Re: [O] org-babel export table from R to LaTeX
Thanks for your suggestion, I solved the problem using:
#+headers: :results output latex
#+begin_src R :session *R* :exports results
...
print(xtable(summary(mypca)))
#+end_src
Regards
Riccardo
2012/2/14 Andreas Leha andreas.l...@med.uni-goettingen.de
Christophe Pouzat christophe.pou...@gmail.com writes:
Sorry,
Checking foo.org
(
http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD
)
I got the correct way to do it:
#+begin_src R :results output latex :exports results
library(xtable)
xtable(foo, caption = ANOVA Table, label = tab:one,
digits = c(0, 0, 2, 0, 2, 3, 3))
#+end_src
Does it solve your problem?
Christophe
Riccardo Romoli ric.rom...@gmail.com writes:
If I set :export latex when I exports to LaTeX I have only the R code,
not the
table.
Best
2012/2/14 Christophe Pouzat christophe.pou...@gmail.com
Riccardo Romoli ric.rom...@gmail.com writes:
Hi, I work with org-babel and R.
In the R session I create a table that I have to export to LaTeX.
This is the code I use:
#+headers: :results latex
#+begin_src R :session *R* :exports results
.
print(xtable(summary(mypca)))
#+end_src
I do not understand why the exported table is delimited by |:
|% latex table generated in R 2.14.1 by xtable 1.6-0 package |
| % Tue Feb 14 16:21:48 2012 |
| \begin{table}[ht] |
| \begin{center} |
| \begin{tabular}{r} |
| \hline |
| PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9
PC10
PC11 PC12 PC13 PC14 PC15 PC16 \\ |
| \hline |
| Standard deviation 3.4693 2.8113 2.5561 2.2668
2.0015 1.9236 1.7287 1.6220 1.4288 1.3456
1.2596
1.2195 1.1278 1.0778 0.8390 0. \\ |
| Proportion of Variance 0.2188 0.1437 0.1188
0.0934
0.0728 0.0673 0.0543 0.0478 0.0371 0.0329
0.0289
0.0270 0.0231 0.0211 0.0128 0. \\ |
| Cumulative Proportion 0.2188 0.3625 0.4813 0.5747
0.6476 0.7149 0.7692 0.8170 0.8541 0.8871
0.9159
0.9429 0.9661 0.9872 1. 1. \\ |
| \hline |
| \end{tabular} |
| \end{center} |
| \end{table} |
| |
Should I change some headers settings??
Best
Hi Riccardo,
Try :exports latex instead of :exports results
Christophe
--
Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking
out
non-existent patterns that happen to suit our purposes.
Bradley Efron Robert Tibshirani (1993) An Introduction to the
Bootstrap
--
Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France
tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Hi Riccardo,
additionally, if you do not want to get too tightly bound to LaTeX, check
out the ascii-package, e.g.
#+begin_src R :results output org wrap :exports results
library(ascii)
## from the lm help page:
ctl - c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
trt - c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
group - gl(2,10,20, labels=c(Ctl,Trt))
weight - c(ctl, trt)
lm.D9 - lm(weight ~ group)
lm.D90 - lm(weight ~ group - 1) # omitting intercept
print(ascii(anova(lm.D9)), type=org)
#+end_src
Cheers,
Andreas
[O] org-babel export table from R to LaTeX
Hi, I work with org-babel and R.
In the R session I create a table that I have to export to LaTeX.
This is the code I use:
#+headers: :results latex
#+begin_src R :session *R* :exports results
.
print(xtable(summary(mypca)))
#+end_src
I do not understand why the exported table is delimited by |:
|% latex table generated in R 2.14.1 by xtable 1.6-0 package |
| % Tue Feb 14 16:21:48 2012 |
| \begin{table}[ht] |
| \begin{center} |
| \begin{tabular}{r} |
| \hline |
| PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10
PC11 PC12 PC13 PC14 PC15 PC16 \\ |
| \hline |
| Standard deviation 3.4693 2.8113 2.5561 2.2668
2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596
1.2195 1.1278 1.0778 0.8390 0. \\ |
| Proportion of Variance 0.2188 0.1437 0.1188 0.0934
0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289
0.0270 0.0231 0.0211 0.0128 0. \\ |
| Cumulative Proportion 0.2188 0.3625 0.4813 0.5747
0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159
0.9429 0.9661 0.9872 1. 1. \\ |
| \hline |
| \end{tabular} |
| \end{center} |
| \end{table} |
| |
Should I change some headers settings??
Best
Re: [O] org-babel export table from R to LaTeX
If I set :export latex when I exports to LaTeX I have only the R code, not
the table.
Best
2012/2/14 Christophe Pouzat christophe.pou...@gmail.com
Riccardo Romoli ric.rom...@gmail.com writes:
Hi, I work with org-babel and R.
In the R session I create a table that I have to export to LaTeX.
This is the code I use:
#+headers: :results latex
#+begin_src R :session *R* :exports results
.
print(xtable(summary(mypca)))
#+end_src
I do not understand why the exported table is delimited by |:
|% latex table generated in R 2.14.1 by xtable 1.6-0 package |
| % Tue Feb 14 16:21:48 2012 |
| \begin{table}[ht] |
| \begin{center} |
| \begin{tabular}{r} |
| \hline |
| PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10
PC11 PC12 PC13 PC14 PC15 PC16 \\ |
| \hline |
| Standard deviation 3.4693 2.8113 2.5561 2.2668
2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596
1.2195 1.1278 1.0778 0.8390 0. \\ |
| Proportion of Variance 0.2188 0.1437 0.1188 0.0934
0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289
0.0270 0.0231 0.0211 0.0128 0. \\ |
| Cumulative Proportion 0.2188 0.3625 0.4813 0.5747
0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159
0.9429 0.9661 0.9872 1. 1. \\ |
| \hline |
| \end{tabular} |
| \end{center} |
| \end{table} |
| |
Should I change some headers settings??
