RE: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Jain, Ritika 
I still cannot get it to load the AggregatePlainTextFastUMLSProcessor, but I 
have a question - the umls support says that the end point to validate the user 
is not a valid api, then how is it working for others? Are you all changing the 
umlsaddress in the dictionary xml? 

Ritika

-Original Message-
From: Dligach, Dmitriy  
Sent: Friday, July 20, 2018 1:18 AM
To: cTAKES Developer list 
Subject: Re: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Ritika,

We had similar issues back in February (you can search the email archive). I 
was under impression that this happened when multiple instances of cTAKES were 
run on the same machine under different user names. A couple of times we were 
able to fix this problem by cleaning out a bunch of files from /tmp (such as 
conn.xml), but that “fix” stopped working at some problem. We weren’t able to 
determine the root cause of this problem...

Ultimately, we replaced CentOS with Ubuntu on that machine and the problem went 
away for good.

Best,

Dima



On Jul 19, 2018, at 06:09, Finan, Sean 
mailto:sean.fi...@childrens.harvard.edu>> 
wrote:

Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika mailto:ritika.j...@philips.com>>
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,858 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,860 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,864 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,865 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,867 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,870 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,873 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,875 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search

Re: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Dligach, Dmitriy 
Hi Ritika,

We had similar issues back in February (you can search the email archive). I 
was under impression that this happened when multiple instances of cTAKES were 
run on the same machine under different user names. A couple of times we were 
able to fix this problem by cleaning out a bunch of files from /tmp (such as 
conn.xml), but that “fix” stopped working at some problem. We weren’t able to 
determine the root cause of this problem...

Ultimately, we replaced CentOS with Ubuntu on that machine and the problem went 
away for good.

Best,

Dima



On Jul 19, 2018, at 06:09, Finan, Sean 
mailto:sean.fi...@childrens.harvard.edu>> 
wrote:

Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika mailto:ritika.j...@philips.com>>
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,858 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,860 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,864 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,865 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,867 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,870 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,873 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,875 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,877 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,880 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,890 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,892 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,895 DEBUG

Re: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread satyananda sahu 
Hi Ritika,

You can try logging in to https://uts.nlm.nih.gov/home.html using your
userid and password, if it works then your userid and password is valid for
umls.


Thanks,
Satya



On Thu, Jul 19, 2018 at 4:59 PM, Jain, Ritika 
wrote:

> I have configured the password in both the places - xml and as
> environmental variable.
> Another thing to notice is that if I hit the API that ctakes is using to
> valiate the user using postman ( web debugger) I still get a false --
>
> POST https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser
>
> BODY: licenseCode=NLM-3495749
> user=ritikajain
> password=XX
>
>
> and I still a false.
>
> You can also try hitting the API with a vaild UMLS license with postman,
> and hopefully it should give a false
>
> Ritika
>
>
>
> -Original Message-
> From: Miller, Timothy 
> Sent: Thursday, July 19, 2018 4:55 PM
> To: dev@ctakes.apache.org
> Subject: Re: Cannot authenticate license on REST API TRACKING:000308016
> [EXTERNAL]
>
> Are you providing your password via the xml descriptor file or an
> environment variable? The only thing I can think of is that there might be
> some misformatting in the xml, like an extra trailing space/newline in the
> field where one of the username/password goes.
> Tim
>
> 
> From: Jain, Ritika 
> Sent: Thursday, July 19, 2018 7:15 AM
> To: dev@ctakes.apache.org
> Subject: RE: Cannot authenticate license on REST API TRACKING:000308016
> [EXTERNAL]
>
> Hi Sean
>
> See this reply from UMLS support
>
>
> That endpoint (documented here:https://emea01.safelinks.
> protection.outlook.com/?url=https%3A%2F%2Furldefense.
> proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__emea01.safelinks.
> protection.outlook.com_-3Furl-3Dhttps-253A-252F-
> 252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-
> 253Dhttps-2D3A-5F-5Futs.nlm.nih.gov-5Fhelp-5Flicense-
> 5Fvalidateumlsuserhelp.html-2526d-253DDwIFAg-2526c-253DqS4goWBT7poplM69zy-
> 5F3xhKwEW14JZMSdioCoppxeFU-2526r-253Dfs67GvlGZstTpyIisCYNYmQCP6
> r0bcpKGd4f7d4gTao-2526m-253DfQiwb4h2SxUTGfMyinBlOo9wdb
> QdJuM3zugwflzf1F8-2526s-253DuO0nsPPev-2DybnYKedCLy-
> 5F4HwS1GZsf7u-2D8H5w2UOyek-2526e-26amp-3Bdata-3D02-257C01-257C-
> 257C032497f07be34e9a6b3908d5ecd6787f-257C1a407a2d76754d178692b3ac28
> 5306e4-257C0-257C0-257C636675328259370278-26amp-3Bsdata-
> 3DkRL2rxurzA6WxsuiSYm9zRwvVeaMAys3dXFcbR1y-252BZc-253D-
> 26amp-3Breserved-3D0-3D%26d%3DDwIFAg%26c%3DqS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU%26r%3Dfs67GvlGZstTpyIisCYNYmQCP6r0
> bcpKGd4f7d4gTao%26m%3DGqHa003bWO-wQ-O5I0ufpc_LJHggfChk83dWdrndMS4%26s%3D-
> bDdjhQcUbADrAh24ci4iuJtNAILeTUJ7wYnpPORBQU%26edata=02%7C01%7C%
> 7C2cb58d890ef94c7aa76408d5ece0669d%7C1a407a2d76754d178692b3ac2853
> 06e4%7C0%7C0%7C636675370907437611sdata=MAlPCxcpI%2F5QX92datNpg%
> 2BfZjSyb9IBRl%2FE7q9mevzw%3Dreserved=0=
> )
> is not meant for end users, so it will not work with your license code and
> username.
>
>
> The ctakes CVD uses the same end point ( also, pointed out in the logs I
> shared).
>
> Regards,
> Ritika
>
> -Original Message-
> From: Finan, Sean 
> Sent: Thursday, July 19, 2018 4:39 PM
> To: dev@ctakes.apache.org
> Subject: Re: Cannot authenticate license on REST API TRACKING:000308016
> [EXTERNAL]
>
> Hi Ritika,
>
> I am glad that adding your proxy information got you one step closer to a
> working configuration.  However, I cannot say why your password isn't being
> properly validated.  If you can reach the umls server and your credentials
> are correct then the umls server should reply positively and ctakes should
> let the pipeline continue.
>
> Does anybody else on the devlist have any ideas?
>
> Sean
> 
> From: Jain, Ritika 
> Sent: Thursday, July 19, 2018 5:06 AM
> To: dev@ctakes.apache.org
> Subject: RE: Cannot authenticate license on REST API TRACKING:000308016
> [EXTERNAL]
>
> I can get it working adding proxy parameters in the java command, now I do
> not get the connection timeout, but a different error that the user is not
> valid. If you follow the email chain below, the support person from UMLS
> says that my user is a valid user and the account user to validate the user
> is not for end point users.
>
> Can you help me with this?
>
>
>
> 14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required
> fields []
> 14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class
> java.lang.String] using property editor [org.apache.uima.fit.internal.
> propertyeditors.GetAsTextStringEditor@39c6fd02]
> 14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class
> java.lang.String] using property editor [org.apache.uima.fit.internal.
> propertyeditors.GetAsTextStringEditor@39c6fd02]
> 14:29:06,072 INFO  [Chunker] Chunker model file: org/apache/ctakes/chunker/
> models/chunker-model.zip
> 14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required
> fields []
> 14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing
>

RE: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Jain, Ritika 
I have configured the password in both the places - xml and as environmental 
variable. 
Another thing to notice is that if I hit the API that ctakes is using to 
valiate the user using postman ( web debugger) I still get a false --

POST https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser

BODY: licenseCode=NLM-3495749
user=ritikajain
password=XX


and I still a false. 

You can also try hitting the API with a vaild UMLS license with postman, and 
hopefully it should give a false 

Ritika



-Original Message-
From: Miller, Timothy  
Sent: Thursday, July 19, 2018 4:55 PM
To: dev@ctakes.apache.org
Subject: Re: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Are you providing your password via the xml descriptor file or an environment 
variable? The only thing I can think of is that there might be some 
misformatting in the xml, like an extra trailing space/newline in the field 
where one of the username/password goes.
Tim


From: Jain, Ritika 
Sent: Thursday, July 19, 2018 7:15 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Sean

See this reply from UMLS support


That endpoint (documented here:
https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__emea01.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttps-2D3A-5F-5Futs.nlm.nih.gov-5Fhelp-5Flicense-5Fvalidateumlsuserhelp.html-2526d-253DDwIFAg-2526c-253DqS4goWBT7poplM69zy-5F3xhKwEW14JZMSdioCoppxeFU-2526r-253Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao-2526m-253DfQiwb4h2SxUTGfMyinBlOo9wdbQdJuM3zugwflzf1F8-2526s-253DuO0nsPPev-2DybnYKedCLy-5F4HwS1GZsf7u-2D8H5w2UOyek-2526e-26amp-3Bdata-3D02-257C01-257C-257C032497f07be34e9a6b3908d5ecd6787f-257C1a407a2d76754d178692b3ac285306e4-257C0-257C0-257C636675328259370278-26amp-3Bsdata-3DkRL2rxurzA6WxsuiSYm9zRwvVeaMAys3dXFcbR1y-252BZc-253D-26amp-3Breserved-3D0-3D%26d%3DDwIFAg%26c%3DqS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU%26r%3Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao%26m%3DGqHa003bWO-wQ-O5I0ufpc_LJHggfChk83dWdrndMS4%26s%3D-bDdjhQcUbADrAh24ci4iuJtNAILeTUJ7wYnpPORBQU%26edata=02%7C01%7C%7C2cb58d890ef94c7aa76408d5ece0669d%7C1a407a2d76754d178692b3ac285306e4%7C0%7C0%7C636675370907437611sdata=MAlPCxcpI%2F5QX92datNpg%2BfZjSyb9IBRl%2FE7q9mevzw%3Dreserved=0=
)
is not meant for end users, so it will not work with your license code and 
username.


The ctakes CVD uses the same end point ( also, pointed out in the logs I 
shared).

Regards,
Ritika

-Original Message-
From: Finan, Sean 
Sent: Thursday, July 19, 2018 4:39 PM
To: dev@ctakes.apache.org
Subject: Re: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika 
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor

Re: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Miller, Timothy 
Are you providing your password via the xml descriptor file or an environment 
variable? The only thing I can think of is that there might be some 
misformatting in the xml, like an extra trailing space/newline in the field 
where one of the username/password goes.
Tim


From: Jain, Ritika 
Sent: Thursday, July 19, 2018 7:15 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Sean

See this reply from UMLS support


That endpoint (documented here:
https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__emea01.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttps-2D3A-5F-5Futs.nlm.nih.gov-5Fhelp-5Flicense-5Fvalidateumlsuserhelp.html-2526d-253DDwIFAg-2526c-253DqS4goWBT7poplM69zy-5F3xhKwEW14JZMSdioCoppxeFU-2526r-253Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao-2526m-253DfQiwb4h2SxUTGfMyinBlOo9wdbQdJuM3zugwflzf1F8-2526s-253DuO0nsPPev-2DybnYKedCLy-5F4HwS1GZsf7u-2D8H5w2UOyek-2526e-26amp-3Bdata-3D02-257C01-257C-257C032497f07be34e9a6b3908d5ecd6787f-257C1a407a2d76754d178692b3ac285306e4-257C0-257C0-257C636675328259370278-26amp-3Bsdata-3DkRL2rxurzA6WxsuiSYm9zRwvVeaMAys3dXFcbR1y-252BZc-253D-26amp-3Breserved-3D0-3D%26d%3DDwIFAg%26c%3DqS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU%26r%3Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao%26m%3DGqHa003bWO-wQ-O5I0ufpc_LJHggfChk83dWdrndMS4%26s%3D-bDdjhQcUbADrAh24ci4iuJtNAILeTUJ7wYnpPORBQU%26edata=02%7C01%7C%7C2cb58d890ef94c7aa76408d5ece0669d%7C1a407a2d76754d178692b3ac285306e4%7C0%7C0%7C636675370907437611sdata=MAlPCxcpI%2F5QX92datNpg%2BfZjSyb9IBRl%2FE7q9mevzw%3Dreserved=0=
)
is not meant for end users, so it will not work with your license code and 
username.


The ctakes CVD uses the same end point ( also, pointed out in the logs I 
shared).

Regards,
Ritika

-Original Message-
From: Finan, Sean 
Sent: Thursday, July 19, 2018 4:39 PM
To: dev@ctakes.apache.org
Subject: Re: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika 
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG

RE: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Jain, Ritika 
Hi Sean

See this reply from UMLS support 


That endpoint (documented here:
https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__emea01.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttps-2D3A-5F-5Futs.nlm.nih.gov-5Fhelp-5Flicense-5Fvalidateumlsuserhelp.html-2526d-253DDwIFAg-2526c-253DqS4goWBT7poplM69zy-5F3xhKwEW14JZMSdioCoppxeFU-2526r-253Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao-2526m-253DfQiwb4h2SxUTGfMyinBlOo9wdbQdJuM3zugwflzf1F8-2526s-253DuO0nsPPev-2DybnYKedCLy-5F4HwS1GZsf7u-2D8H5w2UOyek-2526e-26amp-3Bdata-3D02-257C01-257C-257C032497f07be34e9a6b3908d5ecd6787f-257C1a407a2d76754d178692b3ac285306e4-257C0-257C0-257C636675328259370278-26amp-3Bsdata-3DkRL2rxurzA6WxsuiSYm9zRwvVeaMAys3dXFcbR1y-252BZc-253D-26amp-3Breserved-3D0-3D%26d%3DDwIFAg%26c%3DqS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU%26r%3Dfs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao%26m%3DGqHa003bWO-wQ-O5I0ufpc_LJHggfChk83dWdrndMS4%26s%3D-bDdjhQcUbADrAh24ci4iuJtNAILeTUJ7wYnpPORBQU%26edata=02%7C01%7C%7C2cb58d890ef94c7aa76408d5ece0669d%7C1a407a2d76754d178692b3ac285306e4%7C0%7C0%7C636675370907437611sdata=MAlPCxcpI%2F5QX92datNpg%2BfZjSyb9IBRl%2FE7q9mevzw%3Dreserved=0=
)
is not meant for end users, so it will not work with your license code and 
username.


The ctakes CVD uses the same end point ( also, pointed out in the logs I 
shared).  

Regards,
Ritika

-Original Message-
From: Finan, Sean  
Sent: Thursday, July 19, 2018 4:39 PM
To: dev@ctakes.apache.org
Subject: Re: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika 
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,858 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,860 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,864 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,865 DEBUG [StandardEnvironment] Adding [systemProperties]

Re: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Finan, Sean 
Hi Ritika,

I am glad that adding your proxy information got you one step closer to a 
working configuration.  However, I cannot say why your password isn't being 
properly validated.  If you can reach the umls server and your credentials are 
correct then the umls server should reply positively and ctakes should let the 
pipeline continue.

Does anybody else on the devlist have any ideas?

Sean

From: Jain, Ritika 
Sent: Thursday, July 19, 2018 5:06 AM
To: dev@ctakes.apache.org
Subject: RE: Cannot authenticate license on REST API TRACKING:000308016 
[EXTERNAL]

I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users.

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,858 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,860 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,864 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,865 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,867 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,870 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,873 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,875 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,877 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,880 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,890 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,892 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,895 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,897 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,902 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,903 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,906 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,910 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,919 TRACE [TypeConverterDelegate] Converting String to [int]

RE: Cannot authenticate license on REST API TRACKING:000308016 [EXTERNAL]

2018-07-19 Thread Jain, Ritika 
I can get it working adding proxy parameters in the java command, now I do not 
get the connection timeout, but a different error that the user is not valid. 
If you follow the email chain below, the support person from UMLS says that my 
user is a valid user and the account user to validate the user is not for end 
point users. 

Can you help me with this?



14:29:06,054 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:06,060 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,067 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@39c6fd02]
14:29:06,072 INFO  [Chunker] Chunker model file: 
org/apache/ctakes/chunker/models/chunker-model.zip
14:29:07,745 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,746 INFO  [TokenizerAnnotatorPTB] Initializing 
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
14:29:07,756 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,770 INFO  [ContextDependentTokenizerAnnotator] Finite state machines 
loaded.
14:29:07,778 DEBUG [DataBinder] DataBinder requires binding of required fields 
[]
14:29:07,779 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,782 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,785 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,792 TRACE [TypeConverterDelegate] Converting String to [class 
java.lang.String] using property editor 
[org.apache.uima.fit.internal.propertyeditors.GetAsTextStringEditor@725e7dcc]
14:29:07,854 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,857 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,858 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,860 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,864 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,865 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,867 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,870 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,873 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,875 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,877 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,880 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,890 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,892 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,895 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,897 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,902 DEBUG [StandardEnvironment] Initializing new StandardEnvironment
14:29:07,903 DEBUG [StandardEnvironment] Adding [systemProperties] 
PropertySource with lowest search precedence
14:29:07,906 DEBUG [StandardEnvironment] Adding [systemEnvironment] 
PropertySource with lowest search precedence
14:29:07,910 DEBUG [StandardEnvironment] Initialized StandardEnvironment with 
PropertySources [systemProperties,systemEnvironment]
14:29:07,919 TRACE [TypeConverterDelegate] Converting String to [int] using 
property editor 
[org.springframework.beans.propertyeditors.CustomNumberEditor@22ab1e2b]
14:29:07,923 INFO  [AbstractJCasTermAnnotator] Using dictionary lookup window 
type: org.apache.ctakes.typesystem.type.textspan.Sentence
14:29:07,934 INFO  [AbstractJCasTermAnnotator] Exclusion tagset loaded: CC CD 
DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS 
WRB 
14:29:07,937 INFO  [AbstractJCasTermAnnotator] Using minimum term text span: 3
14:29:07,940 INFO  [AbstractJCasTermAnnotator] Using Dictionary Descriptor: 
org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml