but it failed: | | | [...] | debian/rules build-arch | CDBS WARNING:simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead | test -x debian/rules | mkdir -p "." | /usr/bin/make -f debian/rules reverse-config | make[1]: Entering directory '/<>' | CDBS WARNING:simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead | make[1]: 'reverse-config' is up to date. | make[1]: Leaving directory '/<>' | if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi | patches: | if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi | if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ | | [... snipped ...] | | if test -f /usr/bin/xvfb-run; then\ |xvfb-run -a\ | R CMD INSTALL -l /<>/debian/r-cran-rmpi/usr/lib/R/site-library --clean \ | "--no-test-load" . \ | "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ | ; \ | else\ |R CMD INSTALL -l /<>/debian/r-cran-rmpi/usr/lib/R/site-library\ | --clean "--no-test-load" . \ | "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ | ; \ | fi | * installing *source* package 'Rmpi' ... | ** package 'Rmpi' successfully unpacked and MD5 sums checked | checking for gcc... gcc -std=gnu99 | checking whether the C compiler works... yes | checking for C compiler default output file name... a.out | checking for suffix of executables... | checking whether we are cross compiling... no | checking for suffix of object files... o | checking whether we are using the GNU C compiler... yes | checking whether gcc -std=gnu99 accepts -g... yes | checking for gcc -std=gnu99 option to accept ISO C89... none needed | checking how to run the C preprocessor... gcc -std=gnu99 -E | checking for grep that handles long lines and -e... /bin/grep | checking for egrep... /bin/grep -E | checking for ANSI C header files... yes | checking for sys/types.h... yes | checking for sys/stat.h... yes | checking for stdlib.h... yes | checking for string.h... yes | checking for memory.h... yes | checking for strings.h... yes | checking for inttypes.h... yes | checking for stdint.h... yes | checking for unistd.h... yes | checking mpi.h usability... no | checking mpi.h presence... no | checking for mpi.h... no | configure: error: "Cannot find mpi.h header file" | ERROR: configuration failed for package 'Rmpi' | * removing '/<>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi' | /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed | make: *** [R_any_arch] Error 1 | dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 | | | This is just how the build ends, not necessarily the relevant part. | | I've put several build logs here: | | https://people.debian.org/~sanvila/build-logs/rmpi/ | | If this is really a bug in one of the build-depends, please use reassign and affects, | so that this is still visible in the page for this package. | | The bug should be reproducible with sbuild on a single CPU virtual machine. Probably a side effect of the OpenMPI v2 changes. The configure for this is very much ad-hoc and grown. Could you have a look and test? if test -z "$MPI_ROOT" ; then for d in /opt/lib /usr/lib /usr /usr/local/lib /usr/local \ /usr/lib64/mpi/gcc/openmpi; do if test -f $d/include/mpi.h && test -d $d/lib/openmpi; then echo "I am here $d and it is OpenMPI" MPI_ROOT=$d MPITYPE="OPENMPI" break elif test -f $d/include/openmpi/mpi.h && test -d $d/lib/openmpi; then echo "I am here $d and it is OpenMPI" MPI_ROOT=$d MPITYPE="OPENMPI" MPI_INCLUDE_PATH=$d/include/openmpi break elif test -f $d/include/openmpi/mpi.h && test -d $d/lib64/openmpi; then echo "I am here $d and it is OpenMPI" MPI_ROOT=$d MPITYPE="OPENMPI" MPI_INCLUDE_PATH=$d/include/openmpi break elif test -f $d/openmpi/include/mpi.h && test -d $d/openmpi/lib; then echo "I am here $d/openmpi and it is OpenMPI" MPI_ROOT=$d/openmpi MPITYPE="OPENMPI" MPI_INCLUDE_PATH=$d/include/openmpi break elif test -f $
Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)
Package: src:rmpi Version: 0.6-6-1 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -B" but it failed: [...] debian/rules build-arch CDBS WARNING:simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory '/<>' CDBS WARNING:simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead make[1]: 'reverse-config' is up to date. make[1]: Leaving directory '/<>' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ [... snipped ...] if test -f /usr/bin/xvfb-run; then \ xvfb-run -a\ R CMD INSTALL -l /<>/debian/r-cran-rmpi/usr/lib/R/site-library --clean \ "--no-test-load" . \ "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ ; \ else\ R CMD INSTALL -l /<>/debian/r-cran-rmpi/usr/lib/R/site-library\ --clean "--no-test-load" . \ "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ ; \ fi * installing *source* package 'Rmpi' ... ** package 'Rmpi' successfully unpacked and MD5 sums checked checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no configure: error: "Cannot find mpi.h header file" ERROR: configuration failed for package 'Rmpi' * removing '/<>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 This is just how the build ends, not necessarily the relevant part. I've put several build logs here: https://people.debian.org/~sanvila/build-logs/rmpi/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the page for this package. The bug should be reproducible with sbuild on a single CPU virtual machine. Thanks.