Best
Hi Riccardo,
Try :exports latex instead of :exports results
Christophe
--
Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking out
non-existent patterns that happen to suit our purposes.
Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap
--
Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France
tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Re: [O] org-babel export table from R to LaTeX
Sorry,
Checking foo.org
(http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD)
I got the correct way to do it:
#+begin_src R :results output latex :exports results
library(xtable)
xtable(foo, caption = ANOVA Table, label = tab:one,
digits = c(0, 0, 2, 0, 2, 3, 3))
#+end_src
Does it solve your problem?
Christophe
Riccardo Romoli ric.rom...@gmail.com writes:
If I set :export latex when I exports to LaTeX I have only the R code, not the
table.
Best
2012/2/14 Christophe Pouzat christophe.pou...@gmail.com
Riccardo Romoli ric.rom...@gmail.com writes:
Hi, I work with org-babel and R.
In the R session I create a table that I have to export to LaTeX.
This is the code I use:
#+headers: :results latex
#+begin_src R :session *R* :exports results
.
print(xtable(summary(mypca)))
#+end_src
I do not understand why the exported table is delimited by |:
|% latex table generated in R 2.14.1 by xtable 1.6-0 package |
| % Tue Feb 14 16:21:48 2012 |
| \begin{table}[ht] |
| \begin{center} |
| \begin{tabular}{r} |
| \hline |
| PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10
PC11 PC12 PC13 PC14 PC15 PC16 \\ |
| \hline |
| Standard deviation 3.4693 2.8113 2.5561 2.2668
2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596
1.2195 1.1278 1.0778 0.8390 0. \\ |
| Proportion of Variance 0.2188 0.1437 0.1188 0.0934
0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289
0.0270 0.0231 0.0211 0.0128 0. \\ |
| Cumulative Proportion 0.2188 0.3625 0.4813 0.5747
0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159
0.9429 0.9661 0.9872 1. 1. \\ |
| \hline |
| \end{tabular} |
| \end{center} |
| \end{table} |
| |
Should I change some headers settings??
Best
Hi Riccardo,
Try :exports latex instead of :exports results
Christophe
--
Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking out
non-existent patterns that happen to suit our purposes.
Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap
--
Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France
tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
--
Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking out
non-existent patterns that happen to suit our purposes.
Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap
--
Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France
tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Re: [O] org-babel export table from R to LaTeX
Christophe Pouzat christophe.pou...@gmail.com writes:
Sorry,
Checking foo.org
(http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD)
I got the correct way to do it:
#+begin_src R :results output latex :exports results
library(xtable)
xtable(foo, caption = ANOVA Table, label = tab:one,
digits = c(0, 0, 2, 0, 2, 3, 3))
#+end_src
Does it solve your problem?
Christophe
Riccardo Romoli ric.rom...@gmail.com writes:
If I set :export latex when I exports to LaTeX I have only the R code, not
the
table.
Best
2012/2/14 Christophe Pouzat christophe.pou...@gmail.com
Riccardo Romoli ric.rom...@gmail.com writes:
Hi, I work with org-babel and R.
In the R session I create a table that I have to export to LaTeX.
This is the code I use:
#+headers: :results latex
#+begin_src R :session *R* :exports results
.
print(xtable(summary(mypca)))
#+end_src
I do not understand why the exported table is delimited by |:
|% latex table generated in R 2.14.1 by xtable 1.6-0 package |
| % Tue Feb 14 16:21:48 2012 |
| \begin{table}[ht] |
| \begin{center} |
| \begin{tabular}{r} |
| \hline |
| PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10
PC11 PC12 PC13 PC14 PC15 PC16 \\ |
| \hline |
| Standard deviation 3.4693 2.8113 2.5561 2.2668
2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596
1.2195 1.1278 1.0778 0.8390 0. \\ |
| Proportion of Variance 0.2188 0.1437 0.1188 0.0934
0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289
0.0270 0.0231 0.0211 0.0128 0. \\ |
| Cumulative Proportion 0.2188 0.3625 0.4813 0.5747
0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159
0.9429 0.9661 0.9872 1. 1. \\ |
| \hline |
| \end{tabular} |
| \end{center} |
| \end{table} |
| |
Should I change some headers settings??
Best
Hi Riccardo,
Try :exports latex instead of :exports results
Christophe
--
Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking out
non-existent patterns that happen to suit our purposes.
Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap
--
Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France
tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Hi Riccardo,
additionally, if you do not want to get too tightly bound to LaTeX, check
out the ascii-package, e.g.
#+begin_src R :results output org wrap :exports results
library(ascii)
## from the lm help page:
ctl - c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
trt - c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
group - gl(2,10,20, labels=c(Ctl,Trt))
weight - c(ctl, trt)
lm.D9 - lm(weight ~ group)
lm.D90 - lm(weight ~ group - 1) # omitting intercept
print(ascii(anova(lm.D9)), type=org)
#+end_src
Cheers,
Andreas
