Re: Summary of scientific research on Debian (was: DD age histogram)

2011-08-17 Thread Stefano Zacchiroli
On Wed, Aug 10, 2011 at 12:15:46PM -0500, Gunnar Wolf wrote:
 Well, if you are the author, even though the final print-copy files
 are not freely distributable (as they include layout that's usually
 property of the publishing journal/editorial), you can always decide
 to share publicly the final version you sent for them to form. Having
 that, together with full publication information, should be enough.

Indeed, you (as an author) often have the right to redistribute the so
called preprint. But even in that case, you often are constrained about
the origin of your redistribution. My experience with major computer
science publishers (Sprinter, Elsevier, etc.) is that they grant you the
right to redistribute preprints only *from your homepage*. Letting aside
DFSG-freeness, such clauses make it difficult to form an archive of
Debian-related literature that can be hosted on Debian infrastructure.

Nonetheless, there is value also in just collecting a bibliography of
DOI-s or of similar identifiers.  For scholars, that is useful as a
research starting point; for Debian, that is useful in showing the
importance of Debian in various sciences, as a very interesting subject
of study.

Cheers.
-- 
Stefano Zacchiroli -o- PhD in Computer Science \ PostDoc @ Univ. Paris 7
zack@{upsilon.cc,pps.jussieu.fr,debian.org} -- http://upsilon.cc/zack/
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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-08-10 Thread Gunnar Wolf
Paul Wise dijo [Thu, Jul 14, 2011 at 04:47:52PM +0200]:
  What about collecting the actual document and attaching them to this
  page (license permitting), or a DOI link? What about merging the
  separate publication list into this page (actually there was a
  discussion on a canonical reference file for Debian related work on
  debian-science some time ago)?
 
 I doubt many of them have an acceptable license for distributing,
 links would be great.
 
 Merging seems reasonable.

Well, if you are the author, even though the final print-copy files
are not freely distributable (as they include layout that's usually
property of the publishing journal/editorial), you can always decide
to share publicly the final version you sent for them to form. Having
that, together with full publication information, should be enough.

Also, thankfully, every day there are more Open Access-friendly
academic publications. FWIW, my University (not a particularly liberal
one, and a very large one) is pushing all of its Institutes and
Faculties to set up public repositories with Open Access (yes, not
necessarily DFSG-free, but a huge difference from the completely
closed model used until recently).

  The publication itself can be considered feedback -- it is just that you
  need to know that it is there in order to be able to read it in order to
  form a personal opinion.
 
 Yeah, especially if the research is presented at DebConf. That said it
 is one thing to publish some research and present it at DebConf but
 entirely another to use those conclusions to actively push Debian in
 new/better directions.

Please keep in mind that if you presented a preliminary work at a
previous DebConf, you can still edit the event and attach the
published (or updated) material.


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-08-10 Thread Paul Wise
On Wed, Aug 10, 2011 at 7:15 PM, Gunnar Wolf wrote:

 Well, if you are the author, even though the final print-copy files
 are not freely distributable (as they include layout that's usually
 property of the publishing journal/editorial), you can always decide
 to share publicly the final version you sent for them to form. Having
 that, together with full publication information, should be enough.

I guess that doesn't work when the University owns the copyright.

 Also, thankfully, every day there are more Open Access-friendly
 academic publications. FWIW, my University (not a particularly liberal
 one, and a very large one) is pushing all of its Institutes and
 Faculties to set up public repositories with Open Access (yes, not
 necessarily DFSG-free, but a huge difference from the completely
 closed model used until recently).

That is extremely good news.

 Please keep in mind that if you presented a preliminary work at a
 previous DebConf, you can still edit the event and attach the
 published (or updated) material.

I was thinking of more proactive work pushing Debian in new ways based
on the conclusions of the study, rather than just communicating the
results/conclusions.

-- 
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pabs

http://wiki.debian.org/PaulWise


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-19 Thread Stefano Zacchiroli
On Thu, Jul 14, 2011 at 03:45:32PM +0200, Paul Wise wrote:
  That made me wonder whether Debian collects references to the research
  done on it somehow somewhere.
 
