Bug#952414: buster-pu: package ncbi-blast+/2.8.1-1+deb10u1
Package: release.debian.org Severity: normal Tags: buster User: release.debian@packages.debian.org Usertags: pu Per #951280, x86 builds of ncbi-blast+ accidentally wound up requiring SSE 4.2, breaking execution on older processors. I've prepared an update (patch attached, or at [SALSA]) adding a configure flag that eliminates this inappropriate requirement. (The flag is a no-op on other architectures, and as such safe to supply unconditionally.) May I please proceed with an upload targeting buster? Thanks! [SALSA] https://salsa.debian.org/med-team/ncbi-blastplus/commit/9285809bf75c98ac69ecf20add0d7415faa2d697 diff --git a/debian/changelog b/debian/changelog index 36c35188..141d1772 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +ncbi-blast+ (2.8.1-1+deb10u1) buster; urgency=medium + + * debian/rules: DEB_CONFIGURE_EXTRA_FLAGS += --without-sse42. +(Closes: #951280.) + + -- Aaron M. Ucko Sun, 23 Feb 2020 20:11:40 -0500 + ncbi-blast+ (2.8.1-1) unstable; urgency=medium * New upstream release. diff --git a/debian/rules b/debian/rules index b017193c..15568fa7 100755 --- a/debian/rules +++ b/debian/rules @@ -14,7 +14,7 @@ DEB_CONFIGURE_EXTRA_FLAGS=--with-dll --with-mt --without-autodep \ --without-makefile-auto-update --with-flat-makefile --without-caution \ --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ \ --with-build-root=BUILD --without-debug --without-downloaded-vdb \ ---with-mbedtls +--with-mbedtls --without-sse42 proj=algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/ #ifneq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
Processed: tagging 933334
Processing commands for cont...@bugs.debian.org: > tags 94 + buster Bug #94 [release.debian.org] RM ugene 1.31.1+dfsg-1 -- ROM; Please remove ugene 1.31.1+dfsg-1 from stable Added tag(s) buster. > thanks Stopping processing here. Please contact me if you need assistance. -- 94: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=94 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: Reassing RM bug from ftp.d.o to release.d.o
Processing commands for cont...@bugs.debian.org: > severity 94 normal Bug #94 [ftp.debian.org] RM ugene 1.31.1+dfsg-1 -- ROM; Please remove ugene 1.31.1+dfsg-1 from stable Severity set to 'normal' from 'serious' > reassign 94 release.debian.org Bug #94 [ftp.debian.org] RM ugene 1.31.1+dfsg-1 -- ROM; Please remove ugene 1.31.1+dfsg-1 from stable Bug reassigned from package 'ftp.debian.org' to 'release.debian.org'. Ignoring request to alter found versions of bug #94 to the same values previously set Ignoring request to alter fixed versions of bug #94 to the same values previously set > user release.debian@packages.debian.org Setting user to release.debian@packages.debian.org (was juhaninummin...@gmail.com). > usertag 94 + rm There were no usertags set. Usertags are now: rm. > stop Stopping processing here. Please contact me if you need assistance. -- 94: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=94 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#952407: transition: libmypaint
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-CC: jbi...@debian.org pkg-gnome-maintain...@lists.alioth.debian.org Dear Release Team, I am looking into initiating the transition as indicated in the automatic transition tracker: https://release.debian.org/transitions/html/auto-libmypaint.html . The only reverse (build-)dependency is GIMP. I have tested to rebuild GIMP against the new libmypaint and everything looks okay. -- Thanks, Boyuan Yang signature.asc Description: This is a digitally signed message part
Bug#951871: buster-pu: package clamav/0.102.2+dfsg-0+deb10u1
On 2020-02-22 22:31:21 [+], Adam D. Barratt wrote: > > How does this seem for an SUA snippet? perfect. Thank you. > Regards, > > Adam Sebastian
Bug#952381: nmu: ros-geometric-shapes_0.6.1-1
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu nmu ros-geometric-shapes_0.6.1-1 . ANY . unstable . -m "rebuild against new liboctomap-dev (Closes: #952277)" -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.4.0-4-amd64 (SMP w/8 CPU cores) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled
