Bug#540914: marked as done (O: myspell-sl -- Slovenian dictionary for myspell)

2015-10-02 Thread Debian Bug Tracking System 
Your message dated Fri, 02 Oct 2015 13:35:25 +
with message-id 
and subject line Bug#800529: Removed package(s) from unstable
has caused the Debian Bug report #540914,
regarding O: myspell-sl -- Slovenian dictionary for myspell
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
540914: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=540914
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: normal

On Mon, Aug 03, 2009 at 04:17:49PM -0700, Jure Cuhalev wrote:
> I don't have access to my Debian computers anymore :( Please feel free  
> to NMU, sl_SI at any time or orphan it so someone else can take it over  
> if needed.

Per request of the maintainer (see above) I am orphaning myspell-sl.

Maintaining a package requires time and skills. Please only adopt this
package if you will have enough time and attention to work on it.

If you want to be the new maintainer, please see
http://www.debian.org/devel/wnpp/index.html#howto-o for detailed
instructions how to adopt a package properly.

Some information about this package:

Package: myspell-sl
Binary: myspell-sl
Version: 1.0-1.1
Priority: optional
Section: text
Maintainer: Jure Cuhalev 
Build-Depends-Indep: debhelper (>= 4.0.0)
Architecture: all
Standards-Version: 3.6.1
Format: 1.0
Directory: pool/main/m/myspell-sl
Files:
 eed197fc34c54fd512e927e8a0014658 577 myspell-sl_1.0-1.1.dsc
 43c8b5aeb5bed073955a43f22018718d 1181233 myspell-sl_1.0.orig.tar.gz
 880730948f3783d9bd2432d97e4a4659 2387 myspell-sl_1.0-1.1.diff.gz

Package: myspell-sl
Priority: optional
Section: text
Installed-Size: 2980
Maintainer: Jure Cuhalev 
Architecture: all
Version: 1.0-1.1
Depends: dictionaries-common (>= 0.10)
Conflicts: openoffice.org (<= 1.0.3-2)
Filename: pool/main/m/myspell-sl/myspell-sl_1.0-1.1_all.deb
Size: 1181006
MD5sum: d000cf3ec9cbd0d07f6b579e7d6e57a8
SHA1: 80bdd057482655ad839cad676e9a03d959ee8473
SHA256: 70e190ebb06454b17b16f6ba99bbe178c2c730475b5a3b020bea54351ca4f74c
Description: Slovenian dictionary for myspell
 This package contains a Slovenian myspell dictionary , which will give
 openoffice.org and mozilla users the ability to  automatically spellcheck
 and hyphenate Slovenian text.
Tag: culture::slovenian, made-of::dictionary, role::app-data, use::checking
Task: slovenian-desktop

Regards,

Rene


--- End Message ---
--- Begin Message ---
Version: 1.0-5+rm

Dear submitter,

as the package myspell-sl has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/800529

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---

Bug#800684: ITP: python-privacyidea -- Two Factor Authentication system for OTP and other tokens

2015-10-02 Thread Cornelius Kölbel 
Package: wnpp
Severity: wishlist

privacyIDEA is an open solution for two-factor authentication.
privacyIDEA aims to not bind you to any decision of the authentication
protocol or it does not dictate you where your user information should
be stored. This is achieved by its totally modular architecture.
privacyIDEA supports a long list of different token types like HOTP,
TOTP, mOTP, SMS, Email, Google Authenticator, TiQR (OCRA), U2F,
x509 certificates, SSH keys, RADIUS, Remote...
It can read users from LDAP/AD, SQL, flat files and SCIM services.
It is licensed under AGPLv3

homepage: http://www.privacyidea.org
source: http://github.com/privacyidea/privacyidea
 

-- 
Cornelius Kölbel
cornelius.koel...@netknights.it
+49 151 2960 1417

NetKnights GmbH
http://www.netknights.it
Landgraf-Karl-Str. 19, 34131 Kassel, Germany
Tel: +49 561 3166797, Fax: +49 561 3166798

Amtsgericht Kassel, HRB 16405
Geschäftsführer: Cornelius Kölbel




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Bug#755303: marked as done (ITA: remmina -- remote desktop client for GNOME desktop environment)

2015-10-02 Thread Debian Bug Tracking System 
Your message dated Fri, 02 Oct 2015 13:34:34 +
with message-id 
and subject line Bug#755303: fixed in remmina 1.1.2-3
has caused the Debian Bug report #755303,
regarding ITA: remmina -- remote desktop client for GNOME desktop environment
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
755303: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=755303
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: normal

I request an adopter for remmina source package.

