Bug#927850: unblock: htslib/1.9-11
Hey Andreas, I think a helpful ftpmaster person converted my simple request into "doing the right thing" about the reverse-(build-)deps as well. I will repeat the request with references to both this bug and that previous request. -- Michael R. Crusoe Co-founder & Lead, Common Workflow Language project m...@commonwl.org On Wed, May 1, 2019, 06:52 Andreas Tille wrote: > Hi Michael, > > it seems you found a clever way to ask ftpmaster for removal of a set of > packages for i386 architectures in #914991. Would you mind to do this > again / update the current versions of those packages. For the next five > days I'm occupied with non-Debian real life and it would be great if this > issue would be settled. > > Kind regards > > Andreas. > > On Tue, Apr 30, 2019 at 09:56:57PM +0200, Paul Gevers wrote: > > Hi, > > > > On 30-04-2019 21:39, Andreas Tille wrote: > > > I have no idea why the packages re-appeared after #914991 was closed. > > > > Probably newer versions got uploaded to unstable, which built on all > > releases where they could. > > > > > Is there any way to easily ask ftpmaster to redo the removals that > where > > > done before? > > > > I don't, sorry. > > > > Paul > > > > > > > -- > http://fam-tille.de >
Bug#927850: unblock: htslib/1.9-11
Hi Michael, it seems you found a clever way to ask ftpmaster for removal of a set of packages for i386 architectures in #914991. Would you mind to do this again / update the current versions of those packages. For the next five days I'm occupied with non-Debian real life and it would be great if this issue would be settled. Kind regards Andreas. On Tue, Apr 30, 2019 at 09:56:57PM +0200, Paul Gevers wrote: > Hi, > > On 30-04-2019 21:39, Andreas Tille wrote: > > I have no idea why the packages re-appeared after #914991 was closed. > > Probably newer versions got uploaded to unstable, which built on all > releases where they could. > > > Is there any way to easily ask ftpmaster to redo the removals that where > > done before? > > I don't, sorry. > > Paul > -- http://fam-tille.de
Bug#927850: unblock: htslib/1.9-11
Hi, On 30-04-2019 21:39, Andreas Tille wrote: > I have no idea why the packages re-appeared after #914991 was closed. Probably newer versions got uploaded to unstable, which built on all releases where they could. > Is there any way to easily ask ftpmaster to redo the removals that where > done before? I don't, sorry. Paul signature.asc Description: OpenPGP digital signature
Bug#927850: unblock: htslib/1.9-11
Hi Paul, I have no idea why the packages re-appeared after #914991 was closed. Is there any way to easily ask ftpmaster to redo the removals that where done before? Kind regards Andreas. On Tue, Apr 30, 2019 at 06:31:30PM +0200, Paul Gevers wrote: > Hi > > Bug 914991 had this list removed. > > augustus | 3.3+dfsg-2 | hurd-i386 > augustus | 3.3.2+dfsg-1 | i386, kfreebsd-i386 > bio-eagle |2.4.1-1 | i386, kfreebsd-i386 > delly |0.7.8-1 | hurd-i386, i386, kfreebsd-i386 > grabix |0.1.7-1 | hurd-i386, i386, kfreebsd-i386 > libhts-dev | 1.7-2 | hurd-i386, i386, kfreebsd-i386 >libhts2 | 1.7-2 | hurd-i386, i386, kfreebsd-i386 > libtabixpp-dev |1.0.0-4 | hurd-i386, i386, kfreebsd-i386 > libtabixpp0 |1.0.0-4 | hurd-i386, i386, kfreebsd-i386 > nanopolish | 0.10.2-1 | hurd-i386 > nanopolish | 0.10.2-1+b1 | i386, kfreebsd-i386 > qtltools | 1.1+dfsg-3 | kfreebsd-i386 > qtltools | 1.1+dfsg-3+b1 | hurd-i386, i386 > reapr | 1.0.18+dfsg-3+b1 | hurd-i386, kfreebsd-i386 > reapr | 1.0.18+dfsg-4 | i386 > sambamba |0.6.7-2 | i386 > samtools | 1.7-2 | kfreebsd-i386 > samtools | 1.7-2+b1 | hurd-i386, i386 > segemehl | 0.3-1 | hurd-i386, i386, kfreebsd-i386 >sga | 0.10.14-2 | hurd-i386, kfreebsd-i386 > stacks | 1.38-1 | hurd-i386 > stacks | 2.2+dfsg-1 | i386, kfreebsd-i386 > tabix | 1.7-2 | hurd-i386, i386, kfreebsd-i386 > > > > elbrus@respighi:~$ dak rm --no-action -R --suite=testing > --architecture=i386 htslib > W: -a/--architecture implies -p/--partial. > Will remove the following packages from testing: > > htslib | 1.9-10 | source > libhts-dev | 1.9-10 | i386 >libhts2 | 1.9-10 | i386 > tabix | 1.9-10 | i386 > > Maintainer: Debian Med Packaging Team > > > --- Reason --- > > -- > > Checking reverse dependencies... > # Broken Depends: > augustus: augustus > bio-tradis: bio-tradis > cyvcf2: python-cyvcf2 > python3-cyvcf2 > delly: delly > fastqtl: fastqtl > htslib: libhts-private-dev > nanopolish: nanopolish > qtltools: qtltools > samtools: samtools > segemehl: segemehl > > # Broken Build-Depends: > augustus: libhts-dev > bcftools: libhts-dev (>= 1.5-3) > tabix > bio-eagle: libhts-dev (>= 1.4) > crac: libhts-dev > cyvcf2: libhts-dev > delly: libhts-dev > fastqtl: libhts-dev > grabix: tabix > hilive: libhts-dev > libtabixpp: libhts-dev > nanopolish: libhts-dev > pbbam: libhts-dev > pbseqlib: libhts-dev > python-pysam: libhts-dev (>= 1.9) > tabix > qtltools: libhts-dev > reapr: libhts-dev (>= 1.3) >tabix > rna-star: libhts-dev > rsem: libhts-dev > samtools: libhts-dev (>= 1.9) > tabix (>= 1.0) > segemehl: libhts-dev > spades: libhts-dev > stacks: libhts-dev > trinityrnaseq: libhts-dev > unanimity: libhts-dev > > Dependency problem found. > -- http://fam-tille.de
Bug#927850: unblock: htslib/1.9-11
Hi Bug 914991 had this list removed. augustus | 3.3+dfsg-2 | hurd-i386 augustus | 3.3.2+dfsg-1 | i386, kfreebsd-i386 bio-eagle |2.4.1-1 | i386, kfreebsd-i386 delly |0.7.8-1 | hurd-i386, i386, kfreebsd-i386 grabix |0.1.7-1 | hurd-i386, i386, kfreebsd-i386 libhts-dev | 1.7-2 | hurd-i386, i386, kfreebsd-i386 libhts2 | 1.7-2 | hurd-i386, i386, kfreebsd-i386 libtabixpp-dev |1.0.0-4 | hurd-i386, i386, kfreebsd-i386 libtabixpp0 |1.0.0-4 | hurd-i386, i386, kfreebsd-i386 nanopolish | 0.10.2-1 | hurd-i386 nanopolish | 0.10.2-1+b1 | i386, kfreebsd-i386 qtltools | 1.1+dfsg-3 | kfreebsd-i386 qtltools | 1.1+dfsg-3+b1 | hurd-i386, i386 reapr | 1.0.18+dfsg-3+b1 | hurd-i386, kfreebsd-i386 reapr | 1.0.18+dfsg-4 | i386 sambamba |0.6.7-2 | i386 samtools | 1.7-2 | kfreebsd-i386 samtools | 1.7-2+b1 | hurd-i386, i386 segemehl | 0.3-1 | hurd-i386, i386, kfreebsd-i386 sga | 0.10.14-2 | hurd-i386, kfreebsd-i386 stacks | 1.38-1 | hurd-i386 stacks | 2.2+dfsg-1 | i386, kfreebsd-i386 tabix | 1.7-2 | hurd-i386, i386, kfreebsd-i386 elbrus@respighi:~$ dak rm --no-action -R --suite=testing --architecture=i386 htslib W: -a/--architecture implies -p/--partial. Will remove the following packages from testing: htslib | 1.9-10 | source libhts-dev | 1.9-10 | i386 libhts2 | 1.9-10 | i386 tabix | 1.9-10 | i386 Maintainer: Debian Med Packaging Team --- Reason --- -- Checking reverse dependencies... # Broken Depends: augustus: augustus bio-tradis: bio-tradis cyvcf2: python-cyvcf2 python3-cyvcf2 delly: delly fastqtl: fastqtl htslib: libhts-private-dev nanopolish: nanopolish qtltools: qtltools samtools: samtools segemehl: segemehl # Broken Build-Depends: augustus: libhts-dev bcftools: libhts-dev (>= 1.5-3) tabix bio-eagle: libhts-dev (>= 1.4) crac: libhts-dev cyvcf2: libhts-dev delly: libhts-dev fastqtl: libhts-dev grabix: tabix hilive: libhts-dev libtabixpp: libhts-dev nanopolish: libhts-dev pbbam: libhts-dev pbseqlib: libhts-dev python-pysam: libhts-dev (>= 1.9) tabix qtltools: libhts-dev reapr: libhts-dev (>= 1.3) tabix rna-star: libhts-dev rsem: libhts-dev samtools: libhts-dev (>= 1.9) tabix (>= 1.0) segemehl: libhts-dev spades: libhts-dev stacks: libhts-dev trinityrnaseq: libhts-dev unanimity: libhts-dev Dependency problem found. signature.asc Description: OpenPGP digital signature
Bug#927850: unblock: htslib/1.9-11
Hi Andreas, On 29-04-2019 20:41, Paul Gevers wrote: > On Fri, 26 Apr 2019 19:05:00 + Niels Thykier wrote: >> Andreas Tille: >>> Please unblock package htslib > >> Please include the bug id of that removal bug in a follow up and remove >> the moreinfo bug when the removal bug has been filed. > > That happened, so unblocked. Thanks. But unblocking isn't enough. There are more packages on i386 that need removal. ivodd already added a hint hint to get more information [1]. It seems at least augustus, delly, fastqtl, nanopolish, python-cyvcf2, python3-cyvcf2, qtltools, samtools, segemehl, bio-tradis, htslib-test, libhts-private-dev need something removed, but I think there is more (and ivodd hinted that this may be arch:all packages on i386). I'll try to get a more complete picture, but I would appreciate your effort as well. Could you please take care of the removal requests (maybe if the reverse dependent packages are removed as well, the list is complete)? Paul [1] https://release.debian.org/britney/update_output.txt signature.asc Description: OpenPGP digital signature
Bug#927850: unblock: htslib/1.9-11
Control: tags -1 moreinfo Andreas Tille: > Package: release.debian.org > Severity: normal > User: release.debian@packages.debian.org > Usertags: unblock > > Please unblock package htslib > > > [...] > > > unblock htslib/1.9-11 > > [...] Hi, Please file a bug against ftp.debian.org requesting the removal of htslib on i386. Without this removal, htslib cannot migrate to testing regardless of whether we unblock it or not. Please include the bug id of that removal bug in a follow up and remove the moreinfo bug when the removal bug has been filed. Thanks, ~Niels
Bug#927850: unblock: htslib/1.9-11
Dear Release Team, Please consider this unblock request, it is a minimal change and prevents nearly 70 packages from being removed from testing. Thanks!
Bug#927850: unblock: htslib/1.9-11
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
Please unblock package htslib
diff -Nru htslib-1.9/debian/changelog htslib-1.9/debian/changelog
--- htslib-1.9/debian/changelog>2019-01-16 14:23:22.0 +0100
+++ htslib-1.9/debian/changelog>2019-04-24 08:51:48.0 +0200
@@ -1,3 +1,11 @@
+htslib (1.9-11) unstable; urgency=medium
+
+ * Install README at request of upstream
+ * Stop building on any-i386
+Closes: #927353
+
+ -- Andreas Tille Wed, 24 Apr 2019 08:51:48 +0200
+
htslib (1.9-10) unstable; urgency=medium
.
* Bring the libdeflate, GCS, and S3 updates back to unstable.
diff -Nru htslib-1.9/debian/control htslib-1.9/debian/control
--- htslib-1.9/debian/control<->2019-01-16 14:22:40.0 +0100
+++ htslib-1.9/debian/control<->2019-04-24 08:51:48.0 +0200
@@ -19,7 +19,7 @@
Homepage: https://github.com/samtools/htslib
.
Package: libhts2
-Architecture: any
+Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x
alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
Multi-Arch: same
Section: libs
Depends: ${misc:Depends},
@@ -39,7 +39,7 @@
new index and then for the old if the new index is absent.
.
Package: libhts-dev
-Architecture: any
+Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x
alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
Multi-Arch: same
Section: libdevel
Depends: libhts2 (= ${binary:Version}),
@@ -99,7 +99,7 @@
This package contains test files and scripts for the HTSlib.
.
Package: tabix
-Architecture: any
+Architecture: any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x
alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
Depends: ${misc:Depends},
${shlibs:Depends}
Description: generic indexer for TAB-delimited genome position files
diff -Nru htslib-1.9/debian/libhts-dev.docs htslib-1.9/debian/libhts-dev.docs
--- htslib-1.9/debian/libhts-dev.docs<->2018-12-11 02:59:20.0 +0100
+++ htslib-1.9/debian/libhts-dev.docs<->2019-04-24 08:51:48.0 +0200
@@ -1 +1,2 @@
debian/README.test
+README*
\ No newline at end of file
unblock htslib/1.9-11
-- System Information:
Debian Release: 9.8
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.9.0-6-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8),
LANGUAGE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