 There is one mentioned here:
 http://wiki.debian.org/Statistics#Scientific_papers_with_statistics_about_Debian
 
 And some more here:
 http://wiki.debian.org/research

Several of the work done in the research group I'm a member of in Paris
have directly had Debian packages and their relationships as a subject
of study, or even proposed solutions for Debian Quality Assurance. A
couple of publication listings are at:

- http://upsilon.cc/~zack/research/publications/
- http://www.mancoosi.org/papers/

Note that not all of the papers you'll find there are Debian related, so
someone needs to do some cherry picking. For the papers of which I'm
co-author, I've just done so and this is a list of the corresponding
DOIs or preprint:

- http://upsilon.cc/~zack/research/publications/cbse2011-mpm.pdf
  (DOI not available yet)
- http://upsilon.cc/~zack/research/publications/studia11-dh-ocaml.pdf
  (DOI not available yet)
- 10.1016/j.scico.2010.11.001
- 10.1007/978-3-642-15579-6_40
- 10.1109/MSR.2010.5463277
- 10.1109/ESEM.2009.5316017
- 10.1007/978-3-642-14819-4_19

I haven't done the same for papers I'm not co-author of, because I don't
have the DOIs handy. For all papers above you can find preprints at the
first two links I've mentioned in this mail.

 I'd encourage you to contribute to the research wiki page if you find
 any new/old research.  The debian-publicity folks can help with
 publicising any new research that comes up.

Please do, I think it's very valuable. At the same time, as a scholar in
this field, I don't think it's feasible to imagine paper (co-)authors to
actually maintain those pages. I've myself to already maintain that in
several places (e.g. for periodic review of my work by the university
and/or state) and I won't be particularly willing to do it in yet
another place. You might want to encourage it a bit more by providing
some automated submission interface (which of course will be SPAM prone
...). To be honest, it seems to me that the only way this could be kept
current is if someone other than the authors will step up and maintain a
Debian Research Bibliography from within Debian.

We might also want to find an interesting place where to link this from
www.d.o, as it might increase the visibility.

As a last data point, several DebConf-s ago (= 2007, at least),
Benjamin Mako Hill held a BoF about research done on and around
Debian. It was from all point of views (social sciences, computer
science, etc.), but I'm pretty sure the BoF was based on some
bibliography of his. You might want to check that with him.

 Personally I feel that research without feedback to Debian is
 suboptimal, we should be able to learn from studies of Debian and
 change in positive ways as a result.

Yes, but it should go both ways. I've been doing myself research which
has an impact on Debian (the EDOS toolchain, apt-cudf now in
experimental, etc.) and I can assure you that the overhead for
scientists to have such an impact is enormous when compared to the usual
scholar work-flow. I cannot imagine scholars with low degree of
involvement in Debian (arguably, my own involvement in Debian is quite
high) managing to have an impact on us. The entry barrier is very high
for them. So if we, as in Debian, want to benefit from research
outcomes, it should *also* be us reaching out to scholars and try to
integrate their work.

Cheers.
-- 
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zack@{upsilon.cc,pps.jussieu.fr,debian.org} -- http://upsilon.cc/zack/
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ti resta John Fante -- V. Capossela ...| ..: |.. -- C. Adams


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-19 Thread Stefano Zacchiroli
On Thu, Jul 14, 2011 at 10:22:37AM -0400, Michael Hanke wrote:
 What about collecting the actual document and attaching them to this
 page (license permitting), or a DOI link?

DOI, both with or without link, would be very useful.

Given the (sad) situation of research publication licenses, I doubt we
can put on the wiki many publication PDFs, including preprints. As an
author, most of the agreements I have to sign with publishers allows me
to publish preprints on my homepage, but not to redistribute them
elsewhere; and I can hardly make the point that a wiki page on
wiki.debian.org collecting papers from many scholars is my
homepage... (This is so ignoring the fact that I generally don't care
about those restrictions and I publish on my homepage all preprints as
some sort of resistance to the system; of course this is something I
could do on my homepage but that I cannot propose for the Debian wiki.)

What we could do is adding links to PDF available on entities like
CiteSeer, which are borderline legal in many cases, but at least are
external to the Debian wiki.

 What about merging the separate publication list into this page
 (actually there was a discussion on a canonical reference file for
 Debian related work on debian-science some time ago)?
 
 Note, these question are meant like: Is there consensus on doing it this
 way, not that somebody else should do it ;-)

I think that if you are willing to do that yourself, the consensus will
be vacuously there :)

Thanks for raising this topic,
Cheers.
-- 
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zack@{upsilon.cc,pps.jussieu.fr,debian.org} -- http://upsilon.cc/zack/
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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-19 Thread Michael Hanke
On Tue, Jul 19, 2011 at 10:27:58AM +0200, Stefano Zacchiroli wrote:
 - 10.1016/j.scico.2010.11.001
 - 10.1007/978-3-642-15579-6_40
 - 10.1109/MSR.2010.5463277
 - 10.1109/ESEM.2009.5316017
 - 10.1007/978-3-642-14819-4_19

I have added pages for the above. Should all be visible from

  http://wiki.debian.org/CategoryPublication

 At the same time, as a scholar in this field, I don't think it's
 feasible to imagine paper (co-)authors to actually maintain those
 pages. I've myself to already maintain that in several places (e.g.
 for periodic review of my work by the university and/or state) and I
 won't be particularly willing to do it in yet another place. You might
 want to encourage it a bit more by providing some automated submission
 interface (which of course will be SPAM prone ...). To be honest, it
 seems to me that the only way this could be kept current is if someone
 other than the authors will step up and maintain a Debian Research
 Bibliography from within Debian.