It is poorly maintained upstream, and it could be eventually removed if nobody
is willing to give this package some love.
--- End Message ---
--- Begin Message ---
Source: remmina
Source-Version: 1.1.2-3

We believe that the bug you reported is fixed in the latest version of
remmina, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 755...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Jörg Frings-Fürst  (supplier of updated remmina 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 30 Sep 2015 19:15:27 +0200
Source: remmina
Binary: remmina remmina-common remmina-plugin-rdp remmina-plugin-vnc 
remmina-plugin-xdmcp remmina-plugin-nx remmina-plugin-telepathy 
remmina-plugin-gnome remmina-dbg
Architecture: source
Version: 1.1.2-3
Distribution: unstable
Urgency: medium
Maintainer: Jörg Frings-Fürst 
Changed-By: Jörg Frings-Fürst 
Description:
 remmina- remote desktop client for GNOME desktop environment
 remmina-common - common files for remmina remote desktop client
 remmina-dbg - remote desktop client - debug pakcage
 remmina-plugin-gnome - GNOME plugin for remmina remote desktop client
 remmina-plugin-nx - NX plugin for remmina remote desktop client
 remmina-plugin-rdp - RDP plugin for remmina remote desktop client
 remmina-plugin-telepathy - Telepathy plugin for remmina remote desktop client
 remmina-plugin-vnc - VNC plugin for remmina remote desktop client
 remmina-plugin-xdmcp - XDMCP plugin for remmina remote desktop client
Closes: 755303 788020
Changes:
 remmina (1.1.2-3) unstable; urgency=medium
 .
   [ Jörg Frings-Fürst ]
   * New Maintainer. (Closes: #755303)
   * debian/control:
 - Set myself as Maintainer.
 - Reorder *-Depends.
 - Change requested cmake version to >= 2.8.
 - Change Vcs-* to new cgit based repository viewer.
   * debian/copyright:
 - Add myself to the list of authors for debian/*.
 - Change GPL-2+ to GPL-2+ with SSL exception.
   * debian/watch:
 - Add changes from bartm.
   Thanks to Bart Martens 
 .
   [ Luca Falavigna ]
   * debian/control:
 - Switch to vte 2.91 (Closes: #788020).
 - Remove obsolete Breaks/Replaces fields.
Checksums-Sha1:
 b7287470e7c994418bbaf08621e9cf546a9f7a7d 2620 remmina_1.1.2-3.dsc
 0eee99f0ab371065851934699ed9a2e05b23ab32 8384 remmina_1.1.2-3.debian.tar.xz
Checksums-Sha256:
 db0d77f61e063d61d7cb86b856ee196d630f4f269ce2d981ffeac30fbbf8c49d 2620 
remmina_1.1.2-3.dsc
 13ba151c87979dcdf1545c682ed8d3237a712cbc26452ab69dcffee23b02e294 8384 
remmina_1.1.2-3.debian.tar.xz
Files:
 1c6dde2fc9cfc013c9951ae1d838336f 2620 gnome optional remmina_1.1.2-3.dsc
 ae799ec88018ecab7d4448c2e58ecfb0 8384 gnome optional 
remmina_1.1.2-3.debian.tar.xz

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Processed: retitle 677845 to RFP: r-cran-devtools -- Tools to make developing R code easier

2015-10-02 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> retitle 677845 RFP: r-cran-devtools -- Tools to make developing R code easier
Bug #677845 [wnpp] RFP: r-crane-devtools -- Tools to make developing R code 
easier
Changed Bug title to 'RFP: r-cran-devtools -- Tools to make developing R code 
easier' from 'RFP: r-crane-devtools -- Tools to make developing R code easier'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
677845: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677845
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#788076: #788076: Packaged version of gtk3-nocsd

2015-10-02 Thread Christian Seiler 
Hi Axel,

I've now figured out a way to make gtk3-nocsd work with all relevant
Gtk+3 versions (including those currently in Debian stable, unstable
and experimental). Since I had already reported a couple of things
upstream earlier, and the original author is a bit short on time
currently, he gave me upstream commit access, so I pushed that upstream
and created an initial release on GitHub.

