[med-svn] r12267 - trunk/packages/ncbi-blast+/trunk/debian/patches
Author: osallou Date: 2012-09-21 16:23:53 + (Fri, 21 Sep 2012) New Revision: 12267 Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps Log: remove fuzzy patch data Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps === --- trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps 2012-09-21 16:22:13 UTC (rev 12266) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/fix_lib_deps 2012-09-21 16:23:53 UTC (rev 12267) @@ -51,8 +51,8 @@ +DLL_LIB = seqmasks_io xobjread xobjutil xobjmgr seq xncbi --- a/c++/src/cgi/Makefile.cgi.lib +++ b/c++/src/cgi/Makefile.cgi.lib -@@ -8,6 +8,8 @@ - cgi_serial cgi_session cgi_exception cgiapp_cached cgi_entry_reader +@@ -9,6 +9,8 @@ + user_agent LIB = xcgi +DLL_LIB = xutil xncbi ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12266 - trunk/packages/ncbi-blast+/trunk/debian
Author: osallou Date: 2012-09-21 16:22:13 + (Fri, 21 Sep 2012) New Revision: 12266 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog Log: set new upstream release 2.2.27 Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog === --- trunk/packages/ncbi-blast+/trunk/debian/changelog 2012-09-21 16:21:40 UTC (rev 12265) +++ trunk/packages/ncbi-blast+/trunk/debian/changelog 2012-09-21 16:22:13 UTC (rev 12266) @@ -1,3 +1,9 @@ +ncbi-blast+ (2.2.27-1) unstable; urgency=low + + * New upstream release + + -- Olivier Sallou Fri, 21 Sep 2012 17:25:41 +0200 + ncbi-blast+ (2.2.26-3) unstable; urgency=low [ Aaron M. Ucko ] ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12265 - trunk/packages/ncbi-blast+/trunk/debian/patches
Author: osallou Date: 2012-09-21 16:21:40 + (Fri, 21 Sep 2012) New Revision: 12265 Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/hurd_fixes trunk/packages/ncbi-blast+/trunk/debian/patches/no_multiarch_rpath Log: update patches for new release Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/hurd_fixes === --- trunk/packages/ncbi-blast+/trunk/debian/patches/hurd_fixes 2012-09-21 16:21:15 UTC (rev 12264) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/hurd_fixes 2012-09-21 16:21:40 UTC (rev 12265) @@ -9,7 +9,7 @@ Last-Update: 2011-06-10 --- a/c++/src/build-system/configure +++ b/c++/src/build-system/configure -@@ -5688,7 +5688,7 @@ +@@ -5817,7 +5817,7 @@ solaris* ) CONF_f_runpath="-R" ;; @@ -20,7 +20,7 @@ linux*:ICC ) --- a/c++/src/build-system/configure.ac +++ b/c++/src/build-system/configure.ac -@@ -1496,7 +1496,7 @@ +@@ -1535,7 +1535,7 @@ solaris* ) CONF_f_runpath="-R" ;; @@ -31,14 +31,14 @@ linux*:ICC ) --- a/c++/src/connect/ncbi_socket_cxx.cpp +++ b/c++/src/connect/ncbi_socket_cxx.cpp -@@ -34,7 +34,7 @@ - #include +@@ -35,7 +35,7 @@ + #include "ncbi_assert.h"// no _ASSERT()s, keep clean from xncbi #include #include // for PATH_MAX --#if defined(NCBI_OS_MSWIN) && !defined(PATH_MAX) +-#if defined(NCBI_OS_MSWIN) && !defined(PATH_MAX) +#ifndef PATH_MAX # define PATH_MAX 512 // will actually use less than 32 chars - #endif + #endif // NCBI_OS_MSWIN && !PATH_MAX --- a/c++/src/connect/ext/ncbi_localnet.c +++ b/c++/src/connect/ext/ncbi_localnet.c Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/no_multiarch_rpath === --- trunk/packages/ncbi-blast+/trunk/debian/patches/no_multiarch_rpath 2012-09-21 16:21:15 UTC (rev 12264) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/no_multiarch_rpath 2012-09-21 16:21:40 UTC (rev 12265) @@ -10,7 +10,7 @@ Last-Update: 2011-08-28 --- a/c++/src/build-system/configure +++ b/c++/src/build-system/configure -@@ -5751,7 +5751,7 @@ +@@ -5880,7 +5880,7 @@ break ;; /* ) @@ -21,7 +21,7 @@ esac --- a/c++/src/build-system/configure.ac +++ b/c++/src/build-system/configure.ac -@@ -1558,7 +1558,7 @@ +@@ -1597,7 +1597,7 @@ break ;; /* ) ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12264 - trunk/packages/ncbi-blast+/trunk/debian
Author: osallou Date: 2012-09-21 16:21:15 + (Fri, 21 Sep 2012) New Revision: 12264 Modified: trunk/packages/ncbi-blast+/trunk/debian/rules Log: fix clean target Modified: trunk/packages/ncbi-blast+/trunk/debian/rules === --- trunk/packages/ncbi-blast+/trunk/debian/rules 2012-09-21 16:21:04 UTC (rev 12263) +++ trunk/packages/ncbi-blast+/trunk/debian/rules 2012-09-21 16:21:15 UTC (rev 12264) @@ -69,8 +69,10 @@ override_dh_clean: dh_clean -for x in c++/src/objects/*/*.files; do \ + if [ -d $$x ]; then \ (cd `dirname $$x` && ../../../BUILD/build/new_module.sh \ `basename $$x .files`.module purge_sources); \ + fi \ done rm -rf c++/BUILD c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12263 - trunk/packages/ncbi-blast+/trunk/debian/patches
Author: osallou Date: 2012-09-21 16:21:04 + (Fri, 21 Sep 2012) New Revision: 12263 Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/series Log: remove fixed bug patches Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/series === --- trunk/packages/ncbi-blast+/trunk/debian/patches/series 2012-09-21 15:58:05 UTC (rev 12262) +++ trunk/packages/ncbi-blast+/trunk/debian/patches/series 2012-09-21 16:21:04 UTC (rev 12263) @@ -2,6 +2,4 @@ legacy_rename_rpsblast fix_lib_deps no_multiarch_rpath -wrong_path_to_touch.patch -fix_gcc47_errors use_pie_for_apps ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12262 - in trunk/packages/circos/tags: . 0.62.1-1/debian 0.62.1-1/debian/patches
Author: osallou Date: 2012-09-21 15:58:05 + (Fri, 21 Sep 2012) New Revision: 12262 Added: trunk/packages/circos/tags/0.62.1-1/ trunk/packages/circos/tags/0.62.1-1/debian/changelog trunk/packages/circos/tags/0.62.1-1/debian/circos.examples trunk/packages/circos/tags/0.62.1-1/debian/patches/configpath_add_etc trunk/packages/circos/tags/0.62.1-1/debian/patches/fix_examples Removed: trunk/packages/circos/tags/0.62.1-1/debian/changelog trunk/packages/circos/tags/0.62.1-1/debian/circos.examples trunk/packages/circos/tags/0.62.1-1/debian/patches/configpath_add_etc trunk/packages/circos/tags/0.62.1-1/debian/patches/fix_examples Log: [svn-buildpackage] Tagging circos 0.62.1-1 Deleted: trunk/packages/circos/tags/0.62.1-1/debian/changelog === --- trunk/packages/circos/trunk/debian/changelog2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/packages/circos/tags/0.62.1-1/debian/changelog2012-09-21 15:58:05 UTC (rev 12262) @@ -1,47 +0,0 @@ -circos (0.62.1) UNRELEASED; urgency=low - - * New upstream release - - -- Olivier Sallou Fri, 21 Sep 2012 17:00:12 +0200 - -circos (0.61-3) unstable; urgency=low - - * debian/control: add missing dependency (Closes: #684977). - - -- Olivier Sallou Wed, 15 Aug 2012 12:46:11 +0200 - -circos (0.61-2) unstable; urgency=low - - [ Olivier Sallou ] - * debian/control: -- Update description (Closes: #682802). -- Rename otf-symbols-circos to fonts-circos-symbols to fit the Font - Packages Naming Policy. -- Move to Standards 3.9.3 - - -- Olivier Sallou Thu, 14 Jun 2012 13:46:15 +0200 - -circos (0.61-1) unstable; urgency=low - - [ Olivier Sallou ] - * New upstream release - - [ Charles Plessy ] - * renamed debian/upstream-metadata.yaml to debian/upstream - - [ Andreas Tille ] - * debian/upstream: enhanced citation information - - -- Olivier Sallou Thu, 14 Jun 2012 12:56:33 +0200 - -circos (0.55-2) unstable; urgency=low - - * Add pre-depends on dpkg to support xz compression (required for Ubuntu) - - -- Olivier Sallou Wed, 19 Oct 2011 14:16:18 +0200 - -circos (0.55-1) unstable; urgency=low - - * First debian import (Closes: #632174) - - -- Olivier Sallou Wed, 29 Jun 2011 12:04:57 +0200 Copied: trunk/packages/circos/tags/0.62.1-1/debian/changelog (from rev 12260, trunk/packages/circos/trunk/debian/changelog) === --- trunk/packages/circos/tags/0.62.1-1/debian/changelog (rev 0) +++ trunk/packages/circos/tags/0.62.1-1/debian/changelog2012-09-21 15:58:05 UTC (rev 12262) @@ -0,0 +1,47 @@ +circos (0.62.1-1) unstable; urgency=low + + * New upstream release + + -- Olivier Sallou Fri, 21 Sep 2012 17:00:12 +0200 + +circos (0.61-3) unstable; urgency=low + + * debian/control: add missing dependency (Closes: #684977). + + -- Olivier Sallou Wed, 15 Aug 2012 12:46:11 +0200 + +circos (0.61-2) unstable; urgency=low + + [ Olivier Sallou ] + * debian/control: +- Update description (Closes: #682802). +- Rename otf-symbols-circos to fonts-circos-symbols to fit the Font + Packages Naming Policy. +- Move to Standards 3.9.3 + + -- Olivier Sallou Thu, 14 Jun 2012 13:46:15 +0200 + +circos (0.61-1) unstable; urgency=low + + [ Olivier Sallou ] + * New upstream release + + [ Charles Plessy ] + * renamed debian/upstream-metadata.yaml to debian/upstream + + [ Andreas Tille ] + * debian/upstream: enhanced citation information + + -- Olivier Sallou Thu, 14 Jun 2012 12:56:33 +0200 + +circos (0.55-2) unstable; urgency=low + + * Add pre-depends on dpkg to support xz compression (required for Ubuntu) + + -- Olivier Sallou Wed, 19 Oct 2011 14:16:18 +0200 + +circos (0.55-1) unstable; urgency=low + + * First debian import (Closes: #632174) + + -- Olivier Sallou Wed, 29 Jun 2011 12:04:57 +0200 Deleted: trunk/packages/circos/tags/0.62.1-1/debian/circos.examples === --- trunk/packages/circos/trunk/debian/circos.examples 2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/packages/circos/tags/0.62.1-1/debian/circos.examples 2012-09-21 15:58:05 UTC (rev 12262) @@ -1 +0,0 @@ -example/* Copied: trunk/packages/circos/tags/0.62.1-1/debian/circos.examples (from rev 12261, trunk/packages/circos/trunk/debian/circos.examples) === --- trunk/packages/circos/tags/0.62.1-1/debian/circos.examples (rev 0) +++ trunk/packages/circos/tags/0.62.1-1/debian/circos.examples 2012-09-21 15:58:05 UTC (rev 12262) @@ -0,0 +1,2 @@ +example/* +data Deleted: trunk/packages/circos/tags/0.62.1-1/debian/patches/configpath_add_etc === --- trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/pa
[med-svn] r12261 - trunk/packages/circos/trunk/debian
