[Dspace-tech] XMLUI caching, recommended mod_expires settings?

2013-01-29 Thread Alan Orth
All,

We've been on and off battling with excessive XMLUI caching in our 
DSpace environment.  It seems the server-side issue is less rampant 
since 1.8.x introduced the ability to clear the Cocoon cache from the 
Control Panel.  Now we're attempting to solve the client-side caching 
issue, and I'd like to know what settings other people are using.  Our 
environment uses Apache httpd in front of Tomcat, so we put this in our 
DSpace virtual host:

 ### See: http://httpd.apache.org/docs/2.2/mod/mod_expires.html
 # Turn on Expires and set default to 1
 IfModule mod_expires.c
 ExpiresActive On
 ExpiresDefault A1
 /IfModule

I'm wondering if Access +1 second is a bit overzealous.  Perhaps we 
should be using the modification time of the file (CSS or GIF, for 
example).  What are you guys using?

Thanks!

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Re: [Dspace-tech] Fwd: need help

2013-01-29 Thread helix84
Hi Ashapurna,

Try running one of these commands on your DSpace machine to verify
that you can connect to Maven Central:
wget http://repo1.maven.org/maven2/org/dspace/dspace-pom/10/dspace-pom-10.pom
or
curl http://repo1.maven.org/maven2/org/dspace/dspace-pom/10/dspace-pom-10.pom

Do you need to use a proxy server to connect to the internet from this machine?


Regards,
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Re: [Dspace-tech] [KE1019161] Using dspace script with JNDI ?

2013-01-29 Thread Marco Weiß
Hi Helix,

no not though a local firewall. The firewall between the DMZ and the Database 
net.
I have now requested the firewall administrative to enable the needed port but 
I have to test it.

So thank you for support and idea on this topic to you and Mark!

Btw. The JNDI configuration is working well!

Have a nice day
Marco


-Ursprüngliche Nachricht-
Von: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] Im Auftrag von helix84
Gesendet: Dienstag, 22. Januar 2013 16:34
An: marco.we...@kesslernetworks.de
Cc: Dspace Tech
Betreff: Re: [Dspace-tech] [KE1019161] Using dspace script with JNDI ?

On Tue, Jan 22, 2013 at 4:03 PM,  marco.we...@kesslernetworks.de wrote:
  url=jdbc:postgresql://127.0.0.1:5432/dspace

 What can i do if i have to go through a SPI Firewall that allows me 
 only to connect if it is a tomcat connection configured as JNDI?

You have to go via firewall to get to localhost? Oh, well.

As you probably know, the problem is that you don't have db.username (and 
others) set in dspace.cfg.
Can't you just enable this? (see the comment above it) db.jndi = jdbc/dspace

If not, try looking here and see if any of it helps:
http://stackoverflow.com/questions/1615417/out-of-container-jndi-data-source


Regards,
~~helix84

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[Dspace-tech] Top 10 item downloads.

2013-01-29 Thread Hilton Gibson
Hi Helix

I am on the tech list now.

Was:

wget 
http://localhost/solr/statistics/select?indent=onversion=2.2start=0rows=10fl=*%2Cscoreqt=standardwt=standardexplainOther=hl.fl=q=type:0;
-O response.xml

How do I extract handles from the XML file.

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[Dspace-tech] Funder data in Metadata ?

2013-01-29 Thread David Palmer
We want to show funder data in the publication records in DSpace.  On one
record, there could be multiple grant names from the same funder, two or
more funders on the same publication, two or more grant numbers, etc.  If we
have 4 separate DC fields for,
Funder
Grant Name
Grant number
Note
DC metadata then cannot show which grant name belongs to which funder, which
grant number belongs to which grant name, etc.

Give up on DC metadata for this?  We made this record showing our intent.
It uses a control number to look up data on an outside table holding the
data, bringing the data into the DSpace publication item on-the-fly.
[scroll to bottom]
http://hub.hku.hk/handle/10722/68168

Is there a way to do this better?

David Palmer
Associate University Librarian
The University of Hong Kong Libraries
10/F, Kennedy Town Centre
23 Belcher's Street
Kennedy Town
Hong Kong
tel. +852 3921 2921
http://hub.hku.hk/rp/rp1


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Re: [Dspace-tech] [Dspace-general] Funder data in Metadata ?

2013-01-29 Thread helix84
Hi David,

unfortunately, the order of values of a single metadata field is not
defined. That said, I didn't encounter a case where DSpace would not
preserve them in the order we put them in, but this can depend on
several things including the underlying database. So you can just
reply on that and see how it works out, but I wouldn't recommend it.

I think what I'd do is store an XML tree fragment with all the values
belonging together into a single metadata field, something like this:
funderThe Funder/fundergrant-nameGrant
Name/grant-namegrant-numberGrant
number/grant-numbernoteNote/note
Of course, you can still put in multiple such metadata values in case
you have multiple funding sources.

Unfortunately you're not using XMLUI, but in XMLUI it's trivial to
extract and display the individual element values. In JSPUI, there
would be an extra step but I guess a clever JSP tag would do the
trick.


Regards,
~~helix84

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[Dspace-tech] DSpace 3.0 Ingestion Performance Benchmarks

2013-01-29 Thread Lighton Phiri
I am conducting a couple of performance benchmarks and currently working 
towards ingesting ~2million metadata-only items into a DSpace 3.0 
instance. One of things I intend to do is benchmark the ingestion 
process and I was hoping someone could help with the following queries:

1. I am guessing the Batch Metadata Editing [1] tool is appropriate in 
this context as opposed to using Simple Archive Format [2]; Yes?
2. Are experiments conducted to come up with the recommended line limit 
size of 1k specified here [2] documented anywhere and are there factors 
I should consider that could have a baring on this limit? In other 
workds, is the 1k size a standard of some sort?
3. Are there any other documented scalability performance benchmarks 
other than this [3]?

I'd also appreciate any other comments/suggestions.

[1] 
https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing#BatchMetadataEditing-AddingMetadata-OnlyItems
[2] 
https://wiki.duraspace.org/display/DSDOC3x/Importing+and+Exporting+Items+via+Simple+Archive+Format
[3] http://archive.nlm.nih.gov/pubs/ceb2008/2008016.pdf

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Re: [Dspace-tech] Top 10 item downloads.

2013-01-29 Thread helix84
Like I wrote back on dspace-general, handles are not stored in this
response and need to be looked up in the database.

Just noting this for later experimentation (for myself, really) - it
seems database queries/tables can be easily exported as XML from
Postgres:
http://www.postgresql.org/docs/8.4/interactive/functions-xml.html#FUNCTIONS-XML-MAPPING

That would enable a fully XSLT-based solution (e.g. for XMLUI themes).


Regards,
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Re: [Dspace-tech] DSpace 3.0 Ingestion Performance Benchmarks

2013-01-29 Thread helix84
Hi Lighton,

I don't know of any such work done as of yet. I definitely would be
interested in your results/findings and surely others would be, too.
Could you create a wiki page afterwards?

On Tue, Jan 29, 2013 at 12:09 PM, Lighton Phiri lighton.ph...@gmail.com wrote:
 1. I am guessing the Batch Metadata Editing [1] tool is appropriate in
 this context as opposed to using Simple Archive Format [2]; Yes?

I think that's up to the implementation of BME. Theoretically, it
should be faster because it deals with less file opening. I think
determining whether this is true will be one of your results.

I'm not sure if it is, but the CSV implementation should be streaming,
i.e. not requiring to keep the whole CSV in memory at once, processing
it line-by-line instead. That will have the largest impact on memory
usage.

 2. Are experiments conducted to come up with the recommended line limit
 size of 1k specified here [2] documented anywhere and are there factors
 I should consider that could have a baring on this limit? In other
 workds, is the 1k size a standard of some sort?

The limit is there only for web UIs, not the command line. The reason
is you don't want to upload a huge CSV file using a browser (and be
frustrated when it fails when you lose connection in the middle). Also
UIs display a diff of changes, giving you a chance to review and
confirm/cancel them. This could produce a huge HTML page which is
clearly not desirable. Command line doesn't have any such limitations
apart from practical ones, like memory consumed.

 3. Are there any other documented scalability performance benchmarks
 other than this [3]?

Not that I know of, I'd just use Google as you did.

 I'd also appreciate any other comments/suggestions.

If you're doing a comparison, could you also include AIPs?


Regards,
~~helix84

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Re: [Dspace-tech] Top 10 item downloads.

2013-01-29 Thread Hilton Gibson
Ok. I am assuming then the response has item id's which I can look up via
the XMLUI.
Is it the:
arr name=owningItem
int19989/int
/arr

OR

int name=id52613/int

Cheers

hg


On 29 January 2013 13:17, helix84 heli...@centrum.sk wrote:

 Like I wrote back on dspace-general, handles are not stored in this
 response and need to be looked up in the database.

 Just noting this for later experimentation (for myself, really) - it
 seems database queries/tables can be easily exported as XML from
 Postgres:

 http://www.postgresql.org/docs/8.4/interactive/functions-xml.html#FUNCTIONS-XML-MAPPING

 That would enable a fully XSLT-based solution (e.g. for XMLUI themes).


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette




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Re: [Dspace-tech] Top 10 item downloads.

2013-01-29 Thread helix84
That's correct. I'd write the XSL for you, I just don't have the time right now.

You didn't tell me what you'd like the final output to be. Part of a
page in XMLUI? Separate HTML file? CSV?


Regards,
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Re: [Dspace-tech] Top 10 item downloads.

2013-01-29 Thread Hilton Gibson
Simple text to add to a wiki page for now.


On 29 January 2013 13:37, helix84 heli...@centrum.sk wrote:

 That's correct. I'd write the XSL for you, I just don't have the time
 right now.

 You didn't tell me what you'd like the final output to be. Part of a
 page in XMLUI? Separate HTML file? CSV?


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette




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Re: [Dspace-tech] [Dspace-general] Funder data in Metadata ?

2013-01-29 Thread Andrea Bollini
Hi David,
you only need to store the item-grant(s) relation in the item metadata. 
DSpace supports linking of entities through the authority framework, so 
you should have
metadata= something like dc.relation.grant
text_value=Textual description of the grant including all the details 
that you like to make easily searchable and exportable through OAI-PMH, 
etc.
authority=the ID of the grant to use to lookup in the separate table; as 
you are using the dspace-cris module this should be the public ID of the 
Grant/Project (pj07862
http://hub.hku.hk/rp/grants/details.htm?id=7862 / please note that as 
you are still using a custom version of the DSpace-CRIS module the 
public ID is not yet exposed in your UI).

In the item display page you can use a custom display strategy that 
using the value stored in the authority column will show more rich 
information about the grant. In the grant page the item will be shown 
without any need to put directly reference to it in the grant metadata 
in the same way that items are shown in the researcher page.
Hope this help,
Andrea

Il 29/01/2013 10:43, David Palmer ha scritto:
 We want to show funder data in the publication records in DSpace.  On one
 record, there could be multiple grant names from the same funder, two or
 more funders on the same publication, two or more grant numbers, etc.  If we
 have 4 separate DC fields for,
   Funder
   Grant Name
   Grant number
   Note
 DC metadata then cannot show which grant name belongs to which funder, which
 grant number belongs to which grant name, etc.

 Give up on DC metadata for this?  We made this record showing our intent.
 It uses a control number to look up data on an outside table holding the
 data, bringing the data into the DSpace publication item on-the-fly.
 [scroll to bottom]
   http://hub.hku.hk/handle/10722/68168

 Is there a way to do this better?

 David Palmer
 Associate University Librarian
 The University of Hong Kong Libraries
 10/F, Kennedy Town Centre
 23 Belcher's Street
 Kennedy Town
 Hong Kong
 tel. +852 3921 2921
 http://hub.hku.hk/rp/rp1


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[Dspace-tech] Changing the location of dspace css files

2013-01-29 Thread Thomas Misilo
Hi,

I am trying to change the location of the CSS files so I can put them on 
another server, and be able to customize them without rebuilding tomcat all the 
time. When I tried changing it in my sitemap it added 
/themes/themename/http://url/lib/css/*.css

Thank in advance,

Tom

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[Dspace-tech] Uploading Bibliographic information from RefWorks

2013-01-29 Thread Thomas Misilo
Hi,

I was wondering if anyone has used the new bibliographic upload for DSpace 3.0 
yet with a refworks bibtex file?

Below is what I have tried, and the ouput I got. If you want the refworks 
bibtex file, I can
dspace import -b -m refworks-map.map -e misi...@fit.edu -c 123456789/6856 -s 
refworkstest.txt -i bibtex
INFO [main] (DSpaceKernelInit.java:52) - Created new kernel: 
DSpaceKernel:org.dspace:name=cf20d3c4-227c-4adb-82da-1def97a034c7,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null
INFO [main] (ConfigurationManager.java:1224) - Loading from classloader: 
file:/srv/dspace/config/dspace.cfg
INFO [main] (ConfigurationManager.java:1224) - Using dspace provided log 
configuration (log.init.config)
INFO [main] (ConfigurationManager.java:1224) - Loading: 
/srv/dspace/config/log4j.properties
Destination collections:
Owning  Collection: Bibupload Holding
INFO: Dataloader 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader@6d1a0d35 will 
be used for the import!
Started: 1359477659086
Ended: 1359477660013
Elapsed time: 0 secs (927 msecs)
Exception: Lexical error at line 1, column 79.  Encountered: \u03b7 (951), 
after : 
org.jbibtex.TokenMgrError: Lexical error at line 1, column 79.  Encountered: 
\u03b7 (951), after : 
at 
org.jbibtex.LaTeXParserTokenManager.getNextToken(LaTeXParserTokenManager.java:303)
at org.jbibtex.LaTeXParser.jj_scan_token(LaTeXParser.java:408)
at org.jbibtex.LaTeXParser.jj_3R_6(LaTeXParser.java:270)
at org.jbibtex.LaTeXParser.jj_3_3(LaTeXParser.java:253)
at org.jbibtex.LaTeXParser.jj_2_3(LaTeXParser.java:242)
at org.jbibtex.LaTeXParser.String(LaTeXParser.java:190)
at org.jbibtex.LaTeXParser.Object(LaTeXParser.java:66)
at org.jbibtex.LaTeXParser.ObjectList(LaTeXParser.java:46)
at org.jbibtex.LaTeXParser.LaTeX(LaTeXParser.java:21)
at org.jbibtex.LaTeXParser.parse(LaTeXParser.java:16)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.parseLaTeX(BibTexDataLoader.java:169)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.loadData(BibTexDataLoader.java:132)
at 
gr.ekt.transformationengine.core.TransformationEngine.transform(TransformationEngine.java:111)
at org.dspace.app.itemimport.ItemImport.addBTEItems(ItemImport.java:649)
at org.dspace.app.itemimport.ItemImport.main(ItemImport.java:575)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183)



I was able to load the data via an EndNote export from RefWorks, however all it 
did was create the ~400 records, with all Unknown data.

Thanks for any help,

Tom
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[Dspace-tech] changing order of aspects

2013-01-29 Thread Lars Möller

hi list,

is it possible to change the order of the aspects in dspace 3.0?

i want to change the position in the theme mirage of the dri-options 
(css isn't a solution for that).
dri.options should appear in the source html before the content part 
(ds-body).

changing the order of the aspects in the xmlui.xconf file doesn't work.

many thanks for any ideas, hints, etc.
best
lars


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Re: [Dspace-tech] Uploading Bibliographic information from RefWorks

2013-01-29 Thread Thomas Misilo
I just tried using an RIS export from Proquest and the same thing happened. The 
record was created with no information from the RIS file. :-/

From: Thomas Misilo [mailto:misi...@fit.edu]
Sent: Tuesday, January 29, 2013 11:55 AM
To: dspace-tech@lists.sourceforge.net
Subject: [Dspace-tech] Uploading Bibliographic information from RefWorks

Hi,

I was wondering if anyone has used the new bibliographic upload for DSpace 3.0 
yet with a refworks bibtex file?