I've packaged that for Debian and uploaded it to mentors.debian.net:
https://mentors.debian.net/package/gtk3-nocsd

I've tried to follow your guidelines in
https://people.debian.org/~abe/sponsoring/
as close as possible:

 - no lintian errors
 - three lintian warnings that I override, please see the comment in
   the lintian-overrides file for as to why I do that
 - no lintian informational messages
 - two lintian pedantic messages w.r.t. upstream:
 - no upstream changelog
   (Ok, technically I could push a changelog upstream, but I'll
   only do that if there's a new release there. This is the
   first upstream version anyway.)
 - upstream releases are not gpg-signed
   (That would be something the original author would have to do,
   since it's his repository.)
 - adequate: no errors with the installed package
 - blhc: no messages
 - dh(7) build system with minimal debian/rules
 - debian/compat is 9
 - debian/copyright follows DEP-5
 - the preloadable library is properly Multi-Arch (thus two binary
   packages - one arch:all for the logic to enable preloading and
   one arch:any for the library itself)

I've successfully build-tested the package in a clean pbuilder
environment for both amd64 and i386 on all of jessie, stretch and
sid. I've been using the package on my Jessie system (where the
Gtk+3 version is old enough that the original version worked) for
quite a couple of months now - and I've tested the package against
more recent Gtk+3 versions.

The package disables CSDs by default (on X11), but this is overridable
by both the administrator and the user, see README.Debian for details.
If GNOME is used as a session, it makes sure that CSDs are enabled,
because I don't want to break the user experience of GNOME users.

It would be great if you could review it.

I'd like to also use git for packaging and collab-maint on alioth, but
I can't create anything there myself (neither DD nor DM, although I
plan to apply for DM status). It would be great if you could create a
repository there and grant me access to it (my alioth username is
chris_se-guest).

Regards,
Christian



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Bug#800700: ITP: python-keystoneauth1 -- authentication library for OpenStack Identity

2015-10-02 Thread Thomas Goirand 
Package: wnpp
Severity: wishlist
Owner: Thomas Goirand 

* Package name: python-keystoneauth1
  Version : 1.1.0
  Upstream Author : OpenStack Foundation 
* URL : https://github.com/openstack/keystoneauth
* License : Apache-2.0
  Programming Lang: Python
  Description : authentication library for OpenStack Identity

 Keystoneauth provides a standard way to do authentication and service requests
 within the OpenStack ecosystem. It is designed for use in conjunction with the
 existing OpenStack clients and for simplifying the process of writing new
 clients.

Processed: Fix title

2015-10-02 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> retitle 800531 RFP: dlib -- general purpose, cross platform c++ library
Bug #800531 [wnpp] RFP: wnpp -- dlib - general purpose, cross platform c++ 
library
Changed Bug title to 'RFP: dlib -- general purpose, cross platform c++ library' 
from 'RFP: wnpp -- dlib - general purpose, cross platform c++ library'
> --
Stopping processing here.

Please contact me if you need assistance.
-- 
800531: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800531
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#800697: ITP: django-piston3: a django mini-framework for creating apis.

2015-10-02 Thread LaMont Jones 
Package: wnpp
Severity: wishlist
--

lamont

Bug#772823: kimchi: another packaging and another version

2015-10-02 Thread Gianfranco Costamagna 
Hi Frederic

can you please upload the package (if you think it is good for review/upload) 
on mentors.d.o
http://mentors.debian.net/intro-maintainers

and open an RFS bug then?
(when the package is uploaded you should be able to open an RFS bug starting 
from this template)
https://mentors.debian.net/sponsors/rfs-howto/kimchi

ITP bugs are not ideal for discussing packaging issues/review, while RFS are.


cheers,

Gianfranco




Il Venerdì 2 Ottobre 2015 17:46, Frederic Bonnard  ha 
scritto:
Hi,

Here is a new packaging especially to fix most of the previous points and for
the new version 1.5.1 of kimchi.
Also :
- added a patch to fix the 404 error for the novnc popup (this patch won't be
  pushed upstream as is as upstream reorganize the code)
- documented more things in README.Debian (user configuration, possible errors) 
and README.source
- updated copyright (and a fix from Ubuntu, thanks Robie)

Note :
- kimchi source is being restructured, so package may have several changes in
  the next version
- kimchi license is going to change, back to LGPL v2

F.