Author: osallou Date: 2012-09-21 15:54:38 + (Fri, 21 Sep 2012) New Revision: 12261 Modified: trunk/packages/circos/trunk/debian/circos.examples Log: add missing example data Modified: trunk/packages/circos/trunk/debian/circos.examples === --- trunk/packages/circos/trunk/debian/circos.examples 2012-09-21 15:43:24 UTC (rev 12260) +++ trunk/packages/circos/trunk/debian/circos.examples 2012-09-21 15:54:38 UTC (rev 12261) @@ -1 +1,2 @@ example/* +data ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12260 - trunk/packages/circos/trunk/debian
Author: osallou Date: 2012-09-21 15:43:24 + (Fri, 21 Sep 2012) New Revision: 12260 Modified: trunk/packages/circos/trunk/debian/changelog Log: fix release Modified: trunk/packages/circos/trunk/debian/changelog === --- trunk/packages/circos/trunk/debian/changelog2012-09-21 15:21:29 UTC (rev 12259) +++ trunk/packages/circos/trunk/debian/changelog2012-09-21 15:43:24 UTC (rev 12260) @@ -1,4 +1,4 @@ -circos (0.62.1) unstable; urgency=low +circos (0.62.1-1) unstable; urgency=low * New upstream release ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12259 - in trunk/packages/circos/trunk/debian: . patches
Author: osallou Date: 2012-09-21 15:21:29 + (Fri, 21 Sep 2012) New Revision: 12259 Modified: trunk/packages/circos/trunk/debian/changelog trunk/packages/circos/trunk/debian/patches/configpath_add_etc trunk/packages/circos/trunk/debian/patches/fix_examples Log: fix patches for new upstream release Modified: trunk/packages/circos/trunk/debian/changelog === --- trunk/packages/circos/trunk/debian/changelog2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/packages/circos/trunk/debian/changelog2012-09-21 15:21:29 UTC (rev 12259) @@ -1,4 +1,4 @@ -circos (0.62.1) UNRELEASED; urgency=low +circos (0.62.1) unstable; urgency=low * New upstream release Modified: trunk/packages/circos/trunk/debian/patches/configpath_add_etc === --- trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2012-09-21 15:21:29 UTC (rev 12259) @@ -1,27 +1,28 @@ Description: Add Debian directories in search path Author: Olivier Sallou -Last-Update: 2011-08-01 +Last-Update: 2012-09-21 +Forwarded: not-needed --- a/lib/Circos/Configuration.pm +++ b/lib/Circos/Configuration.pm -@@ -569,6 +569,7 @@ +@@ -591,6 +591,7 @@ } my @configpath = ( -+"/etc/circos", - dirname($file), - dirname($file)."/etc", - "$FindBin::RealBin/etc", ++ "/etc/circos", + dirname($file), + dirname($file)."/etc", + "$FindBin::RealBin/etc", --- a/lib/Circos/Utils.pm +++ b/lib/Circos/Utils.pm -@@ -429,7 +429,7 @@ - %params = @_; - } - # look for the file in various directories --my @dir_1 = (getcwd,$FindBin::RealBin); -+my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos"); - my @dir_2 = qw(. .. ../..); - my @dir_3 = qw(. etc data); +@@ -430,7 +430,7 @@ + } + # look for the file in various directories +- my @dir_1 = (getcwd,$FindBin::RealBin); ++ my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos"); + my @dir_2 = qw(. .. ../.. ../../..); + my @dir_3 = qw(. etc data); + --- a/etc/makehuesteps +++ b/etc/makehuesteps @@ -1,4 +1,4 @@ Modified: trunk/packages/circos/trunk/debian/patches/fix_examples === --- trunk/packages/circos/trunk/debian/patches/fix_examples 2012-09-21 15:00:45 UTC (rev 12258) +++ trunk/packages/circos/trunk/debian/patches/fix_examples 2012-09-21 15:21:29 UTC (rev 12259) @@ -4,10 +4,11 @@ in /etc/circos. This path is already added to search path. Author: Olivier Sallou -Last-Updated: 14/06/12 +Last-Updated: 2012-09-21 +Forwarded: not-needed --- a/example/etc/circos.conf +++ b/example/etc/circos.conf -@@ -246,16 +246,16 @@ +@@ -248,16 +248,16 @@ <> @@ -35,6 +36,6 @@ @@ -1,4 +1,4 @@ #!/bin/bash --../bin/circos -conf etc/circos.conf -debug_group summary,timer,textplace > run.out -+circos -conf etc/circos.conf -debug_group summary,timer,textplace > run.out +-../bin/circos -conf etc/circos.conf -debug_group summary,timer > run.out ++circos -conf etc/circos.conf -debug_group summary,timer > run.out ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12258 - trunk/packages/circos/trunk/debian
Author: osallou Date: 2012-09-21 15:00:45 + (Fri, 21 Sep 2012) New Revision: 12258 Modified: trunk/packages/circos/trunk/debian/changelog trunk/packages/circos/trunk/debian/watch Log: new upstream release 0.62.1 Modified: trunk/packages/circos/trunk/debian/changelog === --- trunk/packages/circos/trunk/debian/changelog2012-09-21 07:18:21 UTC (rev 12257) +++ trunk/packages/circos/trunk/debian/changelog2012-09-21 15:00:45 UTC (rev 12258) @@ -1,3 +1,9 @@ +circos (0.62.1) UNRELEASED; urgency=low + + * New upstream release + + -- Olivier Sallou Fri, 21 Sep 2012 17:00:12 +0200 + circos (0.61-3) unstable; urgency=low * debian/control: add missing dependency (Closes: #684977). Modified: trunk/packages/circos/trunk/debian/watch === --- trunk/packages/circos/trunk/debian/watch2012-09-21 07:18:21 UTC (rev 12257) +++ trunk/packages/circos/trunk/debian/watch2012-09-21 15:00:45 UTC (rev 12258) @@ -1,2 +1,2 @@ version=3 -http://circos.ca/software/download .*/distribution/circos-([-.\d]*)\.tgz +opts=uversionmangle=s/\-/\./ http://circos.ca/software/download .*/distribution/circos-([-.\d]*)\.tgz ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools annotated tag, debian/1.77-1, created. debian/1.77-1
The annotated tag, debian/1.77-1 has been created at a2092773a7a167250d8ee7ebc78a0a66f0735f2a (tag) tagging 4b0e1925a72ce0553288b616f50f40de78fb3247 (commit) replaces debian/1.76-1 tagged by Olivier Sallou on Fri Sep 21 16:51:41 2012 +0200 - Shortlog Debian release 1.77-1 Olivier Sallou (4): Imported Upstream version 1.77 Merge commit 'upstream/1.77' new upstream release 1.77 upload new release --- -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools branch, master, updated. debian/1.76-1-5-g4b0e192
The following commit has been merged in the master branch: commit 4b0e1925a72ce0553288b616f50f40de78fb3247 Author: Olivier Sallou Date: Fri Sep 21 16:47:50 2012 +0200 upload new release diff --git a/debian/changelog b/debian/changelog index beb57de..2ae019c 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,4 @@ -picard-tools (1.77-1) UNRELEASED; urgency=low +picard-tools (1.77-1) unstable; urgency=low * New upstream release -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools annotated tag, upstream/1.77, created. upstream/1.77
