Bug#595958: ITP: paml -- Phylogenetic Analysis by Maximum Likelihood

2010-09-08 Thread Jeremiah Foster

On Sep 7, 2010, at 17:54, Steffen Moeller wrote:

 Package: wnpp
 Severity: wishlist
 Owner: Steffen Moeller steffen_moel...@gmx.de
 
 * Package name: paml
 * URL : http://abacus.gene.ucl.ac.uk/software/paml.html
 * License : academics only
  Description : Phylogenetic Analysis by Maximum Likelihood
 
 PAML is a package of programs for phylogenetic analyses of DNA or protein 
 sequences using maximum likelihood. It is maintained and distributed for 
 academic use free of charge by Ziheng Yang.
 PAML is not good for tree making. It may be used to estimate parameters and 
 test hypotheses to study the evolutionary process, when you have 
 reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, 
 PhyML, RaxML, etc. 

Could you explain a little more about the license? It doesn't sound like it 
really meets the Debian Free Software Guidlines, which say; 

No Discrimination Against Fields of Endeavor

The license must not restrict anyone from making use of the program in a 
specific field of endeavor. For example, it may not restrict the program from 
being used in a business, or from being used for genetic research.

My reading of the dsfg would be that this academics only license would not be 
acceptable in Debian.

Regards,

Jeremiah





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Re: Processed: owner 578170

2010-06-22 Thread Jeremiah Foster

On Jun 22, 2010, at 07:54, Debian Bug Tracking System wrote:

 Processing commands for cont...@bugs.debian.org:
 
 owner 578170 !
 Bug #578170 [wnpp] ITP: mic2 -- A tool for creating and manipulating Moblin 
 and MeeGo images.
 Owner changed from Jeremiah C. Foster jerem...@jeremiahfoster.com to 
 Fathi Boudra f...@debian.org.
 thanks
 Stopping processing here.

Thanks for picking this up Fathi, right now my bandwidth is limited but I hope 
to follow the progress with this bug and help where I can.

Regards,

Jeremiah

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Bug#475160: ITP: ASCIIO - draw ASCII diagrams dynamically

2010-03-20 Thread Jeremiah Foster

On Mar 19, 2010, at 14:01, David Paleino wrote:

 block 574615 by 574621
 thanks
 
 On Friday 19 March 2010 13:00:34, David Paleino wrote:
 As soon as I'll finish this, you're free to pick whatever package you want
 :) -- I'm not going to package these myself for, say, one month (let's
 give time to the Debian Perl Team to detect them!)
 
 Seems like I ended up the missing dependencies chain. As I thought, other 
 packages had useless dependencies as well.

Wow, great. I hadn't thought of doing that work - glad you did that since that 
will save some time.
 
 Now, you're free to pick up and maintain any of the missing deps, if you wish 
 :)

I will try and create a list of the rest of the dependencies and start 
cherry-picking the easy ones. :)

Jeremiah





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Bug#475160: ITP: ASCIIO - draw ASCII diagrams dynamically

2010-03-19 Thread Jeremiah Foster

On Mar 19, 2010, at 12:11 PM, David Paleino wrote:

 please keep the bug CCed, so we can publicly keep history of the ITP.
 
 On Friday 19 March 2010 12:03:37, Jeremiah Foster wrote:
 On Mar 19, 2010, at 11:57 AM, David Paleino wrote:

  I do not see a real problem about depending on missing modules -- we 
 just need them packaged.
 Here's my plan: I'm going to check what packages are exactly need to 
 build/run 
 asciio, and file RFPs. That's because I don't really want to maintain Perl 
 modules just because they happen to be dependencies to a package I want to 
 maintain. In case those RFPs aren't picked up by the Debian Perl Team, I'm 
 available to make them ITPs, and maintain them pro tempore.
 
 From a quick analysis, I see that it's only missing 3 dependencies:
 
 - Eval::Context
 - Data::TreeDumper::Renderer::GTK
 - Directory::Scratch::Structured
 
 Sure, these might need other modules to work, and that's why the blocking 
 mechanism exists. We just need to climb up the dependency chain until it's 
 satisfied.
 