If we are talking about abstract+DOI+citation I don't see much of an
issue with becoming outdated. it is mostly a matter of initial
submission -- it took me about a minute to paste the relevant bits into
the template. I imagine it would need A LOT of papers to justify the time
that would need to go into an automated submission machinery.

I'd assume that people who are interested enough to communicate their
research to Debian would also be able to invest this time -- as long as
they can easily find where and how to place this information. I have added
a snippet with instructions to the above page.

Of course this is not saying that making it even easier wouldn't be a
good thing.

 We might also want to find an interesting place where to link this from
 www.d.o, as it might increase the visibility.

Yes please!

 As a last data point, several DebConf-s ago (= 2007, at least),
 Benjamin Mako Hill held a BoF about research done on and around
 Debian. It was from all point of views (social sciences, computer
 science, etc.), but I'm pretty sure the BoF was based on some
 bibliography of his. You might want to check that with him.

Thanks for the note.

Michael

-- 
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http://mih.voxindeserto.de


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Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Michael Hanke
Hi,

On Wed, Jul 13, 2011 at 04:56:16PM +0200, Stefano Zacchiroli wrote:
 That's great, thanks for doing and sharing it. I agree with you that
 it's way more than just a fun hack, but it can be a useful tool to
 understand how the DD community evolves and related figures (e.g. the
 correlation among age periods and the amount of volunteer time can have
 a lot to say on able people power in Debian).

That made me wonder whether Debian collects references to the research
done on it somehow somewhere. I know that some DDs have graduated
writing thesis on several aspects of Debian, but I couldn't find a place
on Debian's websites that documents this.

Google scholar offers an initial guess:

  http://scholar.google.com/scholar?q=debianum=1ie=UTF-8sa=Nhl=entab=ws

but it mixes howto-style documents with actual studies on Debian, like
this one:

  http://portal.acm.org/citation.cfm?id=1247454

I find the social and technical dynamics of Debian fascinating -- I'm
sure I'm not alone. By exposing prior research on the project more
prominently we might be able to encourage further research and maybe
learn something from it.

Michael

-- 
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http://mih.voxindeserto.de


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Paul Wise
On Thu, Jul 14, 2011 at 3:37 PM, Michael Hanke m...@debian.org wrote:

 That made me wonder whether Debian collects references to the research
 done on it somehow somewhere.

There is one mentioned here:

http://wiki.debian.org/Statistics#Scientific_papers_with_statistics_about_Debian

And some more here:

http://wiki.debian.org/research

 I find the social and technical dynamics of Debian fascinating -- I'm
 sure I'm not alone. By exposing prior research on the project more
 prominently we might be able to encourage further research and maybe
 learn something from it.

I'd encourage you to contribute to the research wiki page if you find
any new/old research.

The debian-publicity folks can help with publicising any new research
that comes up.

It might be interesting to link to these existing studies from
debian-history or debian-timeline, you might like to submit patches.

Personally I feel that research without feedback to Debian is
suboptimal, we should be able to learn from studies of Debian and
change in positive ways as a result.

-- 
bye,
pabs

http://wiki.debian.org/PaulWise


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Michael Hanke
On Thu, Jul 14, 2011 at 03:45:32PM +0200, Paul Wise wrote:
 There is one mentioned here:
 
 http://wiki.debian.org/Statistics#Scientific_papers_with_statistics_about_Debian
 
 And some more here:
 
 http://wiki.debian.org/research

Thanks for the pointers!

  I find the social and technical dynamics of Debian fascinating -- I'm
  sure I'm not alone. By exposing prior research on the project more
  prominently we might be able to encourage further research and maybe
  learn something from it.
 
 I'd encourage you to contribute to the research wiki page if you find
 any new/old research.

I will. However, I wonder if the current setup of this page is optimal.
The page doesn't offer the actual papers -- only links to the people who
wrote them. Not all the links actually point to something meaningful.
Moreover, such links are often doomed to become invalid -- simply by the
way science careers work.