The annotated tag, upstream/1.77 has been created at 25de0970094601815e57d3960d6994c6653790f9 (tag) tagging f2861dfb8c0d28b06816527cb479451349199827 (commit) replaces upstream/1.76 tagged by Olivier Sallou on Fri Sep 21 16:40:56 2012 +0200 - Shortlog Upstream version 1.77 Olivier Sallou (1): Imported Upstream version 1.77 --- -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools branch, pristine-tar, updated. 00f600b3ea0b5b3eba774ad4c45f9f5d08da88cd
The following commit has been merged in the pristine-tar branch: commit 00f600b3ea0b5b3eba774ad4c45f9f5d08da88cd Author: Olivier Sallou Date: Fri Sep 21 16:40:55 2012 +0200 pristine-tar data for picard-tools_1.77.orig.tar.bz2 diff --git a/picard-tools_1.77.orig.tar.bz2.delta b/picard-tools_1.77.orig.tar.bz2.delta new file mode 100644 index 000..93fc2d0 Binary files /dev/null and b/picard-tools_1.77.orig.tar.bz2.delta differ diff --git a/picard-tools_1.77.orig.tar.bz2.id b/picard-tools_1.77.orig.tar.bz2.id new file mode 100644 index 000..ccf5085 --- /dev/null +++ b/picard-tools_1.77.orig.tar.bz2.id @@ -0,0 +1 @@ +9b146d3257343ec109a4481c608f2fa5471a5294 -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools branch, master, updated. debian/1.76-1-4-g591918c
The following commit has been merged in the master branch: commit 591918cfa634261657a1d2c0b817fa4f2108d315 Author: Olivier Sallou Date: Fri Sep 21 16:41:45 2012 +0200 new upstream release 1.77 diff --git a/debian/changelog b/debian/changelog index ef01700..beb57de 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +picard-tools (1.77-1) UNRELEASED; urgency=low + + * New upstream release + + -- Olivier Sallou Fri, 21 Sep 2012 16:41:23 +0200 + picard-tools (1.76-1) unstable; urgency=low * New upstream release -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] [SCM] picard-tools branch, master, updated. debian/1.76-1-4-g591918c
The following commit has been merged in the master branch: commit 26697431bc2bf20fb5921c1b75f6fe399c0423ce Merge: ea721abe88a82d45617c23383f2fe7c6458a9376 f2861dfb8c0d28b06816527cb479451349199827 Author: Olivier Sallou Date: Fri Sep 21 16:40:56 2012 +0200 Merge commit 'upstream/1.77' -- manipulate SAM and BAM files ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
[med-svn] r12257 - trunk/packages/pixelmed/trunk/debian
Author: malat Date: 2012-09-21 07:18:21 + (Fri, 21 Sep 2012) New Revision: 12257 Modified: trunk/packages/pixelmed/trunk/debian/README.Debian Log: Update README Modified: trunk/packages/pixelmed/trunk/debian/README.Debian === --- trunk/packages/pixelmed/trunk/debian/README.Debian 2012-09-21 06:44:28 UTC (rev 12256) +++ trunk/packages/pixelmed/trunk/debian/README.Debian 2012-09-21 07:18:21 UTC (rev 12257) @@ -1,6 +1,21 @@ +In order to display compressed JPEG-LS & JPEG-Lossless you will to install +(non-free): + +$ sudo apt-get install libjai-imageio-core-java + +On non-intel platform you should be able to install this package (--force), in +order to get the JPEG 2000 Java implementation (libclib_jiio.so is only really +required for JPEG-LS & JPEG-Lossless) + +See here for demo files: + +ftp://medical.nema.org/MEDICAL/Dicom/DataSets/WG04 + +-- + In order to display chinese fonts you will need to install: -sudo apt-get install fonts-arphic-ukai fonts-arphic-uming +$ sudo apt-get install fonts-arphic-ukai fonts-arphic-uming See here for demo files: ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