 Let me know what you want me to do to help - I think there are still a
 bunch of dependencies. If you want we can split them up and I'll try to
 keep up with you?
 
 What exactly needs to be split up from the code?

I was only referring to splitting up the work of packaging modules from CPAN. I 
don't believe the code needs any splitting.

Jeremiah


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Bug#566729: ITP: libclass-perl -- Alias for __PACKAGE__

2010-01-24 Thread Jeremiah Foster

Package: wnpp
Severity: wishlist
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com


* Package name: libclass-perl
  Version : 1.00
  Upstream Author : Michael G. Schwern mschw...@cpan.org
* URL : http://cpan.uwinnipeg.ca/htdocs/CLASS/CLASS.html
* License : GPL | Artistic
  Programming Lang: Perl
  Description : Alias for __PACKAGE__

CLASS and $CLASS are both synonyms for __PACKAGE__. Easier to type.
$CLASS has the additional benefit of working in strings

-- System Information:
Debian Release: 5.0.3
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: i386 (i686



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Bug#407652: ITA: html2ps -- HTML to PostScript converter

2009-06-01 Thread Jeremiah Foster


On Jun 1, 2009, at 16:08, Niels Thykier wrote:


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Hi Jeremiah and Steaphan

It appears, I was not paying attention with my last reply (I did not
notice it was Steaphan, who wrote and not Jeramiah .). Sorry for the
mail confusion.

Nevertheless, I am glad that you are going to adopt this package
Jeremiah. If you are both interested (in joint maintainership), you
can both maintain it. Not sure how it works, but some - especially
larger - packages have multiple uploaders/maintainers.


Oh Jeremiah, you may want to merge #531434 with this one (or close
#531434).


I'll close #531434. :)

Steaphan, feel free to include me if you want / need help. Otherwise I  
will assume you have things under control. :)


Jeremiah



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Bug#377467: RFH: svn-buildpackage -- helper programs to maintain Debian packages with Subversion

2009-05-15 Thread Jeremiah Foster

Hi Neil et. al.,

	We use svn-inject a lot in the debian perl group, and I think I have  
even sent a patch against it. I am happy to help out here. I am going  
to download the source and take a look at it now. :)


Jeremiah



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Bug#514390: Status of Test-Apocalypse

2009-05-11 Thread Jeremiah Foster


On May 11, 2009, at 5:14, Ryan Niebur wrote:


Hi Jeremiah,

On Fri, May 08, 2009 at 10:04:06AM +0200, Jeremiah Foster wrote:
Jeremiah, for libtest-strict-perl it looks like somebody just  
needs to

do the TODOs listed in the changelog.


I will do this, now.


I see that you did this, thanks for that. however it doesn't show up
in the ready for upload section in PET because there's a new
upstream version. can you please svn-upgrade it or do you want me to?


I shall do it immediately. :)



Jeremiah, it looks like libtest-file-perl just needs you to either  
ask

upstream to make the change or patch it in.


I suspect I will have to patch it in myself, I have talked with  
upstream
about this, but only in passing. I will try and discuss it again  
but I

doubt brian will want my advice on how to build his modules.



looking at this myself, I see no need to ask brian to move the
file. afaik, the correct fix for this is to make a change to the
Makefile.PL like this:
-   'lib/File.pm' = '$(INST_MAN3DIR)/Test::File.3',
+   'lib/File.pm' = '$(INST_MAN3DIR)/Test::File.$ 
(MAN3EXT)',


that should also be changed upstream. If you want me to I can patch
that into the package and forward it upstream.


That would be excellent - thanks for working this out.


I don't mean to rush you on these packages, sorry if I come across
that way (I kind of feel like I am..).


Not at all, please don't feel that way. What you are doing is the hard  
work of co-ordinating the debian-perl group so that specific software  
can get into debian and reach users. This is really, really important.  
I think you have been helpful and professional so I thank you for your  
efforts.


Warm regards,

Jeremiah



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Bug#524737: ITP: libb-hooks-op-check-perl -- Wrap OP check callbacks

2009-04-19 Thread Jeremiah Foster

Package: wnpp
Severity: wishlist
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com


* Package name: libb-hooks-op-check-perl
 Version : 0.15
 Upstream Author : Florian Ragwitz r...@debian.org  
* URL : http://cpan.uwinnipeg.ca/module/B::Hooks::OP::Check
* License : Artistic | GPL-1
 Programming Lang: Perl
 Description : Wrap OP check callbacks

 This module provides a C api for XS modules to hook into the  
callbacks of PL_check.

It is needed for packaging Devel::Declare.

-- System Information:
Debian Release: 5.0.1
 APT prefers stable
 APT policy: (500, 'stable')
Architecture: i386 (i686)



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Bug#509442: ITP: libmodule-util-perl -- provides useful functions for manipulating perl module names

2008-12-22 Thread Jeremiah Foster


Package: wnpp
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com
Severity: wishlist

* Package name: libmodule-util-perl
  Version : 1.05
  Upstream Author : Matt Lawrence matt...@cpan.org
* URL : 
http://search.cpan.org/~mattlaw/Module-Util-1.05/lib/Module/Util.pm
* License : (GPL, Artistic)
  Programming Lang: Perl
  Description : provides useful functions for manipulating perl  
module names


The main aim of Module::Util is to centralise some of the functions  
commonly used by modules
that manipulate other modules in some way, like converting module  
names to relative paths


-- System Information:
Debian Release: 5.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)




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Bug#489145: #489145: Stucked libgit-fastexport-perl ITP

2008-12-13 Thread Jeremiah Foster
I will try to get this into the debian-perl repository over the next  
couple of days, hopefully it won't have too many dependencies.


Jeremiah

On Dec 13, 2008, at 4:57 PM, Luca Bruno wrote:


Hi Edi,
Almost 6 months later(!!) is there any progress on this ITP?
Otherwise just release it as RFP.

I think the debian-perl team (Cc: here), could probably take care of  
it

in a fashionable manner.

Cheers, Luca

--
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: :'  :   The Universal O.S.| lucab (AT) debian.org
`. `'`  | GPG Key ID: 3BFB9FB3
 `- http://www.debian.org   | Debian GNU/Linux Developer





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Bug#489145: #489145: Stucked libgit-fastexport-perl ITP

2008-12-13 Thread Jeremiah Foster

Apparently it is already in the repo: 
http://svn.debian.org/viewsvn/pkg-perl/trunk/libgit-fastexport-perl/

Jeremiah

On Dec 13, 2008, at 5:11 PM, Jeremiah Foster wrote:

I will try to get this into the debian-perl repository over the next  
couple of days, hopefully it won't have too many dependencies.


Jeremiah

On Dec 13, 2008, at 4:57 PM, Luca Bruno wrote:


Hi Edi,
Almost 6 months later(!!) is there any progress on this ITP?
Otherwise just release it as RFP.

I think the debian-perl team (Cc: here), could probably take care  
of it

in a fashionable manner.

Cheers, Luca

--
.''`.  ** Debian GNU/Linux **  | Luca Bruno (kaeso)
: :'  :   The Universal O.S.| lucab (AT) debian.org
`. `'`  | GPG Key ID: 3BFB9FB3
`- http://www.debian.org| Debian GNU/Linux Developer



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Bug#508588: ITP: libdirectory-scratch-perl -- Easy-to-use self-cleaning scratch space.

2008-12-12 Thread Jeremiah Foster


Package: wnpp
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com
Severity: wishlist

* Package name: libdirectory-scratch-perl
  Version : 0.14
  Upstream Author : Jonathan Rockway jrock...@cpan.org
* URL : http://search.cpan.org/~jrockway/Directory-Scratch-0.14/
* License : GPL, Artistic
  Programming Lang: Perl
  Description : Easy-to-use self-cleaning scratch space.

When writing test suites for modules that operate on files, it's often  
inconvenient

to correctly create a platform-independent temporary storage space,
manipulate files inside it, then clean it up when the test exits.
The inconvenience usually results in tests that don't work everwhere,  
or worse,

no tests at all.