Below is what I have tried, and the ouput I got. If you want the refworks 
bibtex file, I can
dspace import -b -m refworks-map.map -e misi...@fit.edu -c 123456789/6856 -s 
refworkstest.txt -i bibtex
INFO [main] (DSpaceKernelInit.java:52) - Created new kernel: 
DSpaceKernel:org.dspace:name=cf20d3c4-227c-4adb-82da-1def97a034c7,type=DSpaceKernel:lastLoad=null:loadTime=0:running=false:kernel=null
INFO [main] (ConfigurationManager.java:1224) - Loading from classloader: 
file:/srv/dspace/config/dspace.cfg
INFO [main] (ConfigurationManager.java:1224) - Using dspace provided log 
configuration (log.init.config)
INFO [main] (ConfigurationManager.java:1224) - Loading: 
/srv/dspace/config/log4j.properties
Destination collections:
Owning  Collection: Bibupload Holding
INFO: Dataloader 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader@6d1a0d35 will 
be used for the import!
Started: 1359477659086
Ended: 1359477660013
Elapsed time: 0 secs (927 msecs)
Exception: Lexical error at line 1, column 79.  Encountered: \u03b7 (951), 
after : 
org.jbibtex.TokenMgrError: Lexical error at line 1, column 79.  Encountered: 
\u03b7 (951), after : 
at 
org.jbibtex.LaTeXParserTokenManager.getNextToken(LaTeXParserTokenManager.java:303)
at org.jbibtex.LaTeXParser.jj_scan_token(LaTeXParser.java:408)
at org.jbibtex.LaTeXParser.jj_3R_6(LaTeXParser.java:270)
at org.jbibtex.LaTeXParser.jj_3_3(LaTeXParser.java:253)
at org.jbibtex.LaTeXParser.jj_2_3(LaTeXParser.java:242)
at org.jbibtex.LaTeXParser.String(LaTeXParser.java:190)
at org.jbibtex.LaTeXParser.Object(LaTeXParser.java:66)
at org.jbibtex.LaTeXParser.ObjectList(LaTeXParser.java:46)
at org.jbibtex.LaTeXParser.LaTeX(LaTeXParser.java:21)
at org.jbibtex.LaTeXParser.parse(LaTeXParser.java:16)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.parseLaTeX(BibTexDataLoader.java:169)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.loadData(BibTexDataLoader.java:132)
at 
gr.ekt.transformationengine.core.TransformationEngine.transform(TransformationEngine.java:111)
at org.dspace.app.itemimport.ItemImport.addBTEItems(ItemImport.java:649)
at org.dspace.app.itemimport.ItemImport.main(ItemImport.java:575)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183)



I was able to load the data via an EndNote export from RefWorks, however all it 
did was create the ~400 records, with all Unknown data.

Thanks for any help,

Tom
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Re: [Dspace-tech] Changing the location of dspace css files

2013-01-29 Thread Andrea Schweer

  
  
Hi Thomas,

On 30/01/13 02:41, Thomas Misilo wrote:


  
  
  
  I am trying to change the location of
the CSS files so I can put them on another server, and be able
to customize them without rebuilding tomcat all the time. When I
tried changing it in my sitemap it added
/themes/themename/http://url/lib/css/*.css
  


You need to change your theme slightly -- by default, all
stylesheets in the sitemap are assumed to be local files. 

Assuming you're using Mirage or something based on Mirage, find the
page-structure.xsl file and look for a comment that reads "Add
stylsheets" (note the spelling). Change the xsl:for-each that
follows to what's below (if your external stylesheet is accessed via
https then you'll need to change the starts-with test accordingly).

 !-- Add stylsheets --
 xsl:for-each
select="/dri:document/dri:meta/dri:pageMeta/dri:metadata[@element='stylesheet']"
 link rel="stylesheet" type="text/css"
 xsl:attribute name="media"
 xsl:value-of select="@qualifier"/
 /xsl:attribute
 xsl:attribute name="href"
 xsl:if test="not(starts-with(text(),
'http'))"
 xsl:value-of
select="/dri:document/dri:meta/dri:pageMeta/dri:metadata[@element='contextPath'][not(@qualifier)]"/

xsl:text/themes//xsl:text
 xsl:value-of
select="/dri:document/dri:meta/dri:pageMeta/dri:metadata[@element='theme'][@qualifier='path']"/
 xsl:text//xsl:text
 /xsl:if
 xsl:value-of select="."/
 /xsl:attribute
 /link
 /xsl:for-each

This snippet prepends the context path + theme only if the css URL
doesn't start with "http".

cheers,
Andrea

-- 
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] How customize v 3.0 Discovery search filter drop-down labels

2013-01-29 Thread Charles Kinney
 mErRYo merryob...@yahoo.com wrote:

 Well i created new sidebar facet and search filter now which is working
fine.
 Steps mentioned in manual were right but the only problem i was facing
that it
 doesn't implicitly mention to rebuild solr index also, though it has solr
index maintenance topic after it.

 After doing editing in discovery.xml file i ran command i.e.
update-discovery-index with -b parameter
 to recreate my solr index and it worked fine after sometime i also ran
same command with -o parameter
 for solr search core optimization.

I echo the implied suggestion that the documentation expressly note the
need for or uses of update-discovery-index.

*update-discovery-index* *-f*  was recently useful for me. Via an sql update,
I corrected some data values in my postgresql database. The new values
showed up correctly in the Discovery facet only after reindexing with the
-f parameter, whereas reindexing without parameters or with -o or  -b
did not do so.
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Re: [Dspace-tech] Uploading Bibliographic information from RefWorks

2013-01-29 Thread Pottinger, Hardy J.
Hi, Thomas, we chatted briefly about this on IRC, I am mostly replying so
this response gets into the mail list archive, in case anyone else runs
into trouble. I have not yet tried to use the bibliographic import feature
of 3.0 yet (it's on our list of things to try soon, though). There is a
rather nice wiki page on the new feature here:

https://wiki.duraspace.org/pages/viewpage.action?pageId=32481931

As an alternative, you may also want to contact the contributor of the
feature (see https://jira.duraspace.org/BROWSE/DS-1226 for details).


--

University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
Debug only code. Comments lie.





On 1/29/13 10:55 AM, Thomas  Misilo misi...@fit.edu wrote:

Hi,
 
I was wondering if anyone has used the new bibliographic upload for
DSpace 3.0 yet with a refworks bibtex file?
 
Below is what I have tried, and the ouput I got. If you want the refworks
bibtex file, I can

dspace import -b -m refworks-map.map -e misi...@fit.edu -c 123456789/6856
-s refworkstest.txt -i bibtex
INFO [main] (DSpaceKernelInit.java:52) - Created new kernel:
DSpaceKernel:org.dspace:name=cf20d3c4-227c-4adb-82da-1def97a034c7,type=DSp
aceKernel:lastLoad=null:loadTime=0:running=false:kernel=null
INFO [main] (ConfigurationManager.java:1224) - Loading from classloader:
file:/srv/dspace/config/dspace.cfg
INFO [main] (ConfigurationManager.java:1224) - Using dspace provided log
configuration (log.init.config)
INFO [main] (ConfigurationManager.java:1224) - Loading:
/srv/dspace/config/log4j.properties
Destination collections:
Owning  Collection: Bibupload Holding
INFO: Dataloader 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader@6d1a0d35
will be used for the import!
Started: 1359477659086
Ended: 1359477660013
Elapsed time: 0 secs (927 msecs)
Exception: Lexical error at line 1, column 79.  Encountered: \u03b7
(951), after : 
org.jbibtex.TokenMgrError: Lexical error at line 1, column 79.
Encountered: \u03b7 (951), after : 
at 
org.jbibtex.LaTeXParserTokenManager.getNextToken(LaTeXParserTokenManager.j
ava:303)
at org.jbibtex.LaTeXParser.jj_scan_token(LaTeXParser.java:408)
at org.jbibtex.LaTeXParser.jj_3R_6(LaTeXParser.java:270)
at org.jbibtex.LaTeXParser.jj_3_3(LaTeXParser.java:253)
at org.jbibtex.LaTeXParser.jj_2_3(LaTeXParser.java:242)
at org.jbibtex.LaTeXParser.String(LaTeXParser.java:190)
at org.jbibtex.LaTeXParser.Object(LaTeXParser.java:66)
at org.jbibtex.LaTeXParser.ObjectList(LaTeXParser.java:46)
at org.jbibtex.LaTeXParser.LaTeX(LaTeXParser.java:21)
at org.jbibtex.LaTeXParser.parse(LaTeXParser.java:16)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.parseLaTeX
(BibTexDataLoader.java:169)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.loadData(B
ibTexDataLoader.java:132)
at 
gr.ekt.transformationengine.core.TransformationEngine.transform(Transforma
tionEngine.java:111)
at 
org.dspace.app.itemimport.ItemImport.addBTEItems(ItemImport.java:649)
at org.dspace.app.itemimport.ItemImport.main(ItemImport.java:575)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
57)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
pl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at 
org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183)
 