What about collecting the actual document and attaching them to this
page (license permitting), or a DOI link? What about merging the
separate publication list into this page (actually there was a
discussion on a canonical reference file for Debian related work on
debian-science some time ago)?

Note, these question are meant like: Is there consensus on doing it this
way, not that somebody else should do it ;-)

 It might be interesting to link to these existing studies from
 debian-history or debian-timeline, you might like to submit patches.

Definitely! It didn't even know about debian-history.

 Personally I feel that research without feedback to Debian is
 suboptimal, we should be able to learn from studies of Debian and
 change in positive ways as a result.

The publication itself can be considered feedback -- it is just that you
need to know that it is there in order to be able to read it in order to
form a personal opinion.


-- 
Michael Hanke
http://mih.voxindeserto.de


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Paul Wise
On Thu, Jul 14, 2011 at 4:22 PM, Michael Hanke m...@debian.org wrote:

 I will. However, I wonder if the current setup of this page is optimal.
 The page doesn't offer the actual papers -- only links to the people who
 wrote them. Not all the links actually point to something meaningful.
 Moreover, such links are often doomed to become invalid -- simply by the
 way science careers work.

It definitely isn't optimal, it is a wiki though so improving it is easy ;)

 What about collecting the actual document and attaching them to this
 page (license permitting), or a DOI link? What about merging the
 separate publication list into this page (actually there was a
 discussion on a canonical reference file for Debian related work on
 debian-science some time ago)?

I doubt many of them have an acceptable license for distributing,
links would be great.

Merging seems reasonable.

 The publication itself can be considered feedback -- it is just that you
 need to know that it is there in order to be able to read it in order to
 form a personal opinion.

Yeah, especially if the research is presented at DebConf. That said it
is one thing to publish some research and present it at DebConf but
entirely another to use those conclusions to actively push Debian in
new/better directions.

-- 
bye,
pabs

http://wiki.debian.org/PaulWise


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Yaroslav Halchenko
and may be finally to push out our 
http://anonscm.debian.org/gitweb/?p=pkg-exppsy/debian-bibliography.git

with

bib/debian.bib

summarizing valuable references to be readily available on debian
systems for the citations in the appers.


Cheers,
Yarik

On Thu, 14 Jul 2011, Paul Wise wrote:

  The publication itself can be considered feedback -- it is just that you
  need to know that it is there in order to be able to read it in order to
  form a personal opinion.

 Yeah, especially if the research is presented at DebConf. That said it
 is one thing to publish some research and present it at DebConf but
 entirely another to use those conclusions to actively push Debian in
 new/better directions.
-- 
=--=
Keep in touch www.onerussian.com
Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic


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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Michael Hanke
On Thu, Jul 14, 2011 at 04:47:52PM +0200, Paul Wise wrote:
  I will. However, I wonder if the current setup of this page is optimal.
  The page doesn't offer the actual papers -- only links to the people who
  wrote them. Not all the links actually point to something meaningful.
  Moreover, such links are often doomed to become invalid -- simply by the
  way science careers work.
 
 It definitely isn't optimal, it is a wiki though so improving it is easy ;)

Indeed. Here is what I'm thinking about doing:

1. Create CategoryPublication

   We might want to further categorize publications whenever the number
   gets large enough to justify that work.

2. Create PublicationTemplate

   That has an outline of all the information we'd like to have per
   publication: title, authors, abstract, DOI, link to document at publisher
   website, potential document attachment, BIB snippet.

3. Create actual template instances for some publications

4. Modify http://wiki.debian.org/research to point to CategoryPublication

5. Contact authors of known publication asking them to create pages for their
   work -- potentially attaching preprint-versions of their papers that
   may not be affected by licensing issues.

Comments?

Michael

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Re: Summary of scientific research on Debian (was: DD age histogram)

2011-07-14 Thread Michael Hanke
On Thu, Jul 14, 2011 at 11:57:31AM -0400, Michael Hanke wrote:
 1. Create CategoryPublication
 
We might want to further categorize publications whenever the number
gets large enough to justify that work.

Done.

 2. Create PublicationTemplate
 
That has an outline of all the information we'd like to have per
publication: title, authors, abstract, DOI, link to document at publisher
website, potential document attachment, BIB snippet.
 
 3. Create actual template instances for some publications

While trying to craft (2) I approached (3). Here is a demo:

  http://wiki.debian.org/NeuroDebian/NeuroscienceRunsLinux

I'd be glad to get feeback on this one. The purpose of the BIB snippet
is to be able to harvest this information from the wiki and generate a
Debian.bib automatically.

Michael

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