On Fri, 28 Aug 2015 18:31:31 +0100, Gianfranco Costamagna 
 wrote:
> 
> Hi,
> 
> >then, how should I specify the "License:" field if it's not a "named" 
> >license ?
> >
> 
> I guess it might fall into LGPL or whatever (just check the directories)
> 
> >> and please tell somewhere the package name, because I forgot it
> >> (and I'm too lazy to check)
> >
> >It's in the subject now ; we won't lose it easily, eventually.
> 
> thanks!
> 
> G.
>

Processed: ITP: python-privacyidea -- Two Factor Authentication system for OTP and other tokens

2015-10-02 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> owner 800684 Cornelius Kölbel 
Bug #800684 [wnpp] ITP: python-privacyidea -- Two Factor Authentication system 
for OTP and other tokens
Owner recorded as Cornelius Kölbel .
> stop
Stopping processing here.

Please contact me if you need assistance.
-- 
800684: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800684
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#772823: kimchi: another packaging and another version

2015-10-02 Thread Frederic Bonnard 
Hi,

Here is a new packaging especially to fix most of the previous points and for
the new version 1.5.1 of kimchi.
Also :
- added a patch to fix the 404 error for the novnc popup (this patch won't be
  pushed upstream as is as upstream reorganize the code)
- documented more things in README.Debian (user configuration, possible errors) 
and README.source
- updated copyright (and a fix from Ubuntu, thanks Robie)

Note :
- kimchi source is being restructured, so package may have several changes in
  the next version
- kimchi license is going to change, back to LGPL v2

F.

On Fri, 28 Aug 2015 18:31:31 +0100, Gianfranco Costamagna 
 wrote:
> 
> Hi,
> 
> >then, how should I specify the "License:" field if it's not a "named" 
> >license ?
> >
> 
> I guess it might fall into LGPL or whatever (just check the directories)
> 
> >> and please tell somewhere the package name, because I forgot it
> >> (and I'm too lazy to check)
> >
> >It's in the subject now ; we won't lose it easily, eventually.
> 
> thanks!
> 
> G.
>

Bug#800702: ITP: python-jwcrypto -- Python implementation of JOSE Web standards

2015-10-02 Thread Timo Aaltonen 
Package: wnpp
Severity: wishlist
Owner: Timo Aaltonen 

* Package name: python-jwcrypto
  Version : 0.2.1
  Upstream Author : Simo Sorce
* URL : https://github.com/simo5/jwcrypto
* License : LGPL-3+
  Programming Lang: Python
  Description : Python implementation of JOSE Web standards

 This python module implements JWK,JWS,JWE specifications using
 python-cryptography.

Bug#799759: RFH: freerdp -- RDP client for Windows Terminal Services (X11 client)

2015-10-02 Thread sriram 
Hi Mike, 

Let me know when you would be available. I'm on IRC my nickname is
sriramr on freenode. Thanks

On Thu, Oct 1, 2015, at 03:38 PM, Mike Gabriel wrote:
> Hi Sriram,
> (Re-Cc:ing the freerdp RFH bug)
> 
> On  Mi 30 Sep 2015 20:01:03 CEST, sriram wrote:
> 
> > Hi Mike,
> >
> > I would be interested in working with freerdp. Could you let me know?
> >
> > Sriram
> 
> together with you, we are now three persons having an interest in  
> handling freerdp together. I also received positive feedback on my RFH  
> bug by Bernhard Miklautz. Bernhard is member of the FreeRDP upstream  
> team and know the FreeRDP really well.
> 
> As we (Bernhard and I) hang out on Freenode (#freerdp channel), could  
> you get in touch with him and me there (my nick is "sunweaver",  
> Bernhard's nick is "diget") for further coordination of the work?
> 
> Thanks,
> Mike
> -- 
> 
> DAS-NETZWERKTEAM
> mike gabriel, herweg 7, 24357 fleckeby
> fon: +49 (1520) 1976 148
> 
> GnuPG Key ID 0x25771B31
> mail: mike.gabr...@das-netzwerkteam.de, http://das-netzwerkteam.de
> 
> freeBusy:
> https://mail.das-netzwerkteam.de/freebusy/m.gabriel%40das-netzwerkteam.de.xfb
> Email had 1 attachment:
> + Attachment2
>   1k (application/pgp-signature)

