Re: [Dspace-tech] Data on new DSpace Submission Interface(CINECA) does not pass to submission form

[Kostas Stamatis]

Dear Alexander,

 

Take a look here: 
https://github.com/DSpace/DSpace/blob/master/dspace/config/spring/api/bte.xml

You need to configure it respectively!

Look the documentation as well: 
https://wiki.duraspace.org/display/DSDOC4x/Submission+User+Interface#SubmissionUserInterface-ConfiguringStartSubmissionLookupStep

 

 

Regards,

 

Kostas

 

 

 

From: Alexander Wong [mailto:amd...@gmail.com] 
Sent: Wednesday, May 21, 2014 7:36 AM
To: dspace-tech@lists.sourceforge.net
Subject: [Dspace-tech] Data on new DSpace Submission Interface(CINECA) does not 
pass to submission form

 

Dear DSpace Communities,

 

I have been trying to use the new DSpace Submission interface developed by 
CINECA for JSPUI. Everything looked good.

However, I cannot get several fields like ISSN/ISBN, Document Type (dc.type) 
and Subjects (dc.subject) passed to the submission form.

 

Any clues?

 

Thanks &  Regards,

Alexander Wong

 

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[Dspace-tech] Data on new DSpace Submission Interface(CINECA) does not pass to submission form

[Alexander Wong]

Dear DSpace Communities,

I have been trying to use the new DSpace Submission interface developed by
CINECA for JSPUI. Everything looked good.
However, I cannot get several fields like ISSN/ISBN, Document Type
(dc.type) and Subjects (dc.subject) passed to the submission form.

Any clues?

Thanks &  Regards,
Alexander Wong
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[Dspace-tech] Add date field in workflow tasks tables

[Carlos Walter Blandon Alvarez]

Hi all.

We need to add in the workflow tasks tables (Tasks you own and Tasks in the 
pool) a column with the date submitted.

Someone know what is the file or configuration to do this change?


Regards,


[http://www.eafit.edu.co/firmadigital/logo-EAFIT-color-peq-01.jpg]

Walter Blandón

Profesional-Analista Gestión Tecnológica
Centro Cultural Biblioteca LEV
Teléfono (57 4) 261 9500, extensión 9365
cblan...@eafit.edu.co



Carrera 49  N 7 sur - 50, Medellín - Colombia
Línea de atención al usuario: (57 4) 4489500  
www.eafit.edu.co



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Re: [Dspace-tech] Drupal + Dspace

[Hernan Carvajal Briceño]

Thanks Helix.

Here are some technologies: http://www.arvo.es/dspace/tag/rest/

I would appreciate if somebody could share it's experience integrating
Drupal (or Joomla, or any other CMS) with Drupal.

Thanks in advance.

Hernán Carvajal

Saludos cordiales,

Hernán Carvajal
Director de Tecnologías, Prodigio Consultores
Oficina: 02-5549849 / Celular: 88370295
www.prodigioconsultores.com



2014-05-20 16:47 GMT-04:00 helix84 :

> Before you start thinking about which technology you'll use, you
> should first define your needs. What do you want to build? What use
> cases will your users have for the service? Why is not just DSpace or
> just Drupal not enough? Why are you considering this combination of
> software and not another, what does each of the systems bring to the
> table? It's impossible to give you useful advice without understanding
> your needs first.
>
>
> Regards,
> ~~helix84
>
> Compulsory reading: DSpace Mailing List Etiquette
> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette
>
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[Dspace-tech] sword throw exception with jdk1.7.0_45

[Zhang, Hui]

Hi,

We are using dspace3.0 with sword v1 and recently have a server migration with 
JVM upgraded from jdk1.7.0_21 to jdk1.7.0_45. The problem is that after the 
upgrade, the sword will throw exception unless we configure sword-server.cfg 
with specific port (e.g., server1.library.university.edu:8080/sword/deposit) 
instead of proxy (e.g., server1.library.university.edu/sword/deposit). We kind 
of nailed it down to SWORDUrlManager:

java.lang.StringIndexOutOfBounds
Exception: String index out of range: -6
java.lang.String.substring(String.java:1875)

org.dspace.sword.SWORDUrlManager.getDSpaceObject(SWORDUrlManager.java:172)

org.dspace.sword.DepositManager.getDepositTarget(DepositManager.java:63)
org.dspace.sword.DepositManager.deposit(DepositManager.java:100)

org.dspace.sword.DSpaceSWORDServer.doDeposit(DSpaceSWORDServer.java:120)

org.purl.sword.server.DepositServlet.doPost(DepositServlet.java:299)
javax.servlet.http.HttpServlet.service(HttpServlet.java:647)
javax.servlet.http.HttpServlet.service(HttpServlet.java:728)



public DSpaceObject getDSpaceObject(Context context, String
location)
throws DSpaceSWORDException, SWORDErrorException
{
try
{
String baseUrl = this.getBaseDepositUrl();
if (baseUrl.length() == location.length())
{
throw new
SWORDErrorException(DSpaceSWORDErrorCodes.BAD_URL, "The deposit URL is
incomplete");
}
String handle =
location.substring(baseUrl.length());
if (handle.startsWith("/"))
{
handle = handle.substring(1);
}

I want to know anyone has similar problem with sword getDspaceObject as well 
and suggestion on solution?

Thanks
—
Hui

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[Dspace-tech] Dspace 4.x - REST API - jsonp

[Sara Amato]

Is there any way to get a jsonp response back from the 4.1 REST API - 
https://wiki.duraspace.org/display/DSDOC4x/REST+API?  \

I've tried http://demo.dspace.org/rest/collections?callback=test with an Accept 
header of 'application/json' to no avail - though it does return nice json!