 
 
I was able to load the data via an EndNote export from RefWorks, however
all it did was create the ~400 records, with all Unknown data.
 
Thanks for any help,
 
Tom



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[Dspace-tech] SWORDv2 Client for DSpace?

2013-01-29 Thread Bram Luyten
As far as I can tell from the docs, DSpace 3 contains:
- SWORD v1 serverhttps://wiki.duraspace.org/display/DSDOC3x/SWORDv1+Serverto
accept v1 deposits
- SWORD v2 serverhttps://wiki.duraspace.org/display/DSDOC3x/SWORDv2+Serverto
accept v2 deposits
- SWORD v1 clienthttps://wiki.duraspace.org/display/DSDOC3x/SWORDv1+Clientto
send v1 deposits into another SWORD v1 system

Does anyone currently have or is anyone currently working on code to add a
SWORDv2 client to DSpace?

thanks,

Bram

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Re: [Dspace-tech] SWORDv2 Client for DSpace?

2013-01-29 Thread Benjamin Ryan
Bram,
   Richard Jones of CottageLabs has Java code for a SWORD2 Client 
at https://github.com/swordapp/JavaClient2.0
   He recently did some work on the SWORD2 server that we have used 
to replace the SWORD2 server in Dspace (there were some fixes and improvements 
made).
   I have not used the client but have tested the server using CURL 
and the fixes to the METS ingester work fine.

Regards,
   Ben

--
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Jorum Technical Manager

5.12 Roscoe Building
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Manchester
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Tel: 0160 275 6039
E-mail: 
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--

From: Bram Luyten [mailto:b...@mire.be]
Sent: 30 January 2013 04:31
To: DSpace Tech
Subject: [Dspace-tech] SWORDv2 Client for DSpace?

As far as I can tell from the docs, DSpace 3 contains:
- SWORD v1 serverhttps://wiki.duraspace.org/display/DSDOC3x/SWORDv1+Server to 
accept v1 deposits
- SWORD v2 serverhttps://wiki.duraspace.org/display/DSDOC3x/SWORDv2+Server to 
accept v2 deposits
- SWORD v1 clienthttps://wiki.duraspace.org/display/DSDOC3x/SWORDv1+Client to 
send v1 deposits into another SWORD v1 system

Does anyone currently have or is anyone currently working on code to add a 
SWORDv2 client to DSpace?

thanks,

Bram

--
[Image removed by sender. logo]

Bram Luyten @mire
2888 Loker Avenue East, Suite 315, Carlsbad, CA. 92010
Esperantolaan 4, Heverlee 3001, Belgium
 http://www.atmire.com/ 
www.atmire.comhttp://atmire.com/website/?q=servicesutm_source=emailfooterutm_medium=emailutm_campaign=braml


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Re: [Dspace-tech] Uploading Bibliographic information from RefWorks

2013-01-29 Thread Konstantinos Stamatis
Dear Thomas,
 
At the very beginning, we would like to thanks you for trying to use EKT's
contribution to DSpace in order to load records in your system.
 
As far as the bibtex exception concerns, it seems that the problem relies on
jbibtex library rather on the BTE implementation. My guess is that the
exported bibtex file includes invalid characters or something like that.
 