Bug#784185: marked as done (ITA: netmask -- helps determine network masks)

2015-10-02 Thread Debian Bug Tracking System 
Your message dated Fri, 02 Oct 2015 17:19:22 +
with message-id 
and subject line Bug#784185: fixed in netmask 2.4.2-1
has caused the Debian Bug report #784185,
regarding ITA: netmask -- helps determine network masks
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
784185: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=784185
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: normal

Since my time for working on Debian is near zero, the best option is
to find a new owner for those packages

-- 
Luis
--- End Message ---
--- Begin Message ---
Source: netmask
Source-Version: 2.4.2-1

We believe that the bug you reported is fixed in the latest version of
netmask, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 784...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Guilhem Moulin  (supplier of updated netmask package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 29 Sep 2015 01:53:57 +0200
Source: netmask
Binary: netmask
Architecture: source
Version: 2.4.2-1
Distribution: unstable
Urgency: low
Maintainer: Guilhem Moulin 
Changed-By: Guilhem Moulin 
Description:
 netmask- helps determine network masks
Closes: 79512 784185
Changes:
 netmask (2.4.2-1) unstable; urgency=low
 .
   [ Robert Stone ]
   * New upstream release.  (Closes: #79512.)
 .
   [ Guilhem Moulin ]
   * New maintainer.  (Closes: #784185.)
   * debian/compat: bump debhelper compatibility level from 4 to 9.
   * debian/source/format: 3.0 (quilt)
   * debian/control:
 + Bump Standards-Version to 3.9.6 (no changes necessary).
 + Add 'Homepage', 'Vcs-Git', 'Vcs-Browser' fields.
 + Add 'dh-autoreconf' and 'texinfo' to Build-Depends.
   * debian/copyright: convert to machine-readable format (1.0).
   * debian/gbp.conf: add file.
   * debian/patches:
 + netmask.texi: Add the missing '@direntry' to the info document.
 + Add foreign to AM_INIT_AUTOMAKE macro.
   * Remove debian.{dirs,info}, which are taken care of by the upstream build
 system.
   * debian/watch: add file.
   * debian/upstream/metadata: add file.
   * debian/upstream/signing-key.asc: add keyfile used to sign upstream release
 tags.
Checksums-Sha1:
 e62e277c4ac77740582db400f202b6d954531fb4 1791 netmask_2.4.2-1.dsc
 6973f46ff85875268f1c1cdfcbd43f7477be5bd5 45044 netmask_2.4.2.orig.tar.gz
 4cc8b14874c00051b438675ed1ea9ad0a200b54d 7308 netmask_2.4.2-1.debian.tar.xz
Checksums-Sha256:
 bdcec4114f43f88112ec773db021350b198335eee9140a808066aaea7cfe833b 1791 
netmask_2.4.2-1.dsc
 a8501d8607604719e578752cb8371664c86370e44a88d708378a5d57f91dfe4d 45044 
netmask_2.4.2.orig.tar.gz
 46c592733c0ccb04f8742da29f531780bbd1a15a679cd9a305d4f6d02f0585cd 7308 
netmask_2.4.2-1.debian.tar.xz
Files:
 a3d69283c2cb7600465702ed3b275ad3 1791 net optional netmask_2.4.2-1.dsc
 6838fbe1ce9cc00ac6b79f14d1fab4a6 45044 net optional netmask_2.4.2.orig.tar.gz
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netmask_2.4.2-1.debian.tar.xz

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Bug#800717: ITP: python-twistar -- Python ORM library for the Twisted framework

2015-10-02 Thread Jan-Pascal van Best 
Package: wnpp
Severity: wishlist
Owner: "Jan-Pascal van Best" 

* Package name: python-twistar
  Version : 1.3
  Upstream Author : Brian Muller 
* URL : http://findingscience.com/twistar/
* License : MIT, BSD-derived
  Programming Lang: Python
  Description : Python ORM library for the Twisted framework


Twistar is a Python implementation of the active record pattern (also known as
an object-relational mapper or ORM) that uses the Twisted framework’s RDBMS
support to provide a non-blocking interface to relational databases.