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Re: [Dspace-tech] Dspace 4.x - Web Front end to Importing/Exporting via Simple Archive Format?

[Sara Amato]

> select-a-collection, select-an-eperson, paste in web accessible url of 
> SimpleArchiveFormat ZIP'ed content,


I would whole heartedly support that option (and even use it ….)



On May 16, 2014, at 12:55 PM, Peter Dietz wrote:

> Hi Sara,
> 
> Thats a great question you've brought up, thanks. One of my goals for DSpace 
> would be for the admin to be able do as much self-service as possible, and 
> not need to ssh into servers, or contact IT to do the other half.
> 
> Terry's got some cool solutions that have been steadily improving, I'm 
> actually pretty impressed with how robust it is growing into. So, I'm 
> scratching my head, because I'm wondering if this remote deposit is something 
> that DSpace should be developed to support, or if middleware like Terry's 
> tools are the way to go. Both?
> 
> In my head I'm thinking DSpace could support select-a-collection, 
> select-an-eperson, paste in web accessible url of SimpleArchiveFormat ZIP'ed 
> content, and then let it run.
> 
> I think it might be worthwhile for people to take a look at the workflow 
> between content acquisition (receive boxes of physical content that needs 
> digitization) or (receive borne digital files), all the way to DSpace ingest 
> (whether that is batch, one-by-one UI, or SWORD). Ultimately people would 
> want efficient/accurate flows. i.e. What is your digitization flow, What is 
> your metadata tagging flow, QA flow, create SimpleArchiveFormat Package flow, 
> etc.
> 
> Peter Dietz
> 
> 
> On Fri, May 16, 2014 at 12:27 PM, Sara Amato  wrote:
> Thanks Terry - this looks promising!
> 
> On May 14, 2014, at 1:06 PM, Terry Brady wrote:
> 
>> Sara,
>> 
>> I have shared some code that might be useful for this task.
>> 
>> https://github.com/Georgetown-University-Libraries/batch-tools/wiki/Batch-tools-for-content-administration
>> 
>> We run this code in Apache alongside our DSpace instance.
>> 
>> The code requires a bit of customization to get it running.
>> 
>> https://github.com/Georgetown-University-Libraries/batch-tools/wiki/Batch-tools-customization-steps
>> 
>> Terry
>> 
>> 
>> On Wed, May 14, 2014 at 2:04 PM, Sara Amato  wrote:
>> I've been googling around looking to see if anyone has written a batch 
>> import front end for Dspace (we are running 4.1).The import via Simple 
>> Archive Format on the command line works wonderfully, but we're hoping that 
>> there is some sort of web front end out there to make it easier for staff 
>> who are uncomfortable at the command line. 
>> 
>> 
>> And advice appreciated! 
>> 
>> 
>> -
>> Sara Amato
>> Digital Asset Management Librarian
>> Hatfield Library, Willamette University
>> Salem, OR, 97301
>> sam...@willamette.edu
>> (503) 370 - 6719
>> 
>> 
>> 
>> 
>> 
>> 
>> --
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>> 
>> 
>> 
>> -- 
>> Terry Brady
>> Applications Programmer Analyst
>> Georgetown University Library Information Technology
>> https://www.library.georgetown.edu/lit/code
>> 202-687-7053
> 
> 
> --
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Re: [Dspace-tech] Problems with AIP restore

[Tim Donohue]

Hi Michael,

The commands look correct overall. Just wanted to double check that you 
were running the correct commands. Unfortunately, I'm not entirely sure 
why the restoration command is failing (and I haven't had time today to 
do any deeper digging)

There's a few options here for next steps:

1) If you actually wanted to do an upgrade, it still is possible, even 
if you are also migrating servers at the same time. (See below)

2) If you truly want to do AIP migration, then we might need to dig into 
your AIPs more to understand what is going on. I'm not exactly sure what 
the issue is offhand.

However, since you stated that your purpose is to just upgrade to DSpace 
4 while changing servers, that seems *easier* to do by following the 
normal upgrade process... Here's essentially what you'd do (please test 
this process first *BEFORE* doing anything in Production):

1) Make a backup copy of your OLD, DSpace 1.8 PostgreSQL Database, for 
example:

pg_dump -U [database-user] -f my-dspace-db-backup.sql [database-name]

(Creates a file named "my-dspace-db-backup.sql" which has the full 
contents of your database)

2) Create an exact replica of the DSpace 1.8 Database in a new database 
called "dspace-upgrade". Pass it the backup.sql file to recreate the 
entire database.

createdb -U [database-user] -E UNICODE dspace-upgrade
psql -U [database-user] -f my-dspace-db-backup.sql dspace-upgrade

   You now should have an exact replica, DSpace 1.8 database in 
"dspace-upgrade"

3) Upgrade that replica, DSpace 1.8 database to be compatible with 
DSpace 4.x. You'll have to first upgrade the database to 3.x 
compatibility, then to 4.x

# Upgrade to 3.x compatibility by running 'database_schema_18-3.sql'
psql -U [database-user] -f 
[dspace-source]/dspace/etc/postgres/database_schema_18-3.sql dspace-upgrade

# Then upgrade to 4.x compatiblity by running 'database_schema_3-4.sql'
psql -U [database-user] -f 
[dspace-source]/dspace/etc/postgres/database_schema_3-4.sql dspace-upgrade

4) Now, you have a DSpace 4.x compatible database. You can move that 
over to your other server which is running DSpace 4.

# Dump the DSpace 4.x compatible database data (from dspace-upgrade)
pg_dump -U [database-user] -f my-dspace-4.x-db.sql dspace-upgrade

# Copy that "my-dspace-4.x-db.sql" to your NEW server (via scp or 
sftp or similar)

# Delete the default (should be empty) 4.x Database on the NEW server.
dropdb -U [database-user] [database-name]

# Recreate an empty DB and load the 4.x compatible data
createdb -U [database-user] -E UNICODE [database-name]
psql -U [database-user] -f my-dspace-4.x-db.sql [database-name]

5) FINALLY, Just copy your "assetstore" folder from your OLD server to 
the NEW server and do a full re-index of everything.

At this point, you should have all your old data moved over into an 
*uncustomized* version of DSpace 4 on a new server.

As the final step, you'd just reconfigure things how you like them, or 
recustomize the UI, etc.

- Tim


On 5/20/2014 11:29 AM, Michael O Holt wrote:
> Hi Tim,
>
> Here are the commands I'm running:
>
> To export AIPs: ./dspace packager -d -a -t AIP -e vtext-h...@valdosta.edu -i 
> 10428/0 sitewide-aip.zip
>
> To import AIPs: ./dspace packager -r -a -f -t AIP -e vtext-h...@valdosta.edu 
> -i 10428/0 /home//sitewide-aip.zip
>
> The user that owns the /home/user/ folder owns the dspace folder as well, so 
> it shouldn't be a permissions issue.
>
> I made sure to export all the aip files the export created. I wen back and 
> checked to make sure that the collection number throwing the error had an AIP 
> present and it did.
>
> I would love to just update to 4.1 as that would be far easier, but I'm 
> afraid I let the version of Ubuntu Server our Dspace runs on reach EOL. Now I 
> can't install the important security updates the OS needs, so I have to 
> migrate everything to a new server I'm afraid.
>
> -Michael
>
> 
> From: Tim Donohue 
> Sent: Tuesday, May 20, 2014 12:21 PM
> To: Michael O Holt; dspace-tech@lists.sourceforge.net
> Subject: Re: [Dspace-tech] Problems with AIP restore
>
> Hi Michael,
>
> A few questions in order to clarify how you are encountering this error
> message.
>
> * Could you send us the exact command(s) you are running, both to export
> the AIPs from DSpace 1.8 and then to reimport them into DSpace 4.x? It
> might help us better understand why this error is occurring.
>
> * Did you only export the SiteWide AIP? Or did you make sure to export
> all the AIPs? Just to clarify: There should be one AIP for every single
> Community, Collection and Item in your 1.8 DSpace. In order to restore
> all your content, you'd need to migrate all of your AIPs from your old
> 1.8 server to your 4.1 server.
>
> As a sidenote: If you are simply trying to upgrade from 1.8 to 4.x, you
> do not have to use the AIP backup & restore to do so. It's also
> perfectly reasonab

Re: [Dspace-tech] Drupal + Dspace

[helix84]

Before you start thinking about which technology you'll use, you
should first define your needs. What do you want to build? What use
cases will your users have for the service? Why is not just DSpace or
just Drupal not enough? Why are you considering this combination of
software and not another, what does each of the systems bring to the
table? It's impossible to give you useful advice without understanding
your needs first.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

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Re: [Dspace-tech] Add Browse fields to specific collection only

[Maura Carbone]

Hi Elvi,
We accomplished this by making sub-themes for the collections we wanted to
have special browse fields for. I've attached sample files (the xsl and
sitemap)--you'd place them in a folder named whatever you named your
subtheme, in the main theme's folder (theme folder->subtheme folder
->files). I had to re-copy some of the main theme's files to get them to
display properly, so if you you decide to try this and have issues I might
have encountered the same ones. You then need to refer that collection
handle to the new theme in your xmlui.xconf. There may be an easier/better
way to do this, but it worked for us.

Hope that helps!

-- 
Maura Carbone
Digital Initiatives Librarian
Brandeis University
Library and Technology Services
Waltham, MA 02454-9110

email: mau...@brandeis.edu






http://apache.org/cocoon/i18n/2.1";
   xmlns:dri="http://di.tamu.edu/DRI/1.0/"; xmlns:mets="http://www.loc.gov/METS/";
   xmlns:xlink="http://www.w3.org/TR/xlink/"; xmlns:xsl="http://www.w3.org/1999/XSL/Transform";
   version="1.0" xmlns:dim="http://www.dspace.org/xmlns/dspace/dim";
   xmlns:xhtml="http://www.w3.org/1999/xhtml"; xmlns:mods="http://www.loc.gov/mods/v3";
   xmlns:dc="http://purl.org/dc/elements/1.1/"; xmlns="http://www.w3.org/1999/xhtml";
   exclude-result-prefixes="i18n dri mets xlink xsl dim xhtml mods dc">


   
   

  
   
   
   
   
   
  
  http://di.tamu.edu/DRI/1.0/"; id="aspect_artifactbrowser_CollectionViewer_list_collection-browse" class="ds-simple-list collection-browse">
 
Titles
 
 
Medium
 
 
Type
 
  
   



sitemap_example.xmap
Description: Binary data
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[Dspace-tech] Drupal + Dspace

[Hernan Carvajal Briceño]

Hi.

We want to integrate Dspace and Drupal, using Drupal as frontend, and
Dspace XMLUI as backend.

I wonder if somebody have already experienced with this combination of
softwares.

My questions are:
what is the best way of integrating this two systems? The method.
which technology?: OAI, Rest, Sword, LNI, SOLR

Thanks in advance.

Saludos cordiales,

Hernán Carvajal
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[Dspace-tech] RES: Item level stats software for DSPace

[Michelangelo M M Viana]

Hi Lewatle,

Here at PUCRS we are using AWSTATS (jspui):
http://repositorio.pucrs.br/awstats/awstats.pl?config=repositorio.pucrs.br 
You can see item level access at "Downloads" section.

Regards,

Michelangelo

Michelangelo Mazzardo Marques Viana | Support and Development
 Coordinator of Libraries Systems. Librarian CRB-10/1306
Pontifical Catholic University of Rio Grande do Sul - PUCRS
Ir.  Jose Otao Central Library | Porto Alegre, RS, Brazil
+55(51) 3353.4371| mvi...@pucrs.br | http://www.pucrs.br/biblioteca

Find us on Facebook: http://www.facebook.com/bibliotecapucrs 
Follow us on Twitter: https://twitter.com/bibliotecapucrs 
Know our spaces on Flickr: http://www.flickr.com/bibliotecapucrs 



-Mensagem original-
De: Alan Orth [mailto:alan.o...@gmail.com] 
Enviada em: terça-feira, 20 de maio de 2014 10:58
Para: dspace-tech@lists.sourceforge.net
Assunto: Re: [Dspace-tech] Item level stats software for DSPace

Hey,

Well DSpace (since 1.8?) does item-level stats... as long as you're using the 
XMLUI.  Or did you want more-detailed stats, like reports?

We're using a module from @tmire called Content and Usage Analysis, which gives 
download stats and extra for bitstreams, communities, etc.

https://atmire.com/website/?q=modules/cua

Alan

On 05/09/2014 02:26 PM, Lewatle Phaladi wrote:
> Dear All,
> 
>  
> 
> Is there anyone of us who knows of item level stats software that I 
> can also use to generate statistics on item level from DSpace.
> 
>  
> 
> /Regards,/
> 
> /Lewatle /
> 
>  
> 
> / /
> 
>  
> 
> This communication is intended for the addressee only. It is 
> confidential. If you have received this communication in error, please 
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> that the content of this message may not be legally binding on the 
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> author, which are not necessarily the views and opinions of The 
> University of the Witwatersrand, Johannesburg. All agreements between 
> the University and outsiders are subject to South African Law unless 
> the University agrees in writing to the contrary.
> 
> 
> 
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> 

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Re: [Dspace-tech] Google Scholar - not indexed correctly

[Tim Donohue]

Hi Stuart,

If you haven't already seen it, Google Scholar also has their own 
"Troubleshooting" tips:

http://scholar.google.com/intl/en/scholar/inclusion.html#troubleshooting

Under tip #7 there's a "Contact Us" form where they ask you to send in 
specific URLs which Google Scholar is not indexing properly. So, if you 
have not already submitted that form, it might be a place to start.

As Sarah mentioned, Google Scholar staff are very willing to talk with 
institutions directly (though I'm not sure how quickly they are able to 
respond to all requests). By talking with individual institutions, 
Google Scholar staff are sometimes able to discover common issues with 
indexing content in DSpace. They then forward any common issues back to 
the DSpace Developers & we work to get them fixed/cleaned up in the next 
release. (That's the primary reason why staying up-to-date with DSpace 
can be a big benefit for Google Scholar inclusion.)

- Tim

On 5/20/2014 11:14 AM, stuart.wood wrote:
> I filled in the request form via Google Scholar some time ago, but didn't get
> anything back - is there any other way to contact?
>
> Thanks
>
>
>
> --
> View this message in context: 
> http://dspace.2283337.n4.nabble.com/Google-Scholar-not-indexed-correctly-tp4673153p4673157.html
> Sent from the DSpace - Tech mailing list archive at Nabble.com.
>
> --
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Re: [Dspace-tech] Problems with AIP restore

[Michael O Holt]

Hi Tim,

Here are the commands I'm running:

To export AIPs: ./dspace packager -d -a -t AIP -e vtext-h...@valdosta.edu -i 
10428/0 sitewide-aip.zip

To import AIPs: ./dspace packager -r -a -f -t AIP -e vtext-h...@valdosta.edu -i 
10428/0 /home//sitewide-aip.zip   

The user that owns the /home/user/ folder owns the dspace folder as well, so it 
shouldn't be a permissions issue. 

I made sure to export all the aip files the export created. I wen back and 
checked to make sure that the collection number throwing the error had an AIP 
present and it did.

I would love to just update to 4.1 as that would be far easier, but I'm afraid 
I let the version of Ubuntu Server our Dspace runs on reach EOL. Now I can't 
install the important security updates the OS needs, so I have to migrate 
everything to a new server I'm afraid.

-Michael


From: Tim Donohue 
Sent: Tuesday, May 20, 2014 12:21 PM
To: Michael O Holt; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] Problems with AIP restore

Hi Michael,

A few questions in order to clarify how you are encountering this error
message.

* Could you send us the exact command(s) you are running, both to export
the AIPs from DSpace 1.8 and then to reimport them into DSpace 4.x? It
might help us better understand why this error is occurring.

* Did you only export the SiteWide AIP? Or did you make sure to export
all the AIPs? Just to clarify: There should be one AIP for every single
Community, Collection and Item in your 1.8 DSpace. In order to restore
all your content, you'd need to migrate all of your AIPs from your old
1.8 server to your 4.1 server.

As a sidenote: If you are simply trying to upgrade from 1.8 to 4.x, you
do not have to use the AIP backup & restore to do so. It's also
perfectly reasonable to just follow the default upgrade process for
DSpace. (Essentially you'd just upgrade your old database from 1.8 to
3.x and then from 3.x to 4.x, and then move over the /assetstore folder
from one server to the other.)

https://wiki.duraspace.org/display/DSDOC4x/Upgrading+DSpace

- Tim

On 5/20/2014 9:41 AM, Michael O Holt wrote:
> Hi,
>
> I’m trying to migrate content from a 1.8 server to a new server running
> 4.1 (the server is running RHEL 6). I’ve created a sitewide AIP of the
> 1.8 site and I’m trying to import it to the new fresh install of 4.1.
> Yet, when I run the packager script on the new server, it always gives
> an error. Nothing shows up on the site afterwards either, so I know the
> import must not have completed. However, the /assetstore directory does
> seem to be populated. Yet, no communities, collections, or items are
> showing up on the site. I’ve tried running index-discovery and
> stat-initial with no effect. The error I get in the shell is as follows:
>
> org.dspace.content.crosswalk.CrosswalkInternalException:
> org.dspace.content.packager.PackageException: Unable to translate Handle
> to Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as
> DSpace Object (Handle='hdl:10428/1077') does not exist.
>
>  at
> org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:341)
>
>  at
> org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:259)
>
>  at
> org.dspace.content.packager.METSManifest.crosswalkXmd(METSManifest.java:1193)
>
>  at
> org.dspace.content.packager.METSManifest.crosswalkObjectOtherAdminMD(METSManifest.java:1106)
>
>  at
> org.dspace.content.packager.AbstractMETSIngester.ingestObject(AbstractMETSIngester.java:459)
>
>  at
> org.dspace.content.packager.AbstractMETSIngester.replace(AbstractMETSIngester.java:1170)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:241)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at org.dspace.app.packager.Packager.replace(Packager.java:727)
>
>  at org.dspace.app.packager.Packager.main(Packager.java:373)
>
>  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>
>  at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>
>  at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
>  at java.lang.reflect.Method.invoke(Method.java:606)
>
>  at
> org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)
>
>  at
> org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)
>
> Caused by: org.dspace.content.packager.PackageException: Unable to
> translate Handle to Internal ID in group named
> 'COLLECTION_hdl:10428/1077_ADMIN' as DSpace Object
> (Handl

Re: [Dspace-tech] Problems with AIP restore

[Tim Donohue]

Hi Michael,

A few questions in order to clarify how you are encountering this error 
message.

* Could you send us the exact command(s) you are running, both to export 
the AIPs from DSpace 1.8 and then to reimport them into DSpace 4.x? It 
might help us better understand why this error is occurring.

* Did you only export the SiteWide AIP? Or did you make sure to export 
all the AIPs? Just to clarify: There should be one AIP for every single 
Community, Collection and Item in your 1.8 DSpace. In order to restore 
all your content, you'd need to migrate all of your AIPs from your old 
1.8 server to your 4.1 server.

As a sidenote: If you are simply trying to upgrade from 1.8 to 4.x, you 
do not have to use the AIP backup & restore to do so. It's also 
perfectly reasonable to just follow the default upgrade process for 
DSpace. (Essentially you'd just upgrade your old database from 1.8 to 
3.x and then from 3.x to 4.x, and then move over the /assetstore folder 
from one server to the other.)

https://wiki.duraspace.org/display/DSDOC4x/Upgrading+DSpace

- Tim

On 5/20/2014 9:41 AM, Michael O Holt wrote:
> Hi,
>
> I’m trying to migrate content from a 1.8 server to a new server running
> 4.1 (the server is running RHEL 6). I’ve created a sitewide AIP of the
> 1.8 site and I’m trying to import it to the new fresh install of 4.1.
> Yet, when I run the packager script on the new server, it always gives
> an error. Nothing shows up on the site afterwards either, so I know the
> import must not have completed. However, the /assetstore directory does
> seem to be populated. Yet, no communities, collections, or items are
> showing up on the site. I’ve tried running index-discovery and
> stat-initial with no effect. The error I get in the shell is as follows:
>
> org.dspace.content.crosswalk.CrosswalkInternalException:
> org.dspace.content.packager.PackageException: Unable to translate Handle
> to Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as
> DSpace Object (Handle='hdl:10428/1077') does not exist.
>
>  at
> org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:341)
>
>  at
> org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:259)
>
>  at
> org.dspace.content.packager.METSManifest.crosswalkXmd(METSManifest.java:1193)
>
>  at
> org.dspace.content.packager.METSManifest.crosswalkObjectOtherAdminMD(METSManifest.java:1106)
>
>  at
> org.dspace.content.packager.AbstractMETSIngester.ingestObject(AbstractMETSIngester.java:459)
>
>  at
> org.dspace.content.packager.AbstractMETSIngester.replace(AbstractMETSIngester.java:1170)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:241)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at
> org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
>
>  at org.dspace.app.packager.Packager.replace(Packager.java:727)
>
>  at org.dspace.app.packager.Packager.main(Packager.java:373)
>
>  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>
>  at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>
>  at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
>  at java.lang.reflect.Method.invoke(Method.java:606)
>
>  at
> org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)
>
>  at
> org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)
>
> Caused by: org.dspace.content.packager.PackageException: Unable to
> translate Handle to Internal ID in group named
> 'COLLECTION_hdl:10428/1077_ADMIN' as DSpace Object
> (Handle='hdl:10428/1077') does not exist.
>
>  at
> org.dspace.content.packager.PackageUtils.translateGroupNameForImport(PackageUtils.java:932)
>
>  at
> org.dspace.content.packager.RoleIngester.ingestDocument(RoleIngester.java:383)
>
>  at
> org.dspace.content.packager.RoleIngester.ingest(RoleIngester.java:471)
>
>  at
> org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:337)
>
>  ... 17 more
>
> org.dspace.content.crosswalk.CrosswalkInternalException:
> org.dspace.content.packager.PackageException: Unable to translate Handle
> to Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as
> DSpace Object (Handle='hdl:10428/1077') does not exist.
>
> Any help with this would be greatly appreciated.  I’m at a loss for what
> to do next.
>
> Michael Holt
>
> Assistant Professor and Reference Librarian/Marketing Coordinator
>
> Valdosta State University Odum Library
>
> 1500 North Patterson Street, Valdosta, GA 31698
>
> 229.333.7105
>
>
>
> -

Re: [Dspace-tech] Google Scholar - not indexed correctly

[stuart.wood]

I filled in the request form via Google Scholar some time ago, but didn't get
anything back - is there any other way to contact?

Thanks



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Re: [Dspace-tech] Google Scholar - not indexed correctly

[Shreeves, Sarah L]

I've found contacting Google Scholar directly often helps - they worked closely 
with us when we were having issues.

Sarah

Sarah L. Shreeves
IDEALS Coordinator - http://ideals.illinois.edu/
Scholarly Commons Co-Coordinator - http://library.illinois.edu/sc/
Associate Professor, University Library
University of Illinois at Urbana-Champaign
sshre...@illinois.edu
217-244-3877

-Original Message-
From: stuart.wood [mailto:sw...@le.ac.uk] 
Sent: Tuesday, May 20, 2014 11:08 AM
To: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] Google Scholar - not indexed correctly

Thanks for the response Tim - We are running 1.8.3 but hope to be upgrading to 
4.1 sometime this year. I've read the SEO guide and it appears to me that we 
are doing the right things (we have disabled the browse to robots, but are 
using sitemaps, have google crosswalks in place and the metadata appears 
correctly). Our link in Google are fine, its just scholar that doesn't pick 
them up.



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Re: [Dspace-tech] Google Scholar - not indexed correctly

[stuart.wood]

Thanks for the response Tim - We are running 1.8.3 but hope to be upgrading
to 4.1 sometime this year. I've read the SEO guide and it appears to me that
we are doing the right things (we have disabled the browse to robots, but
are using sitemaps, have google crosswalks in place and the metadata appears
correctly). Our link in Google are fine, its just scholar that doesn't pick
them up.



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Re: [Dspace-tech] Google Scholar - not indexed correctly

[Tim Donohue]

Hi Stuart,

If you haven't seen it already, we have detailed information on 
improving Search Engine Optimization (including for Google Scholar) in 
the documentation at:

https://wiki.duraspace.org/display/DSDOC4x/Search+Engine+Optimization

In addition, what version of DSpace are you running? We make SEO 
enhancements in nearly every major version of DSpace (as the way in 
which Google/Google Scholar index content changes over time).

The DSpace 4.x release actually included enhancements for Google Scholar 
indexing (which we implemented after working directly with the Google 
Scholar team on how to make DSpace easier to index).

https://wiki.duraspace.org/display/DSDOC4x/Release+Notes

- Tim

On 5/20/2014 10:28 AM, stuart.wood wrote:
> Hi all,
>
> We have a repository of 20,000+ items and it seems that we are not being
> indexed by Google scholar. I've looked through the forums and guides to
> ensure we are doing everything correctly in the config, but still we don't
> get indexed.  We have a redirect in place if a bitstream is requested so
> that the user is redirected to the  item page and i was wondering if this
> could be the reason why we aren't being indexed properly.
>
> Thanks for any help,
>
> Stuart
>
>
>
> --
> View this message in context: 
> http://dspace.2283337.n4.nabble.com/Google-Scholar-not-indexed-correctly-tp4673153.html
> Sent from the DSpace - Tech mailing list archive at Nabble.com.
>
> --
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> Instantly run your Selenium tests across 300+ browser/OS combos.
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[Dspace-tech] Google Scholar - not indexed correctly

[stuart.wood]

Hi all,

We have a repository of 20,000+ items and it seems that we are not being
indexed by Google scholar. I've looked through the forums and guides to
ensure we are doing everything correctly in the config, but still we don't
get indexed.  We have a redirect in place if a bitstream is requested so
that the user is redirected to the  item page and i was wondering if this
could be the reason why we aren't being indexed properly.

Thanks for any help,

Stuart



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[Dspace-tech] Problems with AIP restore

[Michael O Holt]

Hi,

I'm trying to migrate content from a 1.8 server to a new server running 4.1 
(the server is running RHEL 6). I've created a sitewide AIP of the 1.8 site and 
I'm trying to import it to the new fresh install of 4.1. Yet, when I run the 
packager script on the new server, it always gives an error. Nothing shows up 
on the site afterwards either, so I know the import must not have completed. 
However, the /assetstore directory does seem to be populated. Yet, no 
communities, collections, or items are showing up on the site. I've tried 
running index-discovery and stat-initial with no effect. The error I get in the 
shell is as follows:

org.dspace.content.crosswalk.CrosswalkInternalException: 
org.dspace.content.packager.PackageException: Unable to translate Handle to 
Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as DSpace Object 
(Handle='hdl:10428/1077') does not exist.
at 
org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:341)
at 
org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:259)
at 
org.dspace.content.packager.METSManifest.crosswalkXmd(METSManifest.java:1193)
at 
org.dspace.content.packager.METSManifest.crosswalkObjectOtherAdminMD(METSManifest.java:1106)
at 
org.dspace.content.packager.AbstractMETSIngester.ingestObject(AbstractMETSIngester.java:459)
at 
org.dspace.content.packager.AbstractMETSIngester.replace(AbstractMETSIngester.java:1170)
at 
org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:241)
at 
org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
at 
org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
at 
org.dspace.content.packager.AbstractPackageIngester.replaceAll(AbstractPackageIngester.java:271)
at org.dspace.app.packager.Packager.replace(Packager.java:727)
at org.dspace.app.packager.Packager.main(Packager.java:373)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at 
org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)
Caused by: org.dspace.content.packager.PackageException: Unable to translate 
Handle to Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as 
DSpace Object (Handle='hdl:10428/1077') does not exist.
at 
org.dspace.content.packager.PackageUtils.translateGroupNameForImport(PackageUtils.java:932)
at 
org.dspace.content.packager.RoleIngester.ingestDocument(RoleIngester.java:383)
at 
org.dspace.content.packager.RoleIngester.ingest(RoleIngester.java:471)
at 
org.dspace.content.crosswalk.RoleCrosswalk.ingest(RoleCrosswalk.java:337)
... 17 more
org.dspace.content.crosswalk.CrosswalkInternalException: 
org.dspace.content.packager.PackageException: Unable to translate Handle to 
Internal ID in group named 'COLLECTION_hdl:10428/1077_ADMIN' as DSpace Object 
(Handle='hdl:10428/1077') does not exist.


Any help with this would be greatly appreciated.  I'm at a loss for what to do 
next.


Michael Holt
Assistant Professor and Reference Librarian/Marketing Coordinator
Valdosta State University Odum Library
1500 North Patterson Street, Valdosta, GA 31698
229.333.7105

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Re: [Dspace-tech] Item level stats software for DSPace

[Alan Orth]

Hey,

Well DSpace (since 1.8?) does item-level stats... as long as you're
using the XMLUI.  Or did you want more-detailed stats, like reports?

We're using a module from @tmire called Content and Usage Analysis,
which gives download stats and extra for bitstreams, communities, etc.

https://atmire.com/website/?q=modules/cua

Alan

On 05/09/2014 02:26 PM, Lewatle Phaladi wrote:
> Dear All,
> 
>  
> 
> Is there anyone of us who knows of item level stats software that I can
> also use to generate statistics on item level from DSpace.
> 
>  
> 
> /Regards,/
> 
> /Lewatle /
> 
>  
> 
> / /
> 
>  
> 
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Re: [Dspace-tech] JAVA_OPTS for cron jobs?

[Alan Orth]

That's good advice, Mark.

You're right on about the OOM killer bit.  I actually had just realized
that Tomcat will always be killed by OOM if OOM is invoked, because
Tomcat of course is carving a substantial heap of memory for itself. :)

I just had a look at my DSpace Control panel and found that the memory
usage is less than half of what I've allocated Tomcat, and because I've
pinned -Xms and -Xmx, Java is using it all anyways.  I know the DSpace
guide recommends this, but I'm not sure how I feel about it.  In any
case, I've reduced my -Xmx for Tomcat now, and they are currently:

JAVA_OPTS="-Djava.awt.headless=true -Xms1024m -Xms2048m
-XX:MaxPermSize=320m -XX:+UseConcMarkSweepGC -XX:+CMSIncrementalMode"

I didn't realize bin/dspace was setting a heap size, that's interesting.
 I wonder which memory settings my apps were using then that caused them
to run away with memory and incur the wrath of the OOM killer (upon
Tomcat's java!).  I will now explicitly set them in /etc/environment I
think, as well as start logging the output of each cron job so I can see
what's going wrong.  I'm not keen to start messing with memory options
in individual scripts; it seems like a maintenance nightmare, haha (sure
to forget what I set where, with different test servers laying around etc).

Cheers,

Alan

On 05/20/2014 04:10 PM, Mark H. Wood wrote:
> On Tue, May 20, 2014 at 11:33:48AM +0300, Alan Orth wrote:
>> I'm curious if anyone sets memory limits for DSpace's various cron jobs?
> 
> As delivered, DSpace does that itself.  In bin/dspace, around line 69,
> the script sets a maximum heap size of 256 MB, *unless* you already
> have JAVA_OPTS set.  One thing you might check is whether there is
> already a JAVA_OPTS value which sets substantially higher limits for
> any of Java's memory pools.
> 
>> Lately we've been having Tomcat's java process get killed every morning
>> around the same time, and all dmesg shows is that "java" was killed by
>> the kernel's OOM killer.  Catalina logs don't show any "SEVERE" errors,
>> so I have to assume it's the cron jobs which are using up loads of
>> memory and then confusing the kernel, which then identifies Tomcat's
>> java as the memory hog and kills it.
> 
> The kernel's notion of the best candidate for the OOM Killer probably
> has less to do with fixing blame than with recovering a big hunk of
> memory, making Tomcat a tempting target no matter which process you
> think is at fault.
> 
>> So I'm just curious if anyone has had these kinds of problems, and
>> if/what they set their JAVA_OPTS to in crontab.
> 
> If you set JAVA_OPTS globally in crontab, I would suggest moving that
> to individual commands (or scripts that they run) as needed, and
> tuning each one to its actual needs.  I haven't tried to profile
> memory usage on commandline Java app.s yet, so I have no specific
> advice here.
> 
> What limits have you set for Tomcat?  It's easy to find poor advice on
> this -- I've passed along some myself -- and give Tomcat far *more*
> than it needs.  I hope you're keeping an eye on Tomcat's actual memory
> usage and tuning it appropriately.  (I have a weekly reminder to snoop
> on this with my favorite tool:  Psi Probe.)
> 
>> The long term plan of course is to move to a machine with more memory
>> (currently 4GB).
> 
> 4GB should be plenty, unless you have many instances running
> concurrently or a truly enormous collection.  Other applications, the
> DBMS, etc. will have some impact on that, of course.
> 
> 
> 
> --
> "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE
> Instantly run your Selenium tests across 300+ browser/OS combos.
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> 
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> 

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telephone; my wish has come true because I can no longer figure out how
to use my telephone." -Bjarne Stroustrup, inventor of C++
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D

Re: [Dspace-tech] JAVA_OPTS for cron jobs?

[Mark H. Wood]

On Tue, May 20, 2014 at 11:33:48AM +0300, Alan Orth wrote:
> I'm curious if anyone sets memory limits for DSpace's various cron jobs?

As delivered, DSpace does that itself.  In bin/dspace, around line 69,
the script sets a maximum heap size of 256 MB, *unless* you already
have JAVA_OPTS set.  One thing you might check is whether there is
already a JAVA_OPTS value which sets substantially higher limits for
any of Java's memory pools.

> Lately we've been having Tomcat's java process get killed every morning
> around the same time, and all dmesg shows is that "java" was killed by
> the kernel's OOM killer.  Catalina logs don't show any "SEVERE" errors,
> so I have to assume it's the cron jobs which are using up loads of
> memory and then confusing the kernel, which then identifies Tomcat's
> java as the memory hog and kills it.

The kernel's notion of the best candidate for the OOM Killer probably
has less to do with fixing blame than with recovering a big hunk of
memory, making Tomcat a tempting target no matter which process you
think is at fault.

> So I'm just curious if anyone has had these kinds of problems, and
> if/what they set their JAVA_OPTS to in crontab.

If you set JAVA_OPTS globally in crontab, I would suggest moving that
to individual commands (or scripts that they run) as needed, and
tuning each one to its actual needs.  I haven't tried to profile
memory usage on commandline Java app.s yet, so I have no specific
advice here.

What limits have you set for Tomcat?  It's easy to find poor advice on
this -- I've passed along some myself -- and give Tomcat far *more*
than it needs.  I hope you're keeping an eye on Tomcat's actual memory
usage and tuning it appropriately.  (I have a weekly reminder to snoop
on this with my favorite tool:  Psi Probe.)

> The long term plan of course is to move to a machine with more memory
> (currently 4GB).

4GB should be plenty, unless you have many instances running
concurrently or a truly enormous collection.  Other applications, the
DBMS, etc. will have some impact on that, of course.

-- 
Mark H. Wood, Lead System Programmer   mw...@iupui.edu
Machines should not be friendly.  Machines should be obedient.


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Re: [Dspace-tech] JAVA_OPTS for cron jobs?

[Hilton Gibson]

Hi Alan

See:
http://wiki.lib.sun.ac.za/index.php/SUNScholar/Prepare_Ubuntu/S08#Step_8.2_Java_environment_settings_for_other_java_web_applications

Cheers

hg


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On 20 May 2014 10:33, Alan Orth  wrote:

> Hi,
>
> I'm curious if anyone sets memory limits for DSpace's various cron jobs?
>
> Lately we've been having Tomcat's java process get killed every morning
> around the same time, and all dmesg shows is that "java" was killed by
> the kernel's OOM killer.  Catalina logs don't show any "SEVERE" errors,
> so I have to assume it's the cron jobs which are using up loads of
> memory and then confusing the kernel, which then identifies Tomcat's
> java as the memory hog and kills it.
>
> So I'm just curious if anyone has had these kinds of problems, and
> if/what they set their JAVA_OPTS to in crontab.
>
> The long term plan of course is to move to a machine with more memory
> (currently 4GB).
>
> Thanks,
>
> DSpace version is 3.1, OS is Ubuntu 12.04.
>
> --
> Alan Orth
> alan.o...@gmail.com
> http://alaninkenya.org
> http://mjanja.co.ke
> "I have always wished for my computer to be as easy to use as my
> telephone; my wish has come true because I can no longer figure out how
> to use my telephone." -Bjarne Stroustrup, inventor of C++
> GPG public key ID: 0x8cb0d0acb5cd81ec209c6cdfbd1a0e09c2f836c0
>
>
>
> --
> "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE
> Instantly run your Selenium tests across 300+ browser/OS combos.
> Get unparalleled scalability from the best Selenium testing platform
> available
> Simple to use. Nothing to install. Get started now for free."
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[Dspace-tech] JAVA_OPTS for cron jobs?

[Alan Orth]

Hi,

I'm curious if anyone sets memory limits for DSpace's various cron jobs?

Lately we've been having Tomcat's java process get killed every morning
around the same time, and all dmesg shows is that "java" was killed by
the kernel's OOM killer.  Catalina logs don't show any "SEVERE" errors,
so I have to assume it's the cron jobs which are using up loads of
memory and then confusing the kernel, which then identifies Tomcat's
java as the memory hog and kills it.

So I'm just curious if anyone has had these kinds of problems, and
if/what they set their JAVA_OPTS to in crontab.

The long term plan of course is to move to a machine with more memory
(currently 4GB).

Thanks,

DSpace version is 3.1, OS is Ubuntu 12.04.

-- 
Alan Orth
alan.o...@gmail.com
http://alaninkenya.org
http://mjanja.co.ke
"I have always wished for my computer to be as easy to use as my
telephone; my wish has come true because I can no longer figure out how
to use my telephone." -Bjarne Stroustrup, inventor of C++
GPG public key ID: 0x8cb0d0acb5cd81ec209c6cdfbd1a0e09c2f836c0



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[Dspace-tech] Add Browse fields to specific collection only

[Nemiz, Elvi]

Dear All,


Is it possible to add browse fields to a specific collection only? Since
other collections don't have the metadata that I'm trying to add and
clicking the browse link will result to "Sorry, there are no results for
this browse". I'm using DSpace 3.2 and using the the standard RDBMS Browse
Configuration.

Thanks in advance and regards,
Elvi
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