Regarding the issue that Endnote or RIS data are imported with no values in
the various fields, keep in mind that you have to specify your configuration
in the following file: dspace/config/spring/api/bte.xml
 
In this file, you have to specify in the output generator bean (bean
id=outputGenerator
class=gr.ekt.transformationengine.outputGenerators.DSpaceOutputGenerator)
the schemas that you have in your DSpace installation and then, in each of
these schemas you need to specify a list of pairs (name of the field of the
imported data + the name of the schema element) like the following XML
snippet :
 
key
  valueTitle/value
/key
ref bean=titleDSpaceMetadata /
 
In the case of RIS format, values must be terms like AU, TY, PY and so on.
The default value Title is not going to work in your case.
The reference bean (titleDSpaceMetadata) must declare the element and
qualifier of your DSpace schema like the following lines:
 
bean id=titleDSpaceMetadata
class=gr.ekt.transformationengine.dspace.DSpaceMetadata
  property name=schema value=dc /
  property name=element value=title /
/bean
 
Hope it helps.
 
Should you need any further help, we would be more than happy to help you.
 
 
Best regards,
 
Kostas Stamatis
National Documentation Center, Athens, Greece
 
 
 
 
 
 
On 1/29/13 10:55 AM, Thomas  Misilo misilot@... wrote:
 
Hi,
 
I was wondering if anyone has used the new bibliographic upload for
DSpace 3.0 yet with a refworks bibtex file?
 
Below is what I have tried, and the ouput I got. If you want the refworks
bibtex file, I can
 
dspace import -b -m refworks-map.map -e misilot@... -c 123456789/6856
-s refworkstest.txt -i bibtex
INFO [main] (DSpaceKernelInit.java:52) - Created new kernel:
DSpaceKernel:org.dspace:name=cf20d3c4-227c-4adb-82da-1def97a034c7,type=DSp
aceKernel:lastLoad=null:loadTime=0:running=false:kernel=null
INFO [main] (ConfigurationManager.java:1224) - Loading from classloader:
file:/srv/dspace/config/dspace.cfg
INFO [main] (ConfigurationManager.java:1224) - Using dspace provided log
configuration (log.init.config)
INFO [main] (ConfigurationManager.java:1224) - Loading:
/srv/dspace/config/log4j.properties
Destination collections:
Owning  Collection: Bibupload Holding
INFO: Dataloader 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader@...
will be used for the import!
Started: 1359477659086
Ended: 1359477660013
Elapsed time: 0 secs (927 msecs)
Exception: Lexical error at line 1, column 79.  Encountered: \u03b7
(951), after : 
org.jbibtex.TokenMgrError: Lexical error at line 1, column 79.
Encountered: \u03b7 (951), after : 
at 
org.jbibtex.LaTeXParserTokenManager.getNextToken(LaTeXParserTokenManager.j
ava:303)
at org.jbibtex.LaTeXParser.jj_scan_token(LaTeXParser.java:408)
at org.jbibtex.LaTeXParser.jj_3R_6(LaTeXParser.java:270)
at org.jbibtex.LaTeXParser.jj_3_3(LaTeXParser.java:253)
at org.jbibtex.LaTeXParser.jj_2_3(LaTeXParser.java:242)
at org.jbibtex.LaTeXParser.String(LaTeXParser.java:190)
at org.jbibtex.LaTeXParser.Object(LaTeXParser.java:66)
at org.jbibtex.LaTeXParser.ObjectList(LaTeXParser.java:46)
at org.jbibtex.LaTeXParser.LaTeX(LaTeXParser.java:21)
at org.jbibtex.LaTeXParser.parse(LaTeXParser.java:16)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.parseLaTeX
(BibTexDataLoader.java:169)
at 
gr.ekt.transformationengine.dataloaders.dspace.BibTexDataLoader.loadData(B
ibTexDataLoader.java:132)
at 
gr.ekt.transformationengine.core.TransformationEngine.transform(Transforma
tionEngine.java:111)
at 
org.dspace.app.itemimport.ItemImport.addBTEItems(ItemImport.java:649)
at org.dspace.app.itemimport.ItemImport.main(ItemImport.java:575)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
57)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
pl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at 
org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:183)
 
 
 
I was able to load the data via an EndNote export from RefWorks, however
all it did was create the ~400 records, with all Unknown data.
 
Thanks for any help,
 
Tom
 

 

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