Twistar is a dependency for denyhosts-server, see its ITP, bug #800630. I would
prefer to maintain it within the context of the python-modules team. I will 
seek 
a sponsor from the team first.

Bug#795176: marked as done (ITP: sumaclust -- fast and exact clustering of genomic sequences)

2015-10-02 Thread Debian Bug Tracking System 
Your message dated Fri, 02 Oct 2015 22:00:45 +
with message-id 
and subject line Bug#795176: fixed in sumaclust 1.0.10-1
has caused the Debian Bug report #795176,
regarding ITP: sumaclust -- fast and exact clustering of genomic sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
795176: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795176
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: sumaclust
  Version : 1.0.10
  Upstream Author : Céline Mercier 
* URL : http://metabarcoding.org/sumaclust
* License : CeCILL-2
  Programming Lang: C
  Description : fast and exact clustering of genomic sequences
 With the development of next-generation sequencing, efficient tools are
 needed to handle millions of sequences in reasonable amounts of time.
 Sumaclust is a program developed by the LECA. Sumaclust aims to cluster
 sequences in a way that is fast and exact at the same time. This tool
 has been developed to be adapted to the type of data generated by DNA
 metabarcoding, i.e. entirely sequenced, short markers. Sumaclust
 clusters sequences using the same clustering algorithm as UCLUST and CD-
 HIT. This algorithm is mainly useful to detect the 'erroneous' sequences
 created during amplification and sequencing protocols, deriving from
 'true' sequences.

Remark: This package is a predependency to upgrade qiime and will be
maintained by the Debian Med team at
   svn://anonscm.debian.org/debian-med/trunk/packages/sumaclust/trunk/
--- End Message ---
--- Begin Message ---
Source: sumaclust
Source-Version: 1.0.10-1

We believe that the bug you reported is fixed in the latest version of
sumaclust, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 795...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated sumaclust package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Tue, 11 Aug 2015 14:59:19 +0200
Source: sumaclust
Binary: sumaclust
Architecture: source amd64
Version: 1.0.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 sumaclust  - fast and exact clustering of genomic sequences
Closes: 795176
Changes:
 sumaclust (1.0.10-1) unstable; urgency=medium
 .
   * Initial upload to Debian (Closes: #795176)
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sumaclust_1.0.10-1.debian.tar.xz
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sumaclust_1.0.10-1_amd64.deb

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Bug#800733: ITP: transrate -- quality assessment of de-novo transcriptome assemblies

2015-10-02 Thread Michael Crusoe 
Package: wnpp
Owner: "Debian Ruby Team" 
Severity: wishlist
X-Debbugs-CC: debian-r...@lists.debian.org

* Package name: transrate
  Version : 1.0.1
  Upstream Author : - Richard Smith-Unna, Chris Boursnell, Rob Patro,
Julian Hibberd, Steven Kelly
* URL : http://hibberdlab.com/transrate/
* License : MIT
  Programming Lang: Ruby & C
  Description : quality assessment of de-novo transcriptome assemblies

a library and command-line tool for quality assessment of de-novo
transcriptome assemblies

This package will be maintained as part of the Debian Ruby packaging team.

Bug#800734: ITP: ruby-threach -- Threaded each

2015-10-02 Thread Michael Crusoe 
Package: wnpp
Owner: "Debian Ruby Team" 
Severity: wishlist
X-Debbugs-CC: debian-r...@lists.debian.org

* Package name: ruby-threach
  Version : 0.2.0
  Upstream Author : Bill Dueber 
* URL : http://github.com/billdueber/threach
* License : MIT
  Programming Lang: Ruby
  Description : Threaded each

An addition to the Enumerable Ruby module that allows easy use of threaded
 each and each-like iterators. It's a very simple producer-consumer model.

If you're using stock (MRI) ruby -- you probably shouldn't bother with
threach unless you're doing IO-intensive stuff. It'll just slow things
down. But if you're using a ruby implementation that has real threads, like
JRuby, this will give you relatively painless multi-threading.

This package is a dependency for 'ruby-crb-blast'

This package will be maintained as part of the Debian Ruby packaging team.

Bug#800735: ITP: custodia -- Modular and pluggable Secrets Manager

2015-10-02 Thread Timo Aaltonen 
Package: wnpp
Severity: wishlist
Owner: Timo Aaltonen 

* Package name: custodia
  Version : 0.1.0
  Upstream Author : Simo Sorce
* URL : https://github.com/simo5/custodia
* License : LGPL-3+
  Programming Lang: Python
  Description : Modular and pluggable Secrets Manager

 Custodia allows one to serve retrieve, manage and store secrets for other
 applications. It is useful for distributed, stateless applications that use
 an image file base approach for instantiation like container based images.
 But it is alaso useful to manage distribution of key material across a
 multiple machines over a network.

Bug#800737: ITP: ruby-crb-blast -- Run conditional reciprocal best blast

2015-10-02 Thread Michael Crusoe 
Package: wnpp
Owner: "Debian Ruby Team" 
Severity: wishlist
X-Debbugs-CC: debian-r...@lists.debian.org

* Package name: ruby-crb-blast
  Version : 0.6.4
  Upstream Author : Chris Boursnell & Richard Smith-Unna
* URL : https://github.com/cboursnell/crb-blast
* License : MIT
  Programming Lang: Ruby
  Description : Run conditional reciprocal best blast

CRB-BLAST is a novel method for finding orthologs between one set of
sequences and another. This is particularly useful in genome and
transcriptome annotation.

CRB-BLAST initially performs a standard reciprocal best BLAST. It does this
by performing BLAST alignments of query->target and target->query.
Reciprocal best BLAST hits are those where the best match for any given
query sequence in the query->target alignment is also the best hit of the
match in the reverse (target->query) alignment.

Reciprocal best BLAST is a very conservative way to assign orthologs. The
main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to
apply to each pairwise alignment by taking into account the overall
relatedness of the two datasets being compared. This is done by fitting a
function to the distribution of alignment e-values over sequence lengths.
The function the e-value cutoff for a sequence of given length.

This package is a dependency for 'transrate'

This package will be maintained as part of the Debian Ruby packaging team.

Bug#800739: ITP: python-burrito-fillings -- burrito application controllers for bioinformatics

2015-10-02 Thread Andreas Tille 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: python-burrito-fillings
  Version : 0.1.1
  Upstream Author : burrito development team 
* URL : https://github.com/biocore/burrito/
* License : BSD
  Programming Lang: Python
  Description : burrito application controllers for bioinformatics
 The burrito-fillings project provides wrappers for bioinformatics tools
 using the burrito framework.
 .
 burrito-fillings (canonically pronounced boar-ee-toe phil-ings; python
 package name bfillings) contains burrito CommandLineApplication
 subclasses (i.e., application controllers) for bioinformatics
 applications. This is intended to be a temporary package for the
 application controllers that are used in QIIME as we figure out which of
 these we will continue to support.


Remark: This precondition to upgrade qiime was prepared by Tim Booth from
BioLinux in
   
svn://anonscm.debian.org/debian-med/trunk/packages/python-burrito-fillings/trunk/
and is now taken over by the Debian Med team.

Bug#800740: ITP: ruby-pathname2 -- alternate implementation of the Pathname class

2015-10-02 Thread Michael Crusoe 
Package: wnpp
Owner: "Debian Ruby Team" 
Severity: wishlist
X-Debbugs-CC: debian-r...@lists.debian.org

* Package name: ruby-pathname2
  Version : 1.7.4
  Upstream Author : Daniel J. Berger 
* URL : https://github.com/djberg96/pathname2
* License : MIT
  Programming Lang: Ruby
  Description : alternate implementation of the Pathname class
 pathname2 is a library that provides an implementation of the Pathname
 class different from the one that ships as part of the Ruby standard
 library. It is a subclass of String, though several methods have been
 overridden to better fit a path context. In addition, it supports file
 URL's as paths, provides additional methods for Windows paths, and
 handles UNC paths on Windows properly.

This package is a dependency for 'ruby-fixwhich'

This package will be maintained as part of the Debian Ruby packaging team.