Re: GenomeTester4 (Was: (Bug#890993) primer3 FTBFS on big endian: test failure)
On Mon, 4 Jun 2018 at 16:42 Andreas Tille wrote: > > On Mon, Jun 04, 2018 at 01:37:13PM +0200, Liubov Chuprikova wrote: > > > Apropos ITP bug: Since I'm pretty lazy > > > > I do not believe in it! :-D > > So you do not believe it is lazy to make others work on autopkgtests > rather than doing it myself? :-P > You still didn't convince me since I can guess about how many tasks on you by looking at the activity panel :-P > > I have finally succeeded in reporting an ITP bug [1]! Not from the first > > try: some packages that had to be installed by default were absent on my > > system (my fault) (exim4 is one of them). It took time to understand the > > problem, as the reportbug was not providing any error message in this > case. > Oh, I wrote it wrong — it worked out actually after I reconfigured repotbug. Anyway, I hope that I could not confuse you with this exim4.. Its good in general to have a working setup for reportbug. BTW, you can > even copy the text of the bug report into GMail interface and send it to > cont...@bugs.debian.org. > I've now added you as Uploader to the package and also made the > changelog entry "yours" since this is what matches the ITP. > Thank you! I have also changed the ITP's "Owned by" field to Debian Med mailing list as it is recommended. Sorry for this mess! I think the package is ready for upload but you probably want to add a > test for the scripts. Please let me know if you consider the package > ready. > Yes, of course! With regards, Liubov > [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900752 >
Re: GenomeTester4 (Was: (Bug#890993) primer3 FTBFS on big endian: test failure)
Dear Liubov, On Mon, Jun 04, 2018 at 01:37:13PM +0200, Liubov Chuprikova wrote: > > Yes, and an ITP bug. > > > > Apropos ITP bug: Since I'm pretty lazy > > I do not believe in it! :-D So you do not believe it is lazy to make others work on autopkgtests rather than doing it myself? :-P > Thanks a lot for the instructions! > > I have finally succeeded in reporting an ITP bug [1]! Not from the first > try: some packages that had to be installed by default were absent on my > system (my fault) (exim4 is one of them). It took time to understand the > problem, as the reportbug was not providing any error message in this case. Its good in general to have a working setup for reportbug. BTW, you can even copy the text of the bug report into GMail interface and send it to cont...@bugs.debian.org. I've now added you as Uploader to the package and also made the changelog entry "yours" since this is what matches the ITP. I think the package is ready for upload but you probably want to add a test for the scripts. Please let me know if you consider the package ready. Thanks for your work on this Andreas. > [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900752 -- http://fam-tille.de
Processed: Bug#900752: ITP: genometester -- toolkit for performing set operations on k-mer lists
Processing commands for cont...@bugs.debian.org: > owner 900752 Debian Med Bug #900752 [wnpp] ITP: genometester -- toolkit for performing set operations on k-mer lists Owner changed from Liubov Chuprikova to Debian Med . > End of message, stopping processing here. Please contact me if you need assistance. -- 900752: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900752 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Re: GenomeTester4 (Was: (Bug#890993) primer3 FTBFS on big endian: test failure)
Dear Andreas, On Fri, 1 Jun 2018 at 14:00 Andreas Tille wrote: > > On Fri, Jun 01, 2018 at 11:49:09AM +0200, Liubov Chuprikova wrote: > > Has something remained to be done except for testsuite? > > Yes, and an ITP bug. > > Apropos ITP bug: Since I'm pretty lazy I do not believe in it! :-D > I wrote a small script which is > in the dh-r git repository[1]. So you do the following: Go to your > the repository with your prepared packaging stuff and call > > /itp_from_debian_dir > > which generates the output you need to paste. Then you do: > > > $ reportbug --no-check wnpp > > 1 (for ITP) > anything (package name comes later) > anything (package description comes later > first_line_of_script_output (the team that maintains the package > > Remove all text and copy everything else from the script after > the second empty line. (First line should be "Subject ...") > Thanks a lot for the instructions! I have finally succeeded in reporting an ITP bug [1]! Not from the first try: some packages that had to be installed by default were absent on my system (my fault) (exim4 is one of them). It took time to understand the problem, as the reportbug was not providing any error message in this case. With regards, Liubov [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900752
Re: It is not trivial to find the Debian Med Policy
Hi Liubov, On Mon, Jun 04, 2018 at 12:52:34PM +0200, Liubov Chuprikova wrote: > > Thanks a lot! Now it is much easier to found the Policy and not only it :-) :-) > > Thanks a lot for bringing this up. It is very appreciated. Way better > > than just leaving the page with keeping in mind that there is a lot of > > outdated stuff and say nothing. > > Thanks again! I did not want to be officious or something. In no way I considered your mail as officious. I really appreciated it as I wrote. > Of course, it is > not the only way to find the Policy as through Wiki pages, but the simplest > when surfing the internet. There were times when a web search easily uncovered it - but currently web searches are prefering alioth which is switched of. Hopefully the search engines will catch up soon. Kind regards Andreas. -- http://fam-tille.de
Re: It is not trivial to find the Debian Med Policy
Hi Andreas, On Fri, 1 Jun 2018 at 17:16 Andreas Tille wrote: > Hi Liubov, > > On Fri, Jun 01, 2018 at 03:00:20PM +0200, Liubov Chuprikova wrote: > > Updating links on Debian Med Wiki pages would be very useful, especially > > for navigating newbies like me :-) It is a page from which the Debian Med > > Policy can easily be found. At the moment almost all links refer to > > non-existing pages on Alioth. > > Grrr, Alioth was shut down yesterday - thus the redirect stops working. > I never ever subscribed to the theory that a Wiki is always up to date > since its a Wiki. In fact its as outdated as any other web technique. > Thus I took the chance to update old and **very** old stuff. Please > have another look whether it is now easier to find what you are looking > for. > Thanks a lot! Now it is much easier to found the Policy and not only it :-) > Thanks a lot for bringing this up. It is very appreciated. Way better > than just leaving the page with keeping in mind that there is a lot of > outdated stuff and say nothing. > Thanks again! I did not want to be officious or something. Of course, it is not the only way to find the Policy as through Wiki pages, but the simplest when surfing the internet. With regards, Liubov
Bug#873044: marked as done (ITP: gatb-core -- The Genome Analysis Toolbox with de-Bruijn graph)
Your message dated Mon, 04 Jun 2018 10:00:11 + with message-id and subject line Bug#873044: fixed in gatb-core 1.4.1+dfsg-1 has caused the Debian Bug report #873044, regarding ITP: gatb-core -- The Genome Analysis Toolbox with de-Bruijn graph to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 873044: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=873044 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: wnpp Severity: wishlist Owner: Debian Med * Package name : gatb-core Version : 1.3.0 * URL : https://github.com/GATB/gatb-core * License : GPL3 Programming Lang: C++ Description : The Genome Analysis Toolbox with de-Bruijn graph The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ The package is relevant to the field of NGS analysis and will be maintained by the Debian Med Team. --- End Message --- --- Begin Message --- Source: gatb-core Source-Version: 1.4.1+dfsg-1 We believe that the bug you reported is fixed in the latest version of gatb-core, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 873...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated gatb-core package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Mon, 14 May 2018 21:57:34 +0200 Source: gatb-core Binary: gatb-core libgatbcore0 libgatbcore-dev gatb-core-testdata Architecture: source amd64 all Version: 1.4.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: gatb-core - Genome Analysis Toolbox with de-Bruijn graph gatb-core-testdata - Genome Analysis Toolbox with de-Bruijn graph (test data) libgatbcore-dev - development library of the Genome Analysis Toolbox libgatbcore0 - dynamic library of the Genome Analysis Toolbox Closes: 873044 Changes: gatb-core (1.4.1+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #873044) Checksums-Sha1: 302fe252b6d2641ea9f8325d0edb6a450415779d 2312 gatb-core_1.4.1+dfsg-1.dsc 6b368683411cce9639189ad28340bba1303d38ab 2938536 gatb-core_1.4.1+dfsg.orig.tar.xz 77cdc38db1d580fd68a22ee1b4dbb7435b6c368f 19148 gatb-core_1.4.1+dfsg-1.debian.tar.xz 192e519af5a168f81e96d991ade0394b7dac1d49 72088136 gatb-core-dbgsym_1.4.1+dfsg-1_amd64.deb 648c968040a5e42cc0eaa37094e4533268aa0dff 1793972 gatb-core-testdata_1.4.1+dfsg-1_all.deb 6d71508fa9fa9ebefa981c450e81f04cfa61c99d 10186 gatb-core_1.4.1+dfsg-1_amd64.buildinfo 92e056a2a02d1e5083f7e18c1332164af98407b1 3443700 gatb-core_1.4.1+dfsg-1_amd64.deb 5ae54e8bbb077f290606bc049d372ce691641bc8 3671512 libgatbcore-dev_1.4.1+dfsg-1_amd64.deb a8a11b685ce9f3014fb54dcee6141632ab40ae64 40306604 libgatbcore0-dbgsym_1.4.1+dfsg-1_amd64.deb 1719aba827a02ebb24c22db31ee7bbe9a4acc8e9 1662520 libgatbcore0_1.4.1+dfsg-1_amd64.deb Checksums-Sha256: be91f132441d69533083189b36da2335c32caf9a9c3a9f1b977da6488aac0120 2312 gatb-core_1.4.1+dfsg-1.dsc 40ef74dcacf9a4bb0f55b06cd8cf41ac37cc6e45743880a4255047cbf2e64be2 2938536 gatb-core_1.4.1+dfsg.orig.tar.xz 345c057ca45eab7917da05434ebf29169fe85daea03ca5f7bddc3ac72acfc0e6 19148 gatb-core_1.4.1+dfsg-1.debian.tar.xz 6268f5c106cb3495708ce94ca5725ed26ab4e1b8cfb9c733bcdc4c1e310f74ca 72088136 gatb-core-dbgsym_1.4.1+dfsg-1_amd64.deb 79a3b73052420ad95d5fe3232ea213ddda143c36233d311a11ab9909fc285631 1793972 gatb-core-testdata_1.4.1+dfsg-1_all.deb 0248197e18bbbdb97adecffe478b9ddcbb18b49d41f3ba0d17cc435b574d4d40 10186 gatb-core_1.4.1+dfsg-1_amd64.buildinfo