This module aims to eliminate that problem by making it easy to do  
things right.


-- System Information:
Debian Release: 5.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)



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Bug#508600: ITP: libcheck-isa-perl -- DWIM, correct checking of an object's class

2008-12-12 Thread Jeremiah Foster


Package: wnpp
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com
Severity: wishlist

* Package name: libcheck-isa-perl
  Version : 0.04
  Upstream Author : Yuval Kogman nothingm...@woobling.org
* URL : http://search.cpan.org/~nuffin/Check-ISA-0.04/
* License : (GPL, Artistic)
  Programming Lang: Perl
  Description : DWIM, correct checking of an object's class

This module provides several functions to assist in testing whether
a value is an object, and if so asking about its class.

-- System Information:
Debian Release: 5.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)




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Bug#508507: ITP: libipc-system-simple-perl -- Run commands simply, with detailed diagnostics.

2008-12-11 Thread Jeremiah Foster


Package: wnpp
Owner: Jeremiah C. Foster jerem...@jeremiahfoster.com
Severity: wishlist


* Package name: libipc-system-simple-perl
  Version : 0.16
  Upstream Author : Paul Fenwick p...@cpan.org
* URL : 
http://search.cpan.org/~pjf/IPC-System-Simple-0.16/lib/IPC/System/Simple.pm
* License : GPL, Artistic
  Programming Lang: Perl
  Description : Run commands simply, with detailed diagnostics.

Calling Perl's in-built system() function is easy, determining if it  
was successful is hard.

Let's face it, $? isn't the nicest variable in the world to play with,
and even if you do check it, producing a well-formatted error string  
takes a lot of work.


IPC::System::Simple takes the hard work out of calling external  
commands.


-- System Information:
Debian Release: 5.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)




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Bug#508243: ITP: IPC::System::Simple -- Run commands simply, with detailed diagnostics

2008-12-08 Thread Jeremiah Foster

Package: wnpp
Severity: wishlist
Owner: Jeremiah C. Foster [EMAIL PROTECTED]


* Package name: libipc-system-simple-perl
   Version : 0.16
   Upstream Author : Paul Jamieson Fenwick [EMAIL PROTECTED]
* URL : 
http://search.cpan.org/~pjf/IPC-System-Simple-0.16/lib/IPC/System/Simple.pm
* License : GPL, Artistic
   Programming Lang: Perl
   Description : Run commands simply, with detailed diagnostics

Calling Perl's in-built system() function is easy, determining if it  
was successful is hard. Let's face it, $? isn't the nicest variable in  
the world to play with, and even if you do check it, producing a well- 
formatted error string takes a lot of work.

-- System Information:
Debian Release: lenny/sid
   APT prefers unstable
   APT policy: (500, 'unstable')
Architecture: i386 (i686)



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Bug#444448: ITP: twiki-ldapcontrib -- LDAP services for TWiki

2007-10-05 Thread Jeremiah Foster

Package: wnpp
Severity: wishlist


Hi.

I look forward to seeing this in debian.


Bug#442113: ITP: libxml-xpathengine-perl -- re-usable XPath engine for DOM-like trees

2007-09-13 Thread Jeremiah Foster

Please see bug #441851

http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=441851

On Sep 13, 2007, at 10:48 AM, David Paleino wrote:


Package: wnpp
Severity: wishlist
Owner: David Paleino [EMAIL PROTECTED]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

* Package name: libxml-xpathengine-perl
  Version : 0.08
  Upstream Author : Michel Rodriguez [EMAIL PROTECTED]
* URL : http://search.cpan.org/~mirod/XML- 
XPathEngine-0.08/

* License : Perl-like (GNU GPL - Artistic)
  Programming Lang: Perl
  Description : re-usable XPath engine for DOM-like trees

