[Dspace-tech] Code not Present when deployed

2015-08-25 Thread Keith Jones
Hi,

I am working on upgrading from version 3.2 to version 5.3. In version 3.2 I
created a java class to do a specific task for our repository. When
deployed the compiled class would sit here in the area:

webapps/ROOT/WEB-INF/classes/org/dspace/app/xmlui/aspect/eperson

When I looked for this area in version 5.3, nothing exists in the
webapps/ROOT/WEB-INF/classes folder.

When building version 5.3, I download the source code and build it locally,
but now my custom class is not appearing.

Not sure why I'm not getting this area to appear in the tomcat WEB-INF area.

Thanks
Keith
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Re: [Dspace-tech] Front Page Build

2015-08-14 Thread Keith Jones
Thanks Helix84,

Thank did the trick. This exchange definitely helped me get a better
understanding. I really appreciate the help you've given me.

Thanks
Keith

On Thu, Aug 13, 2015 at 4:35 PM, helix84 heli...@centrum.sk wrote:

 On Thu, Aug 13, 2015 at 7:21 PM, Keith Jones mad...@udel.edu wrote:

 Do you think it is causing your code some problems. When I leave you code
 out this works, but when I have your code in it doesn't.


 Most certainly. This is what builds your collection/community structure to
 be styled as collapsible. Replace
 xsl:apply-templates /
 with your
 ul ...
 ...
 /ul
 and it should work.


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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[Dspace-tech] Front Page Build

2015-08-13 Thread Keith Jones
Hi,

I'm working on Dspace version 5.3 XMLUI and I want to make some changes to
the front page. Which XSLT file should I edit. I'm looking to remove the
community list from the front page. I've tried over-riding it with a custom
process but doing so changes the custom function of expanding list on the
community page.

Thanks
Keith
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Re: [Dspace-tech] Front Page Build

2015-08-13 Thread Keith Jones
Hi Helix84,

I've actually implemented the over-ride suggestion you gave a few years
ago. It works in removing the community list from the front page, but in
doing so, it breaks my changes to the community list page. On the community
list page I'm using CollapsibleList.js to manage the community list. When I
put in the following:

xsl:template name=add_frontpage_advancedsearch
match=dri:div[@id='aspect.discovery.SiteViewer.div.front-page-search']/dri:p[2]
xsl:apply-templates /
a
href=/advanced-searchi18n:textxmlui.dri2xhtml.structural.search-advanced/i18n:text/a
/xsl:template

It works, but now my ColapsibleList no longer works.



On Thu, Aug 13, 2015 at 8:25 AM, helix84 heli...@centrum.sk wrote:

 Hi Keith,

 XMLUI isn't organized around files but rather around templates, some of
 which are shared among different pages.

 You probably already figured out [1]. Now you just need [2] to distinguish
 between the homepage and /community-list (@target).

 [1]
 https://wiki.duraspace.org/display/DSPACE/TechnicalFAQ#TechnicalFAQ-HowdoIremovethesearchboxfromthefrontpageinXMLUI
 ?
 [2]
 https://wiki.duraspace.org/display/DSPACE/TechnicalFAQ#TechnicalFAQ-HowcanIchangewhatisdisplayedinXMLUIforaparticularcollection
 ?



 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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Re: [Dspace-tech] Front Page Build

2015-08-13 Thread Keith Jones
Helix,

Thanks for the help, the code is working and will remove the list from the
home page.

Here is my problem.
Currently in production we are using collapsible list for the community
browse page, which you can see here:
http://udspace.udel.edu/community-list. This is in version 3.1 using the
XMLUI. I was able to remove the community list from the main page but
commenting out the template call in the xslt, I did not use the overriding
template method.

When I use the code provided, the collapsible list will partly work, but
the arrow icons do not appear, when viewing the community list.

Thanks
Keith

On Thu, Aug 13, 2015 at 9:07 AM, helix84 heli...@centrum.sk wrote:

 Try this:

 xsl:template name=hide_homepage_community-list
 match=dri:div[@id='aspect.artifactbrowser.CommunityBrowser.div.comunity-browser']
 xsl:if
 test=/dri:document/dri:meta/dri:pageMeta/dri:metadata[@element='request'][@qualifier='URI']/text()
 xsl:apply-templates /
 /xsl:if
 /xsl:template

 It hides the community browser unless the request URI is non-empty (like
 /community-list).


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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Re: [Dspace-tech] Front Page Build

2015-08-13 Thread Keith Jones
Helix,

After looking over my changes, I did have to add this to the utils.xsl file:

xsl:choose
  xsl:when
test=/dri:document/dri:body/dri:div[@id='aspect.artifactbrowser.CommunityBrowser.div.comunity-browser']
ul class=collapsibleList
li
xsl:attribute name=class
xsl:textds-artifact-item /xsl:text
xsl:choose
xsl:when test=@type='DSpace Community'
xsl:textcommunity /xsl:text
/xsl:when
xsl:otherwise
xsl:textcollection /xsl:text
/xsl:otherwise
/xsl:choose
xsl:choose
xsl:when test=position() mod 2 = 0even/xsl:when
xsl:otherwiseodd/xsl:otherwise
/xsl:choose
/xsl:attribute
xsl:apply-templates select=document($externalMetadataURL)
mode=summaryList/
xsl:apply-templates /
/li
/ul
  /xsl:when
  xsl:otherwise

Do you think it is causing your code some problems. When I leave you code
out this works, but when I have your code in it doesn't.

Thanks
Keith


On Thu, Aug 13, 2015 at 11:01 AM, helix84 heli...@centrum.sk wrote:

 The code I sent you tries to be as non-invasive as possible. When you add
 the template, the only the DRI output of the homepage should change but not
 the DRI output of the community-list. Therefore, if your collapse/expand
 widgets are just css/js, they should continue to work. If, however, they do
 any modifications to XSLT, that may change how the community-list DRI is
 rendered and it's possible my snippet interferes with it somehow. Check
 whether there are any differences in community-list DRI between how Mirage
 renders it and your theme renders it.

 On Thu, Aug 13, 2015 at 4:25 PM, Keith Jones mad...@udel.edu wrote:

 Helix,

 Thanks for the help, the code is working and will remove the list from
 the home page.

 Here is my problem.
 Currently in production we are using collapsible list for the community
 browse page, which you can see here:
 http://udspace.udel.edu/community-list. This is in version 3.1 using the
 XMLUI. I was able to remove the community list from the main page but
 commenting out the template call in the xslt, I did not use the overriding
 template method.

 When I use the code provided, the collapsible list will partly work, but
 the arrow icons do not appear, when viewing the community list.

 Thanks
 Keith

 On Thu, Aug 13, 2015 at 9:07 AM, helix84 heli...@centrum.sk wrote:

 Try this:

 xsl:template name=hide_homepage_community-list
 match=dri:div[@id='aspect.artifactbrowser.CommunityBrowser.div.comunity-browser']
 xsl:if
 test=/dri:document/dri:meta/dri:pageMeta/dri:metadata[@element='request'][@qualifier='URI']/text()
 xsl:apply-templates /
 /xsl:if
 /xsl:template

 It hides the community browser unless the request URI is non-empty (like
 /community-list).


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette




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Re: [Dspace-tech] Fresh Install of DSpace 5.3

2015-08-11 Thread Keith Jones
Kim,

I ran the following command: mvn -U package clean for version 5.3.

I then ran the following command mvn -U package, and it compiled without
error.

Keith

On Mon, Aug 10, 2015 at 6:59 PM, Kim Shepherd kim.sheph...@gmail.com
wrote:

 Hi Keith, could you confirm the maven command(s) you're using to build
 DSpace, and which version of maven you're using?
 It seems like the assembly goal is trying to run before the package goal
 has completed...

 Cheers

 Kim

 M: k...@shepherd.nz
 T: @kimshepherd
 P: +6421883635

 0CCB D957 0C35 F5C1 497E CDCF FC4B ABA3 2A1A FAEC
 https://keybase.io/kshepherd

 On 11 August 2015 at 07:18, Keith Jones mad...@udel.edu wrote:

 Hi,

 I just downloaded the source code for DSpace 5.3 and went to build it,
 but got the following error:

 [ERROR] Failed to execute goal
 org.apache.maven.plugins:maven-assembly-plugin:2.4.1:single (default) on
 project dspace: Failed to create assembly: Error adding file
 'org.dspace.modules:additions:jar:5.3' to archive:
 /export/home/putnam/dspace/SOFTWARE/dspace-5.3-src-release/dspace/modules/additions/target/additions-5.3.jar
 isn't a file. - [Help 1]

 Any help will be appreciated.

 Thanks


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[Dspace-tech] Fresh Install of DSpace 5.3

2015-08-10 Thread Keith Jones
Hi,

I just downloaded the source code for DSpace 5.3 and went to build it, but
got the following error:

[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-assembly-plugin:2.4.1:single (default) on
project dspace: Failed to create assembly: Error adding file
'org.dspace.modules:additions:jar:5.3' to archive:
/export/home/putnam/dspace/SOFTWARE/dspace-5.3-src-release/dspace/modules/additions/target/additions-5.3.jar
isn't a file. - [Help 1]

Any help will be appreciated.

Thanks
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Re: [Dspace-tech] Javascript disabled on DSpace?

2015-04-02 Thread Keith Jones
I just finish trying it with maven 3.2.5, previously I had 3.2.3 but I'm
still getting the same compile error.

[INFO]
/export/home/putnam/dspace/SOFTWARE/dspace-5.1-src-release/dspace/modules/xmlui-mirage2/target/themes/Mirage2/
node/with_new_path.sh: PATH=$(dirname $(readlink -f
/export/home/putnam/dspace/SOFTWARE/dspace-5.1-src-release/dspace
/modules/xmlui-mirage2/target/themes/Mirage2/node/with_new_path.sh)):.:/usr/local/bin:/usr/local/sbin:/usr/local/samb
a/bin:/usr/local/ant/bin:/usr/local/maven/bin:/usr/sfw/bin:/usr/sbin:/usr/bin:/etc:/usr/etc:/usr/openwin/bin:/usr/ccs
/bin:/usr/local/local:/opt/csw/bin:/export/home/putnam/mark/bin:/export/home/putnam/dspace/lib/postgresql-9.1-901-1.j
dbc4.jar:/export/home/putnam/dspace/.nvm/nvm.sh: is not an identifier
[ERROR] MojoFailureException:
org.apache.maven.plugin.MojoFailureException: Failed to run task
at
com.github.eirslett.maven.plugins.frontend.mojo.NpmMojo.execute(NpmMojo.java:45)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
at
com.soebes.maven.plugins.iterator.ExecutorMojo.executeMojo(ExecutorMojo.java:302)
at
com.soebes.maven.plugins.iterator.ExecutorMojo.execute(ExecutorMojo.java:235)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at
org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuild
er.java:51)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:120)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:355)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:155)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:584)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:216)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:160)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at
org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at
org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by:
com.github.eirslett.maven.plugins.frontend.lib.TaskRunnerException: 'npm
install --color=false' failed. (e
rror code 1)
at
com.github.eirslett.maven.plugins.frontend.lib.NodeTaskExecutor.execute(NodeTaskExecutor.java:38)
at
com.github.eirslett.maven.plugins.frontend.mojo.NpmMojo.execute(NpmMojo.java:43)
... 24 more
[INFO] -- (Mirage2)
com.github.eirslett:frontend-maven-plugin:0.0.16:grunt
[INFO] Running 'grunt classic_mirage_color_scheme no-compass-prod
--no-color' in /export/home/putnam/dspace/SOFTWARE/
dspace-5.1-src-release/dspace/modules/xmlui-mirage2/target/themes/Mirage2
[INFO]
/export/home/putnam/dspace/SOFTWARE/dspace-5.1-src-release/dspace/modules/xmlui-mirage2/target/themes/Mirage2/
node/with_new_path.sh: PATH=$(dirname $(readlink -f
/export/home/putnam/dspace/SOFTWARE/dspace-5.1-src-release/dspace
/modules/xmlui-mirage2/target/themes/Mirage2/node/with_new_path.sh)):.:/usr/local/bin:/usr/local/sbin:/usr/local/samb
a/bin:/usr/local/ant/bin:/usr/local/maven/bin:/usr/sfw/bin:/usr/sbin:/usr/bin:/etc:/usr/etc:/usr/openwin/bin:/usr/ccs
/bin:/usr/local/local:/opt/csw/bin:/export/home/putnam/mark/bin:/export/home/putnam/dspace/lib/postgresql-9.1-901-1.j
dbc4.jar:/export/home/putnam/dspace/.nvm/nvm.sh: is not an identifier
[ERROR] MojoFailureException:
org.apache.maven.plugin.MojoFailureException: Failed to run task
at
com.github.eirslett.maven.plugins.frontend.mojo.GruntMojo.execute(GruntMojo.java:36)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
at
com.soebes.maven.plugins.iterator.ExecutorMojo.executeMojo(ExecutorMojo.java:302)
at
com.soebes.maven.plugins.iterator.ExecutorMojo.execute(ExecutorMojo.java:235)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
  

[Dspace-tech] Mirage 2

2015-03-27 Thread Keith Jones
Hi All,

I'm in the process of upgrading a test instance of DSPACE from 3.2 to 5.1.
I have it up and running with Mirage but when I re-compiled to use the
Mirage 2 theme the system is up but does not display properly.

Here is the error I'm seeing in the tomcat logs:

Mar 26, 2015 11:39:27 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
Mar 26, 2015 11:39:28 AM org.apache.catalina.core.ApplicationContext log
INFO: Apache Cocoon Spring Configurator v1.0.2 is running in mode 'prod'.
Mar 26, 2015 11:39:28 AM org.apache.catalina.core.StandardContext
listenerStart
SEVERE: Exception sending context initialized event to listener instance of
class org.springframework.web.context.Conte
xtLoaderListener
org.springframework.beans.factory.BeanCreationException: Error creating
bean with name 'dspace.eventService' defined in
 ServletContext resource [/WEB-INF/spring/applicationContext.xml]:
Instantiation of bean failed; nested exception is or
g.springframework.beans.factory.BeanDefinitionStoreException: Factory
method [public org.dspace.services.EventService o
rg.dspace.utils.DSpace.getEventService()] threw exception; nested exception
is java.lang.IllegalStateException: DSpace
kernel cannot be null
at
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResol
ver.java:581)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(A
bstractAutowireCapableBeanFactory.java:1015)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAuto
wireCapableBeanFactory.java:911)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCa
pableBeanFactory.java:485)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapa
bleBeanFactory.java:456)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegi
stry.java:225)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListabl
eBeanFactory.java:585)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractAppli
cationContext.java:913)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:464)
at
org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:38
5)
at
org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:284)
at
org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:111)
at
org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4791)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5285)
at
org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at
org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at
org.apache.catalina.core.StandardHost.addChild(StandardHost.java:633)
at
org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1114)
at
org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1673)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at
java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
Caused by: org.springframework.beans.factory.BeanDefinitionStoreException:
Factory method [public org.dspace.services.E
ventService org.dspace.utils.DSpace.getEventService()] threw exception;
nested exception is java.lang.IllegalStateExcep
tion: DSpace kernel cannot be null
at
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrateg
y.java:169)
at
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResol
ver.java:570)
... 28 more
Caused by: java.lang.IllegalStateException: 

[Dspace-tech] Flyway Migration Error

2015-03-17 Thread Keith Jones
Hi All,

I'm currently attempting to upgrade from dspace version 3.2 to dspace
version 5.1 but I'm getting a java.sql.SQLException which is leading to a
black page:

Here's what I have installed

OS : Solaris
Java: 1.7.0_11
Maven: 3.2.3
Ant: 1.8.2
Postgres: 9.4
Tomcat: 7.0.34

I'm able to both build and compile without error, I've deployed both xmlui
and solr into the webapps area.

Here is the error I'm getting in the logfile:

2015-03-17 14:03:48,848 ERROR org.dspace.storage.rdbms.DatabaseManager @
SQL getDataSource Error -
java.sql.SQLException: Flyway migration error occurred
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:430)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338)
at
org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373)
at
org.dspace.storage.rdbms.DatabaseManager.getDataSource(DatabaseManager.java:650)
at
org.dspace.storage.rdbms.DatabaseManager.getConnection(DatabaseManager.java:629)
at org.dspace.core.Context.init(Context.java:121)
at org.dspace.core.Context.init(Context.java:95)
at org.dspace.browse.IndexBrowse.main(IndexBrowse.java:637)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at
org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)
at
org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)
Caused by: org.flywaydb.core.api.FlywayException: Migration failed !
at
org.flywaydb.core.internal.resolver.jdbc.JdbcMigrationExecutor.execute(JdbcMigrationExecuto
r.java:47)
at
org.flywaydb.core.internal.command.DbMigrate$5.doInTransaction(DbMigrate.java:287)
at
org.flywaydb.core.internal.command.DbMigrate$5.doInTransaction(DbMigrate.java:285)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:7
2)
at
org.flywaydb.core.internal.command.DbMigrate.applyMigration(DbMigrate.java:285)
at
org.flywaydb.core.internal.command.DbMigrate.access$800(DbMigrate.java:46)
at
org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:207)
at
org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:156)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:7
2)
at
org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:156)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:864)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:811)
at org.flywaydb.core.Flyway.execute(Flyway.java:1171)
at org.flywaydb.core.Flyway.migrate(Flyway.java:811)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419)
... 13 more
Caused by: org.postgresql.util.PSQLException: ERROR: constraint
metadatavalue_item_id_fkey of relati
on metadatavalue does not exist
at
org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2103)
at
org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1836)
at
org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:257)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:512)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:38
8)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:381)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.jav
a:172)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.jav
a:172)
at
org.apache.commons.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.jav
a:172)
at
org.dspace.storage.rdbms.MigrationUtils.dropDBConstraint(MigrationUtils.java:106)
at
org.dspace.storage.rdbms.migration.V5_0_2014_09_25__DS_1582_Metadata_For_All_Objects_drop_c
onstraint.migrate(V5_0_2014_09_25__DS_1582_Metadata_For_All_Objects_drop_constraint.java:61)
at
org.flywaydb.core.internal.resolver.jdbc.JdbcMigrationExecutor.execute(JdbcMigrationExecuto
r.java:45)
... 27 more


Thanks
Keith
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Re: [Dspace-tech] Flyway Migration Error

2015-03-17 Thread Keith Jones
Brian,

Thanks for the reply.

UI used both of the lines you provided in and each time postgres said the
table was altered, but when I ran the migration tool again I was meet with
the same error.

Keith

On Tue, Mar 17, 2015 at 3:38 PM, Brian Freels-Stendel bfre...@unm.edu
wrote:

  Hi Keith,



 You'll need to update the foreign key constraint.  My bet is that it's
 named $1 right now, but it needs to be named metadatavalue_item_id_fkey.



 I think the SQL would be



 alter table metadatavalue drop constraint '$1';



 followed by



 alter table metadatavalue add constraint '$metadatavalue_item_id_fkey'
 foreign key ('item_id') references item ('item_id') on delete no action on
 update no action;



 *But you'll really want to make a backup first!*



 I think some of us with databases dating back to the early days have
 auto-named constraints, and they're breaking the flyway stuff.



 B--







 *From:* Keith Jones [mailto:mad...@udel.edu]
 *Sent:* Tuesday, March 17, 2015 12:56 PM
 *To:* dspace-tech@lists.sourceforge.net
 *Subject:* [Dspace-tech] Flyway Migration Error



 Hi All,



 I'm currently attempting to upgrade from dspace version 3.2 to dspace
 version 5.1 but I'm getting a java.sql.SQLException which is leading to a
 black page:



 Here's what I have installed



 OS : Solaris

 Java: 1.7.0_11

 Maven: 3.2.3

 Ant: 1.8.2

 Postgres: 9.4

 Tomcat: 7.0.34



 I'm able to both build and compile without error, I've deployed both xmlui
 and solr into the webapps area.