This module provides an XPath engine, that can be re-used by other
module/classes that implement trees.
In order to use the XPath engine, nodes in the user module need to
mimick DOM nodes. The degree of similitude between the user tree and
a DOM dictates how much of the XPath features can be used. A module
implementing all of the DOM should be able to use this module very
easily (you might need to add the cmp method on nodes in order to get
ordered result sets).
..
Homepage: http://search.cpan.org/~mirod/XML-XPathEngine-0.08/

- -- System Information:
Debian Release: unstable/experimental
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 2.6.20 (SMP w/2 CPU cores)
Locale: LANG=it_IT.UTF-8, LC_CTYPE=it_IT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

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Bug#279778: ITP: libcdk-perl Curses Development Kit for Perl

2007-08-09 Thread Jeremiah Foster

Package: wnpp
Severity: normal

Hello BTS!

This is Jeremiah Foster saying I am interested in adopting libcdk- 
perl -- Curses Development Kit for Perl.


I have injected the package into the subversion repository at pkg- 
perl and am working to fix the last lintian error.


Thanks!

Jeremiah Foster
jeremiah at jeremiahfoster dot com

Key fingerprint = 9616 2AD3 3AE0 502C BD75  65ED BDC3 0D44 2F5A E672


Bug#279778: wnpp bug retitle

2007-08-09 Thread Jeremiah Foster

retitle 279778 ITA: libcdk-perl Curses Development Kit for Perl

Please see my earlier email.

Jeremiah



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Bug#436154: ITA: libcdk-perl -- Curses Development Kit for Perl (Bug #279778)

2007-08-05 Thread Jeremiah Foster

Package: wnpp
Severity: normal

Hello BTS!

This is Jeremiah Foster saying I am interested in adopting libcdk- 
perl -- Curses Development Kit for Perl. I try to follow the debian- 
perl list (where I will look for a sponsor) and I hope to have a  
package ready shortly.


Thanks!

Jeremiah Foster
jeremiah at jeremiahfoster dot com

Key fingerprint = 9616 2AD3 3AE0 502C BD75  65ED BDC3 0D44 2F5A E672




Bug#435399: ITP: librcs-perl -- Front end to revision control utilities for per

2007-07-31 Thread Jeremiah Foster

Package: wnpp
Severity: normal

My name is Jeremiah Foster and I am interested in packaging this  
software for debian.


Package: librcs-perl
Binary: librcs-perl
Version: 1.05-1
Priority: optional
Section: perl
Maintainer: Matt Hope [EMAIL PROTECTED]
Build-Depends-Indep: debhelper (= 4), cdbs (= 0.4), perl (= 5.8.0)
Architecture: all
Standards-Version: 3.5.10.0
Format: 1.0
Directory: pool/main/libr/librcs-perl
Files:
 5334636a9fbf45029632774bc3fa8e5e 605 librcs-perl_1.05-1.dsc
 f3466fe6cef54f8780d753fa0995b0ac 37033 librcs-perl_1.05.orig.tar.gz
 a6d9aa446977a1770353e74c80bfe2bd 1072 librcs-perl_1.05-1.diff.gz

Package: librcs-perl
Priority: optional
Section: perl
Installed-Size: 112
Maintainer: Matt Hope [EMAIL PROTECTED]
Architecture: all
Version: 1.05-1
Depends: rcs, perl (= 5.6.0-16)
Filename: pool/main/libr/librcs-perl/librcs-perl_1.05-1_all.deb
Size: 18624
MD5sum: 7d54bcc16b91b00717b838f55c149ad2
SHA1: 23a241c140701ed0cbb7657c0a35d398a69c072e
SHA256: 250dd1f4224460b24cd6358106cf6fb791e93f547750cf68c7471dcbdcc87efc
Description: Front end to revision control utilities for perl
 This Perl module provides an object oriented interface to access
 Revision Control System (RCS) utilities.
Tag: langdevel::perl, made-of::lang:perl



Bug#156532: IRA: swedish -- The Swedish dictionary for ispell.

2006-07-20 Thread Jeremiah Foster
Package: wnpp   
Version: N/A, reported 2006-07-20   Severity: normal

My name is Jeremiah Foster and I am an American living in Sweden. I
would like to adopt this package and maintain it for debian.

/Jeremiah



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