 Here is the error I'm getting in the logfile:



 2015-03-17 14:03:48,848 ERROR org.dspace.storage.rdbms.DatabaseManager @
 SQL getDataSource Error -

 java.sql.SQLException: Flyway migration error occurred

 at
 org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:430)

 at
 org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338)

 at
 org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373)

 at
 org.dspace.storage.rdbms.DatabaseManager.getDataSource(DatabaseManager.java:650)

 at
 org.dspace.storage.rdbms.DatabaseManager.getConnection(DatabaseManager.java:629)

 at org.dspace.core.Context.init(Context.java:121)

 at org.dspace.core.Context.init(Context.java:95)

 at org.dspace.browse.IndexBrowse.main(IndexBrowse.java:637)

 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

 at
 sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

 at
 sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

 at java.lang.reflect.Method.invoke(Method.java:601)

 at
 org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:225)

 at
 org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:77)

 Caused by: org.flywaydb.core.api.FlywayException: Migration failed !

 at
 org.flywaydb.core.internal.resolver.jdbc.JdbcMigrationExecutor.execute(JdbcMigrationExecuto

 r.java:47)

 at
 org.flywaydb.core.internal.command.DbMigrate$5.doInTransaction(DbMigrate.java:287)

 at
 org.flywaydb.core.internal.command.DbMigrate$5.doInTransaction(DbMigrate.java:285)

 at
 org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:7

 2)

 at
 org.flywaydb.core.internal.command.DbMigrate.applyMigration(DbMigrate.java:285)

 at
 org.flywaydb.core.internal.command.DbMigrate.access$800(DbMigrate.java:46)

 at
 org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:207)

 at
 org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:156)

 at
 org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:7

 2)

 at
 org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:156)

 at org.flywaydb.core.Flyway$1.execute(Flyway.java:864)

 at org.flywaydb.core.Flyway$1.execute(Flyway.java:811)

 at org.flywaydb.core.Flyway.execute(Flyway.java:1171)

 at org.flywaydb.core.Flyway.migrate(Flyway.java:811)

 at
 org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419)

 ... 13 more

 Caused by: org.postgresql.util.PSQLException: ERROR: constraint
 metadatavalue_item_id_fkey of relati

 on metadatavalue does not exist

 at
 org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2103)

 at
 org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1836)

 at
 org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:257)

 at
 org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:512)

 at
 org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:38

 8)

 at
 org.postgresql.jdbc2

Re: [Dspace-tech] Flyway Migration Error

2015-03-17 Thread Keith Jones
(DbMigrate.java:285)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:7
2)
at
org.flywaydb.core.internal.command.DbMigrate.applyMigration(DbMigrate.java:285)
at
org.flywaydb.core.internal.command.DbMigrate.access$800(DbMigrate.java:46)
at
org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:207)
at
org.flywaydb.core.internal.command.DbMigrate$2.doInTransaction(DbMigrate.java:156)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java
2)
at
org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:156)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:864)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:811)
at org.flywaydb.core.Flyway.execute(Flyway.java:1171)
at org.flywaydb.core.Flyway.migrate(Flyway.java:811)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419)
... 22 more
Caused by: org.postgresql.util.PSQLException: ERROR: insert or update on
table metadatavalue violate
s foreign key constraint $metadatavalue_item_id_fkey
  Detail: Key (resource_id)=(38) is not present in table item.
at
org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2103)
at
org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1836)
at
org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:257)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:512)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:37
4)
at
org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:366)
at
org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
at
org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
at
org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
at
org.flywaydb.core.internal.dbsupport.JdbcTemplate.executeStatement(JdbcTemplate.java:235)
at
org.flywaydb.core.internal.dbsupport.SqlScript.execute(SqlScript.java:89)
... 37 more


Something still seems to be off with the metadatavalues. This database goes
all the back to 1.4, I think.

Any additional help will be greatly appreciated.

Thanks
Keith

On Tue, Mar 17, 2015 at 3:59 PM, Brian Freels-Stendel bfre...@unm.edu
wrote:

  Hi,



 I was wrong in the new name: it should not have a $ in front of it, just
 metadatavalue_item_id_fkey



 In a very old version of SQLManager, this is the SQL it says it's going to
 run:



 ALTER TABLE public.metadatavalue

   DROP CONSTRAINT $1 RESTRICT;



 ALTER TABLE public.metadatavalue

   ADD CONSTRAINT metadatavalue_item_id_fkey FOREIGN KEY (item_id)

 REFERENCES public.item(item_id)

 ON DELETE NO ACTION

 ON UPDATE NO ACTION

 NOT DEFERRABLE;



 Sorry about the typo, and here's hoping!



 B--



 *From:* Keith Jones [mailto:mad...@udel.edu]
 *Sent:* Tuesday, March 17, 2015 1:53 PM
 *To:* Brian Freels-Stendel
 *Cc:* dspace-tech@lists.sourceforge.net
 *Subject:* Re: [Dspace-tech] Flyway Migration Error



 Brian,



 Thanks for the reply.



 UI used both of the lines you provided in and each time postgres said the
 table was altered, but when I ran the migration tool again I was meet with
 the same error.



 Keith



 On Tue, Mar 17, 2015 at 3:38 PM, Brian Freels-Stendel bfre...@unm.edu
 wrote:

  Hi Keith,



 You'll need to update the foreign key constraint.  My bet is that it's
 named $1 right now, but it needs to be named metadatavalue_item_id_fkey.



 I think the SQL would be



 alter table metadatavalue drop constraint '$1';



 followed by



 alter table metadatavalue add constraint '$metadatavalue_item_id_fkey'
 foreign key ('item_id') references item ('item_id') on delete no action on
 update no action;



 *But you'll really want to make a backup first!*



 I think some of us with databases dating back to the early days have
 auto-named constraints, and they're breaking the flyway stuff.



 B--







 *From:* Keith Jones [mailto:mad...@udel.edu]
 *Sent:* Tuesday, March 17, 2015 12:56 PM
 *To:* dspace-tech@lists.sourceforge.net
 *Subject:* [Dspace-tech] Flyway Migration Error



 Hi All,



 I'm currently attempting to upgrade from dspace version 3.2 to dspace
 version 5.1 but I'm getting a java.sql.SQLException which is leading to a
 black page:



 Here's what I have installed



 OS : Solaris

 Java: 1.7.0_11

 Maven: 3.2.3

 Ant: 1.8.2

 Postgres: 9.4

 Tomcat: 7.0.34



 I'm able to both build and compile without error, I've deployed both xmlui
 and solr into the webapps area.



 Here is the error I'm getting in the logfile:



 2015-03-17 14:03:48,848 ERROR org.dspace.storage.rdbms.DatabaseManager @
 SQL getDataSource Error

Re: [Dspace-tech] Solr Shard Not Working

2014-09-23 Thread Keith Jones


Hi Adan,

Right now we are running DSpace vwersion 3.2 in a Tomcat 7.0.34 version.

On Tue, 23 Sep 2014, Adan Roman wrote:


Hi Keith

Have you deployed a DSpace 4.x or higer in a Tomcat 6 or lower?
It seems to be a mismatch between java and libraries from dspace.

Regards


Hi All,

I've been trying to run the following command:
dspace stats-util --shard-solr-index

But the procees produces the following error:

Exception:
org.apache.solr.client.solrj.response.QueryResponse.getFacetRanges()Ljava/util/List;
java.lang.NoSuchMethodError:
org.apache.solr.client.solrj.response.QueryResponse.getFacetRanges()Ljava/util/List;


Has anyone one else experienced this problem?

Thanks


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Re: [Dspace-tech] OAI-PMH not working

2013-10-16 Thread Keith Jones

Hi,

I checked the setting, we had it set for solr, but we are running solr as 
well. I set it to database(Postgres), stopped tomcat and restarted tomcat 
and I'm still not getting results.

Here is our url:

http://udspace.udel.edu/dspace-oai/request?verb=Identify

On Wed, 16 Oct 2013, Kostas Stamatis wrote:

 Hi,

 DSpace 3 and above integrates xoai that uses solr indexing to display the 
 items. Are you using solr or Postgres/Oracle?
 In the latter case, keep in mind that in the file 
 {...}/config/modules/oai.cfg the option storage, at the very beginning, 
 must be equal to database and not solr, which is the default value.

 Regards,

 Kostas



 On Oct 15, 2013, at 6:39 PM, Keith Jones ke...@cutter.lib.udel.edu wrote:



 We have an installation of DSpace version 3.2, which I recently updated a
 test server. I'm still not able to get the OAI-PMH interface to work, has
 anyone been able to use the OAI-PMH?
 the verb identify will present an response, sets will sow but I'm not able
 to retrieve records or identifiers.

 Thanks
 Keith


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[Dspace-tech] OAI-PMH not working

2013-10-15 Thread Keith Jones


We have an installation of DSpace version 3.2, which I recently updated a 
test server. I'm still not able to get the OAI-PMH interface to work, has 
anyone been able to use the OAI-PMH?
the verb identify will present an response, sets will sow but I'm not able 
to retrieve records or identifiers.

Thanks
Keith


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Re: [Dspace-tech] Edit Item display Issue

2012-08-30 Thread Keith Jones


On Tue, 28 Aug 2012, helix84 wrote:

 Hi Keith,
 which version are you using? I just checked this on demo.dspace.org
 which runs the latest code (to become 3.0) from git and the problem is
 not present there.

I'm running version 1.8.2. I'm using the new messages.xml. I've checked in 
the deployed webapps area, and the entry is in the deployed messages.xml 
file.



 I had the same problem when I copied over a customized messages.xml
 file from 1.7 to 1.8 (reordering was a new feature in 1.8) and the
 messages were missing there (obviously). You're saying that they are
 in your messages.xml now. Could you 1) clean your Cocoon cache [1] and
 2) restart Tomcat and check if the problem still persists?


Followed the procedure to clear the cache through the new interface 
option. Then I shutdown Tomcat and restarted, but the problem still 
persists.

Thanks

Keith

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Re: [Dspace-tech] Edit Item display Issue

2012-08-30 Thread Keith Jones

Helix84,

I've edited other things in the messages.xml and the edited items show up 
correctly. In this instance I did not edit the entries, they are not being 
displayed properly, but the matching entry exist in the file.

On Thu, 30 Aug 2012, helix84 wrote:

 I can't confirm that on 1.8.2, but then I added things to messages.xml
 so it's not a default installation.
 Can anyone here who hasn't edited messages.xml confirm it?

 Regards,
 ~~helix84


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[Dspace-tech] Edit Item display Issue

2012-08-28 Thread Keith Jones


Hi All,

I'm not sure if this problem is a reported problem.

When I edit and Item and then choose the Item Bitstreams tab the message 
property items xmlui.administrative.item.EditItemBitstreamsForm.order_up 
and xmlui.administrative.item.EditItemBitstreamsForm.order_down are not 
being displayed. I've checked the message properties file and they are 
listed but still not displayed.

Anyone else seeing this issue.

Thanks
Keith

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Re: [Dspace-tech] Problem with New Config file structure

2012-08-13 Thread Keith Jones

Yes I tried it and it worked. I was trying to follow the new 
authentication
model, but putting it in the dspace.cfg did the trick.

On Fri, 10 Aug 2012, helix84 wrote:

 Hi Keith, based on that source line I think it should simply go to
 dspace.cfg as cas.server.url, not to modules. Did you try that?

 Regards,
 ~~helix84


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[Dspace-tech] Problem with New Config file structure

2012-08-10 Thread Keith Jones

Hi All,

I'm in the process of trying to configure my CAS module to run with DSpace 
1.8.2. I'm currently running into a problem where the CAS class is unable 
to find the cas.server.url, and is getting a 
java.lang.NullPointerException when it is trying to read the configuration 
parameter.

This is the line of code:

final String authServer = 
ConfigurationManager.getProperty(cas.server.url);

With the new structure of the dspace.cfg, which separates the 
authentication  parameters, I'm having a difficult time trying to figure 
out how the build the configuration paramaters for CAS.

Thanks
Keith

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[Dspace-tech] CAS Authentication and DSpace version 1.8.2

2012-08-07 Thread Keith Jones

Hello,

I'm currently upgrading from dspace 1.7.2 to 1.8.2. I've been using CAS 
Authentication in 1.7.2, and I'm having trouble getting CAS to compile in 
1.8.2. When doing mvn package, the cas client jar is not downloading. 
Also, with the new changes in the config file structure, their is not a 
default config file for CAS, so I'm not sure what to name the file so that 
it will be recognized during the build process.

Thanks
Keith


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[Dspace-tech] Upgrade Problems

2012-08-06 Thread Keith Jones

Hi All,

I currently running DSpace 1.7.2 in production. I've implemented a few 
changes for the installation. I currently have a customized xmlui with a 
added aspect, which is used to display rss links in the navigation. I'm 
currently trying to upgrade the installation from 1.7.2 to 1.8.2 but I'm 
running into a few problems. In my current code base I implemented the 
custom theme in the following code location of: 
dspace-src/dspace-xmlui/dspace-xmlui-webapp/src/main/webapp/themes/. The 
first problem I encountered was that when I created the new webapps area, 
my custom theme was not moved into the build output. Then I moved the new 
theme into the module area which did make the theme show up in the build 
output. Then I ran into the problem where my deployed webapp is not able 
to find the sitemap for my custom aspect. This aspect is working in 1.7.2 
but not in 1.8.2. The aspect code is locate here: 
dspace-src/dspace-xmlui/dspace-xmlui-api/src/main/resources/aspects, and 
the aspect sitemap is located here: 
dspace-src/dspace-xmlui/dspace-xmlui-api/src/main/resources/aspects/Extra.

When I deploy my new xmlui, I'm getting the following error:
org.apache.excalibur.source.SourceNotFoundException: 
resource://aspects/Extra/sitemap.xmap

I could really use some help on trying to figure out why the system is not 
able to find the sitemap for my aspect.

Thanks
Keith

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[Dspace-tech] Cas Authentication

2010-08-03 Thread Keith Jones

Has anyone succesfully tied in CAS authentication method with their DSpace 
instance?  I'm trying to get this working for DSpace 1.6.2 within the 
XMLUI.

Thanks


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[Dspace-tech] CAS Authentication and Dspace

2010-07-26 Thread Keith Jones

Hi,

I'm trying to tie our CAS authentication into our Dspace instance.  I've 
added the CAS java class and updated the config file to point to the 
Central authentication server.  When I click on the login link I'm 
redirected to the CAS login page, but when I enter the login method the 
page just reloads the login screen.  I'm not being sent back to the Dspace 
server to resume login. When returning to control to dspace what class 
will process the CAS server return call?

Thanks

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[Dspace-tech] Feedback form error

2008-09-05 Thread Keith Jones


We are running a 1.5 dspace install and I've just come across the 
following error.

When the feedback form is used a Null pointer Exception is thrown. I've 
checked that an email is currently set and the mail server setting is fine 
as well.  I am notified that an error is being reported but I'm not 
getting a message from the feedback form.

 null
=
java.lang.NullPointerException
at 
javax.mail.internet.InternetAddress.parse(InternetAddress.java:595)
at 
javax.mail.internet.InternetAddress.parse(InternetAddress.java:555)
at 
javax.mail.internet.InternetAddress.init(InternetAddress.java:91)
at org.dspace.core.Email.send(Email.java:310)
at 
org.dspace.app.webui.servlet.FeedbackServlet.doDSGet(FeedbackServlet.java:157)
at 
org.dspace.app.webui.servlet.FeedbackServlet.doDSPost(FeedbackServlet.java:188)
at 
org.dspace.app.webui.servlet.DSpaceServlet.processRequest(DSpaceServlet.java:147)
at 
org.dspace.app.webui.servlet.DSpaceServlet.doPost(DSpaceServlet.java:105)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:710)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:803)
at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269)
at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:174)
at 
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
at 
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
at 
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
at 
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
at 
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
at java.lang.Thread.run(Thread.java:595)


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[Dspace-tech] Error in the JDOM

2008-07-14 Thread Keith Jones

Hello,

We have recently upgraded to Dspace version 1.5, running on a Solaris 
machine using Tomcat 5.5 and Postgres 8.1.  After the upgraded I'm now 
getting the following internal error:

Exception:
org.jdom.IllegalDataException: The data Text from the item . is not 
legal for a JDOM attribute: 0x15 is not a legal XML character.
 at org.jdom.Attribute.setValue(Attribute.java:486)
 at org.jdom.Attribute.init(Attribute.java:229)
 at org.jdom.Attribute.init(Attribute.java:252)
 at org.jdom.Element.setAttribute(Element.java:1109)
 at
org.dspace.content.crosswalk.XHTMLHeadDisseminationCrosswalk.disseminateList
(XHTMLHeadDisseminationCrosswalk.java:243)
.


Has anyone come across this error.

Thanks
Keith Jones

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[Dspace-tech] Item Removal Problem

2008-05-28 Thread Keith Jones


Hello,

We currently are running and instance of Dspace 1.4.2, with a Postgres 
database.

We recently ran into the following problem.

Person A has submitted an item, which is sent to Work Flow Step 2

Person B initially rejected the submission and sent it back to Person A.

Person A made changes, and re-submitted the item.

Person B approved the submission and a entry was made available to the 
public.

But a funny thing happened, Person A still has a the listed item stuck in 
their submission queue and are unable to delete the item.  They actually 
have 2 copies of the same record listed in their workflow.

Has anyone experienced this problem.

Question 2:
I can download Dspace 1.5 source without Maven, but can you compile the 
source without the source being downloaded via Maven?


Thanks
Keith

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[Dspace-tech] License Change

2007-07-09 Thread Keith Jones

Hello Everyone,

If I wanted to change the license on a dspace installation I know this 
does not change the license for items that have previously been submitted. 
Is there a way to change the license for previously submitted items.


Thanks
Keith



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Re: [Dspace-tech] License Change

2007-07-09 Thread Keith Jones

Thanks James,

What I'm faced with is typo type error and wanting to correct the problem 
with out changing the underlying handles through a re-submission of items.


On Mon, 9 Jul 2007, James Rutherford wrote:

 On Mon, Jul 09, 2007 at 11:22:03AM -0400, Keith Jones wrote:
 If I wanted to change the license on a dspace installation I know this
 does not change the license for items that have previously been submitted.
 Is there a way to change the license for previously submitted items.

 This might not be a good thing to do en-masse. If your authors have
 granted a license, you probably can't go and change it without having
 them grant the new one, surely? Unless it's a typo or something...

 cheers,

 Jim

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Re: [Dspace-tech] Fwd: Problem with Data Provider Validation

2007-06-06 Thread Keith Jones

Thanks for the additional input.  I turned on debug and here is what 
output I am getting in the log file.

2007-06-06 14:47:48,393 INFO  org.dspace.app.oai.DSpaceOAICatalog @ 
anonymous:no
_context:oai_request:verb=listIdentifiers,from=0001-01-01T00:00:00Z,until=-1
2-31T23:59:59Z,set=null,metadataPrefix=oai_dc
2007-06-06 14:47:49,008 DEBUG org.dspace.search.Harvest @ 
anonymous::harvest SQL
:SELECT handle.handle, handle.resource_id, item.withdrawn, 
item.last_modified FR
OM handle, item WHERE handle.resource_type_id=2 AND 
handle.resource_id=item.item
_id  AND item.last_modified = ?  AND item.last_modified = ?  ORDER BY 
handle.r
esource_id
2007-06-06 14:47:49,009 DEBUG org.dspace.storage.rdbms.DatabaseManager @ 
Running
  query SELECT handle.handle, handle.resource_id, item.withdrawn, 
item.last_modi
fied FROM handle, item WHERE handle.resource_type_id=2 AND 
handle.resource_id=it
em.item_id  AND item.last_modified = ?  AND item.last_modified = ? 
ORDER BY h
andle.resource_id
2007-06-06 14:47:49,782 INFO  org.dspace.app.oai.DSpaceOAICatalog @ 
anonymous:no
_context:oai_error:no_items_match



On Wed, 6 Jun 2007, Stuart Lewis [sdl] wrote:

 Hi Jodi / Keith,

 However this request returns error code=badArgument.
 http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiers

 The 'badArgument' occurs because you need to specify which format you want
 the metadata in.

 So the following works:

 http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiersmetadata
 Prefix=oai_dc

 However This still suffers from the problem of no records being returned
 when no dates are specified.

 As you have noticed, if you add a 'from' records are returned. (Not so if
 you just add a 'to').

 What should be happening, is OAICat passes a 'null' for 'to' and 'from' to
 org.dspace.search.Harvest.java If it receives null values, it should not do
 any date filtering on the select query. Something must be going wrong here.
 To debug this, we need to see what queries are being run.

 Can you:

 1) Upgrade your logging output to DEBUG (change 'INFO' to 'DEBUG' in
 [dspace]/conf/log4j.properties an then restart tomcat).

 2) Watch you [dspace]/log/dspace.log file as you call the ListIdentifiers
 URL which is returning an empty result set.

 The debug output should show the output that OAICat is passing to
 Harvest.java, and should show the corresponding query that Harvest.java
 calls.

 If you can send these to the list, we can look into the problem further.

 Thanks,


 Stuart
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Re: [Dspace-tech] Fwd: Problem with Data Provider Validation

2007-06-06 Thread Keith Jones


Hi Graham,

I in agreement that the code is working as specified.  My problem occured 
when I tried to register my Dspace instance with the official Open 
Archives registry.  The registry send a listIdentifiers request with no 
from date specified. As such my dspace instance has failed to pass the 
registration test.  I'm trying to determine if this is a configuration 
problem, or could there be bad data that is effecting the data pull.




On Wed, 6 Jun 2007, Graham Triggs wrote:


Not really. The badArgument is valid when you don't specify a
metadataPrefix, and the noRecordsMatch error is valid when there are no
records that match the date range specified.

If you simply include a from timestamp, eg:

http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiersmetadataPrefix=oai_dcfrom=2001-01-01T00:00:00Z

then it works. I don't think there is anything wrong with the harvesting
code per se, it just looks like it is incorrectly interpreting a from
date when you don't specify one.

Although according to the oaicat.properties below, the earliestDatestamp
is set to 2001-01-01T00:00:00Z - exactly what I'm passing in the above
url, and which works!

G

On Tue, 2007-06-05 at 22:37 -0400, Jodi Schneider wrote:

Forwarding this back out to the list for better answers to Keith's
questions.

http://sourceforge.net/tracker/index.php?func=detailaid=1688523group_id=19984atid=319984
mentions the TimeStamp function of *Oracle*. Is the bug also
applicable to Postgres?

http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiersfrom=2007-04-01until=2007-05-15metadataPrefix=oai_dc
works beautifully.

However this request returns error code=badArgument.
http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiers

Can anyone tell Keith how to fix this? Is upgrade to 1.4.2 the answer?
Or...?

-Jodi

PS-Keith, what happens if you change granularity?
i.e. in oaicat.properties change
AbstractCatalog.granularity=-MM-DDThh:mm:ssZ
to
AbstractCatalog.granularity=-MM-DD
-- Forwarded message --
From: Keith Jones [EMAIL PROTECTED]
Date: Jun 5, 2007 3:41 PM
Subject: Re: [Dspace-tech] Problem with Data Provider Validation
To: Jodi Schneider [EMAIL PROTECTED]


Hi Jodi,

Thanks for the help.

At my institution we are using Postgres, would this have any effect on
the
date granularity?

Are you saying that the harvester will not work, unless you are at
version
1.4.2?

I've been able to get subsets if the listidentifiers working, atleast
it
will work when I put in a from date but will not work if no date is
specified.  I'm still getting the following error:

Code=noRecordsMatch, Description=The combination of the values of the
from, until, set, and metadataPrefix arguments results in an empty
list.

With the http request of:

http://dspace.udel.edu:8080/dspace-oai/request, verb=ListIdentifiers,
metadataPrefix=oai_dc

But I can get results with the following http request
http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiersfrom=2007-04-01metadataPrefix=oai_dc

Thanks
Keith

-- Forwarded message --
From: Jodi Schneider [EMAIL PROTECTED]
Date: Jun 5, 2007 9:19 AM
Subject: [Dspace-tech] Problem with Data Provider Validation
To: Dspace Tech dspace-tech@lists.sourceforge.net

Keith,

It looks like your repository is still having this problem. I think
you will need to upgrade to 1.4.2 or change timestamp granularity.

It looks like 1.4.2 fixed a bug regarding  OAI timestamps:
The oracleTimeStampFunction did not correctly account for 20
character
length timestamps (-MM-DDTHH:mm:ssZ), incorrectly treating them as
'-MM-DDTHH:mm:ss.FFZ'.

http://sourceforge.net/tracker/index.php?func=detailaid=1688523group_id=19984atid=319984
---
I compared the file you mention to my default oaicat.properties and it
looks like one block is duplicated. I wouldn't expect this to harm
anything.

AbstractCatalog.oaiCatalogClassName=org.dspace.app.oai.DSpaceOAICatalog
AbstractCatalog.recordFactoryClassName=org.dspace.app.oai.DSpaceRecordFactory
AbstractCatalog.secondsToLive=3600


AbstractCatalog.granularity=-MM-DDThh:mm:ssZ

Best luck, and apologies it took so long to figure this out!

-Jodi
Portable Citations for DSpace

On 5/29/07, Keith Jones  [EMAIL PROTECTED] wrote:

I did not chnage anything in the oaicat.properties.

Here is my properties file:


###
# REMEMBER: ONLY UPDATE THE VERSION IN
dspace/config/templates
# AND THEN RUN dspace/bin/install-configs!
# DO NOT EDIT THE 'LIVE' VERSION!

###

# OAICat Configuration file - see OAICat documentation for
details

# Text surrounded by two '@' symbols is replaced with the
corresponding
# property from dspace.cfg.  For example:
#
# http://dspace.udel.edu:8080/dspace

Re: [Dspace-tech] Fwd: Problem with Data Provider Validation

2007-06-06 Thread Keith Jones


On Wed, 6 Jun 2007, Jodi Schneider wrote:

  PS-Keith, what happens if you change granularity?
  i.e. in oaicat.properties change
  AbstractCatalog.granularity=-MM-DDThh:mm:ssZ
  to
  AbstractCatalog.granularity=-MM-DD


Hi Jodi,

I did make the change suggested above, but the result was the same.

Thanks for all the help you have been providing.

Am I correct in understanding that your Dspace instance is not exhibiting 
the same problem?

Keith

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Re: [Dspace-tech] Problem with Data Provider Validation

2007-05-29 Thread Keith Jones


Hi Claudia,

Yes,

I used both sites and both are reporting and error in the XML returned.

The VlaidateSite failed on the return of the ?verb=Identify call.

And the explorer site returned and error for all the test.



On Tue, 29 May 2007, Claudia Jürgen wrote:


Hi Keith,

did you use the OAI Validation tool:
http://www.openarchives.org/Register/ValidateSite

or the repository explorer http://re.cs.uct.ac.za/ ?

Claudia


Keith Jones schrieb:

Hello,

   We are running DSpace version 1.4.1, and we want to register our 
repository as a OAI data provider.  I went to register but am unable to 
because of the following error:


Malformed response: mismatched tag at line 11, column 62, byte 1114

We are sending back malformed XML when requests are being made.

Any help with this would be appreciated.

Thanks
Keith

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Re: [Dspace-tech] Problem with Data Provider Validation

2007-05-29 Thread Keith Jones


I initial tried using both tools.
Seems like I've made progress, and have passed the first 2 test but now 
the test has failed on the following:

request?verb=ListIdentifiersmetadataPrefix=oai_dc



On Tue, 29 May 2007, Claudia J?rgen wrote:


Hi Keith,

did you use the OAI Validation tool:
http://www.openarchives.org/Register/ValidateSite

or the repository explorer http://re.cs.uct.ac.za/ ?

Claudia


Keith Jones schrieb:

Hello,

   We are running DSpace version 1.4.1, and we want to register our
repository as a OAI data provider.  I went to register but am unable to
because of the following error:

Malformed response: mismatched tag at line 11, column 62, byte 1114

We are sending back malformed XML when requests are being made.

Any help with this would be appreciated.

Thanks
Keith

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Re: [Dspace-tech] Problem with Data Provider Validation

2007-05-29 Thread Keith Jones


Hi Stuart,

Thanks for the help. Currently my initial problem originated because I did 
not specify the correct base url.  Since correcting that problem the 
repository is not pass the ListIdentifiers test.


The base url is:
http://dspace.udel.edu:8080/dspace-oai/request



On Tue, 29 May 2007, Stuart Lewis [sdl] wrote:


Hi Keith,

Can we see the repository, to see what errors it gives us?

Thanks,


Stuart
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Prifysgol Cymru Aberystwyth   University of Wales Aberystwyth

   E-bost / E-mail: [EMAIL PROTECTED]
Ffon / Tel: (01970) 622860
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On 29/5/07 16:20, Keith Jones [EMAIL PROTECTED] wrote:



Hi Claudia,

Yes,

I used both sites and both are reporting and error in the XML returned.

The VlaidateSite failed on the return of the ?verb=Identify call.

And the explorer site returned and error for all the test.



On Tue, 29 May 2007, Claudia Jürgen wrote:


Hi Keith,

did you use the OAI Validation tool:
http://www.openarchives.org/Register/ValidateSite

or the repository explorer http://re.cs.uct.ac.za/ ?

Claudia


Keith Jones schrieb:

Hello,

   We are running DSpace version 1.4.1, and we want to register our
repository as a OAI data provider.  I went to register but am unable to
because of the following error:

Malformed response: mismatched tag at line 11, column 62, byte 1114

We are sending back malformed XML when requests are being made.

Any help with this would be appreciated.

Thanks
Keith

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Re: [Dspace-tech] Problem with Data Provider Validation

2007-05-29 Thread Keith Jones


I did not chnage anything in the oaicat.properties.

Here is my properties file:

###
# REMEMBER: ONLY UPDATE THE VERSION IN dspace/config/templates
# AND THEN RUN dspace/bin/install-configs!
# DO NOT EDIT THE 'LIVE' VERSION!
###

# OAICat Configuration file - see OAICat documentation for details

# Text surrounded by two '@' symbols is replaced with the corresponding
# property from dspace.cfg.  For example:
#
# http://dspace.udel.edu:8080/dspace
#
# would be replaced with the dspace.url property in dspace.cfg.
# When /dspace/bin/install-configs is run, this file will be installed in 
the

# location specified by the property: config.template.oaicat.properties

AbstractCatalog.oaiCatalogClassName=org.dspace.app.oai.DSpaceOAICatalog
AbstractCatalog.recordFactoryClassName=org.dspace.app.oai.DSpaceRecordFactory
AbstractCatalog.secondsToLive=3600

AbstractCatalog.granularity=-MM-DDThh:mm:ssZ
AbstractCatalog.oaiCatalogClassName=org.dspace.app.oai.DSpaceOAICatalog
AbstractCatalog.recordFactoryClassName=org.dspace.app.oai.DSpaceRecordFactory
AbstractCatalog.secondsToLive=3600

AbstractCatalog.granularity=-MM-DDThh:mm:ssZ

# Custom Identify response values
Identify.repositoryName=DSpace at UD
[EMAIL PROTECTED]
Identify.earliestDatestamp=2001-01-01T00:00:00Z
Identify.deletedRecord=persistent

# List the supported metadataPrefixes along with the class that performs 
the ass

ociated crosswalk
#Crosswalks.didl=org.dspace.app.oai.DIDLCrosswalk
#Crosswalks.mets=org.dspace.app.oai.METSCrosswalk
Crosswalks.oai_dc=org.dspace.app.oai.OAIDCCrosswalk
# OAI crosswalks that use crosswalk plugins.  The
# metadataPrefixes must match the name of the plugin
# for interface org.dspace.content.crosswalk.DisseminationCrosswalk
# Crosswalks.mods=org.dspace.app.oai.PluginCrosswalk
# Crosswalks.mets=org.dspace.app.oai.PluginCrosswalk
# Crosswalks.qdc=org.dspace.app.oai.PluginCrosswalk


On Tue, 29 May 2007, Claudia Jürgen wrote:


Hi Keith,

this error occurs if the date argument is wrong

e.g.
http://dspace.udel.edu:8080/dspace-oai/request?verb=ListIdentifiersfrom=2007-05-02until=2006-05-02metadataPrefix=oai_dc

having from  until

did you change any basic settings, e.g. oaicat.properties

Claudia


Keith Jones schrieb:


Hi Stuart,

Thanks for the help. Currently my initial problem originated because I
did not specify the correct base url.  Since correcting that problem the
repository is not pass the ListIdentifiers test.

The base url is:
http://dspace.udel.edu:8080/dspace-oai/request



On Tue, 29 May 2007, Stuart Lewis [sdl] wrote:


Hi Keith,

Can we see the repository, to see what errors it gives us?

Thanks,


Stuart
_

Datblygydd Cymwysiadau'r WeWeb Applications Developer
Gwasanaethau Gwybodaeth  Information Services
Prifysgol Cymru Aberystwyth   University of Wales Aberystwyth

   E-bost / E-mail: [EMAIL PROTECTED]
Ffon / Tel: (01970) 622860
_



On 29/5/07 16:20, Keith Jones [EMAIL PROTECTED] wrote:



Hi Claudia,

Yes,

I used both sites and both are reporting and error in the XML returned.

The VlaidateSite failed on the return of the ?verb=Identify call.

And the explorer site returned and error for all the test.



On Tue, 29 May 2007, Claudia Jürgen wrote:


Hi Keith,

did you use the OAI Validation tool:
http://www.openarchives.org/Register/ValidateSite

or the repository explorer http://re.cs.uct.ac.za/ ?

Claudia


Keith Jones schrieb:

Hello,

   We are running DSpace version 1.4.1, and we want to register our
repository as a OAI data provider.  I went to register but am
unable to
because of the following error:

Malformed response: mismatched tag at line 11, column 62, byte 1114

We are sending back malformed XML when requests are being made.

Any help with this would be appreciated.

Thanks
Keith

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